Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq24749 259 5e-64
seq27938 199 4e-46
seq11514 111 2e-19
>seq24749
Length=740841
Score = 259 bits (286), Expect = 5e-64
Identities = 1070/1667 (64%), Gaps = 28/1667 (2%)
Strand=Plus/Plus
Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774
|| ||| | ||||||| |||||| || |||||| || || ||||||||| | || |||
Sbjct 415604 AACTACCAATACTTTGGCTTCAAGACCCTGGAGCGTTCCTATCTCCTCAAGCTTGACGGC 415663
Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834
| | || ||||||| ||||| || || | ||||| || || |||| || || ||
Sbjct 415664 AAGATTGCCGAGCGCCCGCAGCACATGATTATGCGTGTTTCCGTCGGTATCTGGGGAGAC 415723
Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894
|| | | ||| | | | | || |||| ||| | || ||
Sbjct 415724 AACGTTGAGCGTGTCATTGAGACGTACAACCTCATGTCCAGCAAATTCTTCACACACGCA 415783
Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953
| || ||||| |||||||| || || || | | ||| |||| || || |||||| |
Sbjct 415784 TCTCCTACCCTCTTCAACGCTGGCACGCCTCAGGCTCAGCTGTCGTCCTGCTTCCTGGTT 415843
Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013
||| | |||| ||| ||| || || | ||||| ||||||| |||||| | ||
Sbjct 415844 GAC-ATGAAGGATGACAGCATTGAAGGTATCTACGACACCCTCAAGACCTGTGCCATGAT 415902
Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073
||| || || || || || || | | ||||| | | ||||||| || || ||
Sbjct 415903 CTCCAAGATGGCTGGTGGTATTGGTCTGAACGTCCATCGCATCCGTGCCACTGGCTCTTA 415962
Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133
||| ||| ||||| ||||| || |||||| || || ||||| || |||||||||||
Sbjct 415963 CATTGCCGGCACCAACGGCACTTCAAACGGCATCACGCCCATGCTTCGCGTCTTCAACAA 416022
Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193
| ||||||||||||| |||||||| || | | | || |||| || |||| ||
Sbjct 416023 CACGGCGCGCTACGTTGACCAGGGCGGCAACAAGCGTCCCGGCGCTTTTGCCATCTACCT 416082
Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253
||||| |||||||| || || | ||| | ||||| || |||||||||||||| ||
Sbjct 416083 TGAGCCATGGCACGCTGATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGA 416142
Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313
| | || | || || ||| || || ||| | || || || || ||||| ||
Sbjct 416143 GGAAGTTCGCGCTCGCGATCTTTTCCTGGCCCTGTGGATCCCCGATCTCTTCATGAAGCG 416202
Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373
|||||||| ||| || ||||| ||| | || ||||| || || || || || | ||
Sbjct 416203 TGTCGAGAAGAACGGCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGA 416262
Query 94374 CGTTTGTGGATCGCG-TTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCA 94432
| | || | || ||||| | |||||| | ||||| | ||||||| |
Sbjct 416263 CTGCTACGG-TGACGAGTTTGAGGCCTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCC 416321
Query 94433 GGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGG 94492
| ||| || | || |||||| ||| | || | || | ||| ||||| |
Sbjct 416322 GCAAGACCATCAAGGCGCAGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCG 416381
Query 94493 GTACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCACCTC 94551
| | |||| ||| | | |||||| | ||| |||| |||| ||||||| || ||||
Sbjct 416382 GCAACCCCTTCATGCTCTACAAGGATCACTG-CAACCGCAAGAGCAACCAGAAGAACCTT 416440
Query 94552 GGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAG 94611
|| || ||||| || |||||||| |||||||||||||| | | || || |||
Sbjct 416441 GGTACCATTCGCAGCTCCAACCTGTGCACAGAGATTGTCGAGTACTCGGCACCCGATGAG 416500
Query 94612 ATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACG 94671
|||| || || ||||||| ||| | |||| || | | ||| || ||||
Sbjct 416501 GTTGCCGTCTGCAACCTGGCCTCTCTGGCCCTGCCCGCCTACGT------TGATTACA-- 416552
Query 94672 TCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGG--ATGGTCTTGA 94729
| || || | || || | || |||| | || | ||| | ||| ||
Sbjct 416553 ACAACGGCGT-GTATGACTTCAAGAAGCTCCACCAGGTCAC--TCAGGTCGTCGTCAGGA 416609
Query 94730 ACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACC 94789
|||| |||||| | |||||| |||| ||||||||| ||||| ||| |||
Sbjct 416610 ACCTCAACAGGATCATCGACGTGAACCATTACCCCGTCATCGAGGCTCGCAACAGCAACA 416669
Query 94790 TGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGC 94849
|| ||||||||||| ||| | || |||||||| || || || || | | | |
Sbjct 416670 TGCGCCATCGGCCCATTGGCCTTGGTGTCCAGGGCTTGGCTGATGCTTTCCTTGCTCTCC 416729
Query 94850 GTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTT 94909
| |||||| || || || || || | || | | || || || | ||| |
Sbjct 416730 GCATGCCCTTTGAGTCGCCTGAGGCCAAGGAGCTCAACAAGCAGATCTTTGAGACCATCT 416789
Query 94910 ATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATC-GGACGGCGGGCCACACGAA 94968
| ||| ||| || || || ||| || | || ||| | || || ||
Sbjct 416790 ACCACGCTGCCCTG--ACCAT--GTCATGCAAGCTCGCTCAGGAGGAAGGCCCCTACTCC 416845
Query 94969 TCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAG 95028
| | || |||||| | ||||| || |||| | |||| | ||| || |||
Sbjct 416846 ACCTATGAGGGCTCGCCCGTCTCCCAGGGTATCCTTCAATACGACATGTGGAACGTCAAG 416905
Query 95029 CCCTCGGGTCTGTACGACTGGGAAGCTCT-ACGCGCTGATGTTATCAAACACGGTGTGAA 95087
|| | | || | ||||||| | || | | || | | | |||| || ||
Sbjct 416906 CCTACTGACCTTTGGGACTGGGCCGACCTCAAGAGC-CAGATCAAGCAACATGGCGTCCG 416964
Query 95088 AAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAA 95147
||| || || ||||| ||||||||||||||| || |||||||||||||||||||
Sbjct 416965 TAACAGTCTTCTCGTGGCGCCCATGCCCACGGCCAGTACCTCGCAGATCCTTGGCAACAA 417024
Query 95148 CGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATT 95207
||||| ||||| || | ||| |||||| | ||| | | || ||||||||||| || ||
Sbjct 417025 CGAGTGCTTCGAGCCTTACACGTCCAACATCTACCAGCGCCGTGTGCTCGCCGGCGAGTT 417084
Query 95208 CCCCGTCATCAACAAGCACCTCCT-ACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACA 95266
|| ||| ||||| || || | || | || | | ||||| | ||| ||| |
Sbjct 417085 CCAGGTCGTCAACCCCTGGCTGCTCAAGGATCTTGTTGAC-ATGGGTCTTTGGTCTGATA 417143
Query 95267 AGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGG 95326
| ||||| | | | || || || ||| ||||||||||||| | || || |
Sbjct 417144 GCATGAAGAATCGCATCATTGCCGAGAATGGTTCCATCCAGAACATCCCCAACATTCCCG 417203
Query 95327 AGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373
||| ||||| | || |||||||| || |||||||| | ||||||
Sbjct 417204 CCGACGTCAAGTCCCTGTACAAGACTGTCTGGGAGATTTCTCAGCGC 417250
Score = 138 bits (152), Expect = 1e-27
Identities = 200/280 (71%), Gaps = 2/280 (1%)
Strand=Plus/Minus
Query 95095 CTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCG 95154
|| || ||||| ||||||||||||||| || ||||||||||||||||||||||||
Sbjct 447032 CTTCTCGTGGCGCCCATGCCCACGGCCAGTACCTCGCAGATCCTTGGCAACAACGAGTGC 446973
Query 95155 TTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTC 95214
||||| || | ||| |||||| | ||| | | || ||||||||||| || |||| |||
Sbjct 446972 TTCGAGCCTTACACGTCCAACATCTACCAGCGCCGTGTGCTCGCCGGCGAGTTCCAGGTC 446913
Query 95215 ATCAACAAGCACCTCCTACGGGACC-TGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAA 95273
||||| || || ||||| || || | ||||| | ||| ||| | | ||
Sbjct 446912 GTCAACCCCTGGCTGCTCAAGGACCTTGTCGAC-ATGGGTCTTTGGTCTGATAGCATGAA 446854
Query 95274 GAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACAT 95333
||||| | | | || || ||| |||||||||| || | || || | |||||
Sbjct 446853 GAACCGCATCATTGCAGAAAATGGTTCCATCCAGAACATTCCCAACATTCCCGCCGACAT 446794
Query 95334 CAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373
|||| | || |||||||| || |||||||| | ||||||
Sbjct 446793 CAAGTCCCTGTACAAGACTGTCTGGGAGATTTCTCAGCGC 446754
>seq27938
Length=10276
Score = 199 bits (220), Expect = 4e-46
Identities = 442/658 (67%), Gaps = 4/658 (1%)
Strand=Plus/Minus
Query 93979 GGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGG 94038
|| || | ||||| ||||||| |||||| | ||||| || || || || || ||
Sbjct 10267 GGTATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATTGGT 10208
Query 94039 ATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCC 94098
| | ||||| | | ||||||| || || ||||| ||| ||||| ||||| ||
Sbjct 10207 CTGAACGTCCATCGCATCCGTGCCACTGGCTCTTACATTGCCGGCACCAACGGCACTTCA 10148
Query 94099 AACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGT 94158
|||||| || || ||||| || |||||||||||| ||||||||||||| ||||||||
Sbjct 10147 AACGGCATCACGCCCATGCTTCGCGTCTTCAACAACACGGCGCGCTACGTTGACCAGGGC 10088
Query 94159 GGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAG 94218
|| | | | || |||| || |||| || ||||| |||||||| || ||
Sbjct 10087 GGCAACAAGCGTCCCGGCGCTTTTGCCATCTACCTTGAGCCATGGCACGCTGATGTCTTC 10028
Query 94219 GCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTC 94278
| ||| | ||||| || |||||||||||||| || | | || | || || |||
Sbjct 10027 GAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAAGTTCGCGCTCGCGATCTTTTC 9968
Query 94279 TACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGT 94338
|| || ||| | || || || || ||||| || |||||||| ||| || ||||| |
Sbjct 9967 CTGGCCCTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAGAAGAACGGCGACTGGACT 9908
Query 94339 CTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCG-TTTTGAAGA 94397
|| | || ||||| || || || || || | ||| | || | || ||||| |
Sbjct 9907 CTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTACGG-TGACGAGTTTGAGGC 9849
Query 94398 CTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGAAGGTTATGGATGCTAGGAAGCT 94457
|||||| | ||||| | ||||||| | | ||| || | || ||||||
Sbjct 9848 CTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCCGCAAGACCATCAAGGCGCAGAAGCT 9789
Query 94458 GTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGA 94517
||| | || | || | ||| ||||| || | |||| ||| | | ||||||
Sbjct 9788 TTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGCTCTACAAGGA 9729
Query 94518 -CTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGT 94576
| ||| |||| |||| ||||||| || |||| || || ||||| || ||||
Sbjct 9728 TCACTG-CAACCGCAAGAGCAACCAGAAGAACCTTGGTACCATTCGCAGCTCCAACCTGT 9670
Query 94577 GCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTC 94634
|||| |||||||||||||| | | || || ||| |||| || || ||||||| |||
Sbjct 9669 GCACAGAGATTGTCGAGTACTCGGCACCCGATGAGGTTGCCGTCTGCAACCTGGCCTC 9612
>seq11514
Length=5315
Score = 111 bits (122), Expect = 2e-19
Identities = 100/126 (79%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 95095 CTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCG 95154
|| || ||||| ||||||||||||||| || ||||||||||||||||||||||||
Sbjct 143 CTTCTCGTGGCGCCCATGCCCACGGCCAGTACCTCGCAGATCCTTGGCAACAACGAGTGC 84
Query 95155 TTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTC 95214
||||| || | ||| |||||| | ||| | | || ||||||||||| || |||| |||
Sbjct 83 TTCGAGCCTTACACGTCCAACATCTACCAGCGCCGTGTGCTCGCCGGCGAGTTCCAGGTC 24
Query 95215 ATCAAC 95220
|||||
Sbjct 23 GTCAAC 18
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494549545972760
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