Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq18890 122 2e-22
seq17 111 3e-19
>seq18890
Length=446397
Score = 122 bits (134), Expect = 2e-22
Identities = 303/459 (66%), Gaps = 6/459 (1%)
Strand=Plus/Minus
Query 243298 CGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATC 243357
|| |||||||| | | | |||||| ||||| | || ||| ||| | |||||
Sbjct 160492 CGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATC 160433
Query 243358 TTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGT 243417
|| ||||| ||| ||| | ||||||||||| | | || |||||| ||||| |
Sbjct 160432 TTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTTCTCCAACGAGCTCATCTCT 160373
Query 243418 CGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAAG 243477
|| |||||||| |||||| | |||| | || ||| || | | ||||||
Sbjct 160372 CGTGACGAGGGTCTTCACACCGACTTCGCTTGTCTGCTGTTCTCTCACTT---GAACAAC 160316
Query 243478 CTACCATTCGAA---ACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAA 243534
| || | | || ||| || | || |||| || || || | | || | ||
Sbjct 160315 CGCCCCAGCAAGCAGACTGTCCAAGACATTGTCACCGATGCTGTCAATATTGAGCAAGAG 160256
Query 243535 TTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAG 243594
||| | || ||| | || || | || | ||||||||| || |||||| |||
Sbjct 160255 TTCCTGACTGAGGCTCTCCCCTGTGGCCTGCTCGGCATGAACGCTACTCTCATGAAGCAG 160196
Query 243595 TACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAAC 243654
||||| || ||||| || |||||| | || |||| || || | ||||| || |||||
Sbjct 160195 TACATTGAGTTCGTTGCAGACCGCCTCCTCGTCGCCCTCGGCAACGAGAAGGTTTACAAG 160136
Query 243655 TCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTC 243714
| | ||||| || | ||| |||||| |||||| ||| || || || |||||||||
Sbjct 160135 GCTACCAACCCATTCGACTTCATGGAGAACATTTCTCTTGGCGGCAAGACCAACTTCTTC 160076
Query 243715 GAAAAGCGTGTCAGTGATTATCAACGCCCTGGTGTGATG 243753
|| ||||||||| |||||| || ||||||| |||
Sbjct 160075 GAGAAGCGTGTCGCTGATTACCAGAAGGCTGGTGTCATG 160037
Score = 109 bits (120), Expect = 1e-18
Identities = 277/420 (66%), Gaps = 6/420 (1%)
Strand=Plus/Plus
Query 243298 CGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATC 243357
|| |||||||| | | | |||||| ||||| | || ||| ||| | |||||
Sbjct 409138 CGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATC 409197
Query 243358 TTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGT 243417
|| ||||| ||| ||| | ||||||||||| | | || |||||| ||||| |
Sbjct 409198 TTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTTCTCCAACGAGCTCATCTCT 409257
Query 243418 CGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAAG 243477
|| |||||||| |||||| | |||| | || ||| || | | ||||||
Sbjct 409258 CGTGACGAGGGTCTTCACACCGACTTCGCTTGTCTGCTGTTCTCTCACTT---GAACAAC 409314
Query 243478 CTACCATTCGAA---ACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAA 243534
| || | | || ||| || | || |||| || || || | ||| ||||
Sbjct 409315 CGCCCCAGCAAGCAGACTGTCCAAGATATTGTCACCGATGCTGTCACTATCGAGCAGGAG 409374
Query 243535 TTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAG 243594
||| | || ||| |||| || | || ||||||||||| || |||||| |||
Sbjct 409375 TTCCTGACTGAGGCTCTTCCCTGTGGTCTGCTTGGCATGAACGCTACTCTCATGAAGCAG 409434
Query 243595 TACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAAC 243654
||||| || ||||| || |||||| | || |||| || || | ||||| || |||||
Sbjct 409435 TACATTGAGTTCGTTGCAGACCGCCTCCTCGTCGCCCTCGGCAACGAGAAGGTTTACAAG 409494
Query 243655 TCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTC 243714
| | ||||| || | ||| |||||| |||||| ||| || || || |||||||||
Sbjct 409495 GCTACCAACCCATTCGACTTCATGGAGAACATTTCTCTTGGCGGCAAGACCAACTTCTTC 409554
>seq17
Length=218
Score = 111 bits (122), Expect = 3e-19
Identities = 136/186 (73%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 243568 GGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATC 243627
||||||||| || |||||| |||||||| || ||||| || |||||| | || ||
Sbjct 218 GGCATGAACGCTACTCTCATGAAGCAGTACATTGAGTTCGTTGCAGACCGCCTCCTCGTC 159
Query 243628 GCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATT 243687
|| || || | ||||| || ||||| | | ||||| || | ||| |||||| ||||
Sbjct 158 GCCCTCGGCAACGAGAAGGTTTACAAGGCTACCAACCCATTCGACTTCATGGAGAACATT 99
Query 243688 TCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGCCCTGGT 243747
|| ||| || || || ||||||||||| ||||||||| |||||| || |||||
Sbjct 98 TCTCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGCTGATTACCAGAAGGCTGGT 39
Query 243748 GTGATG 243753
|| |||
Sbjct 38 GTCATG 33
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102483197217350
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |