Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq18890 122 2e-22 seq17 111 3e-19 >seq18890 Length=446397 Score = 122 bits (134), Expect = 2e-22 Identities = 303/459 (66%), Gaps = 6/459 (1%) Strand=Plus/Minus Query 243298 CGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATC 243357 || |||||||| | | | |||||| ||||| | || ||| ||| | ||||| Sbjct 160492 CGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATC 160433 Query 243358 TTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGT 243417 || ||||| ||| ||| | ||||||||||| | | || |||||| ||||| | Sbjct 160432 TTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTTCTCCAACGAGCTCATCTCT 160373 Query 243418 CGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAAG 243477 || |||||||| |||||| | |||| | || ||| || | | |||||| Sbjct 160372 CGTGACGAGGGTCTTCACACCGACTTCGCTTGTCTGCTGTTCTCTCACTT---GAACAAC 160316 Query 243478 CTACCATTCGAA---ACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAA 243534 | || | | || ||| || | || |||| || || || | | || | || Sbjct 160315 CGCCCCAGCAAGCAGACTGTCCAAGACATTGTCACCGATGCTGTCAATATTGAGCAAGAG 160256 Query 243535 TTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAG 243594 ||| | || ||| | || || | || | ||||||||| || |||||| ||| Sbjct 160255 TTCCTGACTGAGGCTCTCCCCTGTGGCCTGCTCGGCATGAACGCTACTCTCATGAAGCAG 160196 Query 243595 TACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAAC 243654 ||||| || ||||| || |||||| | || |||| || || | ||||| || ||||| Sbjct 160195 TACATTGAGTTCGTTGCAGACCGCCTCCTCGTCGCCCTCGGCAACGAGAAGGTTTACAAG 160136 Query 243655 TCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTC 243714 | | ||||| || | ||| |||||| |||||| ||| || || || ||||||||| Sbjct 160135 GCTACCAACCCATTCGACTTCATGGAGAACATTTCTCTTGGCGGCAAGACCAACTTCTTC 160076 Query 243715 GAAAAGCGTGTCAGTGATTATCAACGCCCTGGTGTGATG 243753 || ||||||||| |||||| || ||||||| ||| Sbjct 160075 GAGAAGCGTGTCGCTGATTACCAGAAGGCTGGTGTCATG 160037 Score = 109 bits (120), Expect = 1e-18 Identities = 277/420 (66%), Gaps = 6/420 (1%) Strand=Plus/Plus Query 243298 CGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATC 243357 || |||||||| | | | |||||| ||||| | || ||| ||| | ||||| Sbjct 409138 CGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATC 409197 Query 243358 TTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGT 243417 || ||||| ||| ||| | ||||||||||| | | || |||||| ||||| | Sbjct 409198 TTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTTCTCCAACGAGCTCATCTCT 409257 Query 243418 CGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAAG 243477 || |||||||| |||||| | |||| | || ||| || | | |||||| Sbjct 409258 CGTGACGAGGGTCTTCACACCGACTTCGCTTGTCTGCTGTTCTCTCACTT---GAACAAC 409314 Query 243478 CTACCATTCGAA---ACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAA 243534 | || | | || ||| || | || |||| || || || | ||| |||| Sbjct 409315 CGCCCCAGCAAGCAGACTGTCCAAGATATTGTCACCGATGCTGTCACTATCGAGCAGGAG 409374 Query 243535 TTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAG 243594 ||| | || ||| |||| || | || ||||||||||| || |||||| ||| Sbjct 409375 TTCCTGACTGAGGCTCTTCCCTGTGGTCTGCTTGGCATGAACGCTACTCTCATGAAGCAG 409434 Query 243595 TACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAAC 243654 ||||| || ||||| || |||||| | || |||| || || | ||||| || ||||| Sbjct 409435 TACATTGAGTTCGTTGCAGACCGCCTCCTCGTCGCCCTCGGCAACGAGAAGGTTTACAAG 409494 Query 243655 TCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTC 243714 | | ||||| || | ||| |||||| |||||| ||| || || || ||||||||| Sbjct 409495 GCTACCAACCCATTCGACTTCATGGAGAACATTTCTCTTGGCGGCAAGACCAACTTCTTC 409554 >seq17 Length=218 Score = 111 bits (122), Expect = 3e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 243568 GGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATC 243627 ||||||||| || |||||| |||||||| || ||||| || |||||| | || || Sbjct 218 GGCATGAACGCTACTCTCATGAAGCAGTACATTGAGTTCGTTGCAGACCGCCTCCTCGTC 159 Query 243628 GCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATT 243687 || || || | ||||| || ||||| | | ||||| || | ||| |||||| |||| Sbjct 158 GCCCTCGGCAACGAGAAGGTTTACAAGGCTACCAACCCATTCGACTTCATGGAGAACATT 99 Query 243688 TCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGCCCTGGT 243747 || ||| || || || ||||||||||| ||||||||| |||||| || ||||| Sbjct 98 TCTCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGCTGATTACCAGAAGGCTGGT 39 Query 243748 GTGATG 243753 || ||| Sbjct 38 GTCATG 33 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102483197217350