Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq24749 259 5e-64 seq27938 199 4e-46 seq11514 111 2e-19 >seq24749 Length=740841 Score = 259 bits (286), Expect = 5e-64 Identities = 1070/1667 (64%), Gaps = 28/1667 (2%) Strand=Plus/Plus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||||| |||||| || |||||| || || ||||||||| | || ||| Sbjct 415604 AACTACCAATACTTTGGCTTCAAGACCCTGGAGCGTTCCTATCTCCTCAAGCTTGACGGC 415663 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || ||||||| ||||| || || | ||||| || || |||| || || || Sbjct 415664 AAGATTGCCGAGCGCCCGCAGCACATGATTATGCGTGTTTCCGTCGGTATCTGGGGAGAC 415723 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 || | | ||| | | | | || |||| ||| | || || Sbjct 415724 AACGTTGAGCGTGTCATTGAGACGTACAACCTCATGTCCAGCAAATTCTTCACACACGCA 415783 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953 | || ||||| |||||||| || || || | | ||| |||| || || |||||| | Sbjct 415784 TCTCCTACCCTCTTCAACGCTGGCACGCCTCAGGCTCAGCTGTCGTCCTGCTTCCTGGTT 415843 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| | |||| ||| ||| || || | ||||| ||||||| |||||| | || Sbjct 415844 GAC-ATGAAGGATGACAGCATTGAAGGTATCTACGACACCCTCAAGACCTGTGCCATGAT 415902 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073 ||| || || || || || || | | ||||| | | ||||||| || || || Sbjct 415903 CTCCAAGATGGCTGGTGGTATTGGTCTGAACGTCCATCGCATCCGTGCCACTGGCTCTTA 415962 Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133 ||| ||| ||||| ||||| || |||||| || || ||||| || ||||||||||| Sbjct 415963 CATTGCCGGCACCAACGGCACTTCAAACGGCATCACGCCCATGCTTCGCGTCTTCAACAA 416022 Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193 | ||||||||||||| |||||||| || | | | || |||| || |||| || Sbjct 416023 CACGGCGCGCTACGTTGACCAGGGCGGCAACAAGCGTCCCGGCGCTTTTGCCATCTACCT 416082 Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253 ||||| |||||||| || || | ||| | ||||| || |||||||||||||| || Sbjct 416083 TGAGCCATGGCACGCTGATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGA 416142 Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313 | | || | || || ||| || || ||| | || || || || ||||| || Sbjct 416143 GGAAGTTCGCGCTCGCGATCTTTTCCTGGCCCTGTGGATCCCCGATCTCTTCATGAAGCG 416202 Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373 |||||||| ||| || ||||| ||| | || ||||| || || || || || | || Sbjct 416203 TGTCGAGAAGAACGGCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGA 416262 Query 94374 CGTTTGTGGATCGCG-TTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCA 94432 | | || | || ||||| | |||||| | ||||| | ||||||| | Sbjct 416263 CTGCTACGG-TGACGAGTTTGAGGCCTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCC 416321 Query 94433 GGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGG 94492 | ||| || | || |||||| ||| | || | || | ||| ||||| | Sbjct 416322 GCAAGACCATCAAGGCGCAGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCG 416381 Query 94493 GTACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCACCTC 94551 | | |||| ||| | | |||||| | ||| |||| |||| ||||||| || |||| Sbjct 416382 GCAACCCCTTCATGCTCTACAAGGATCACTG-CAACCGCAAGAGCAACCAGAAGAACCTT 416440 Query 94552 GGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAG 94611 || || ||||| || |||||||| |||||||||||||| | | || || ||| Sbjct 416441 GGTACCATTCGCAGCTCCAACCTGTGCACAGAGATTGTCGAGTACTCGGCACCCGATGAG 416500 Query 94612 ATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACG 94671 |||| || || ||||||| ||| | |||| || | | ||| || |||| Sbjct 416501 GTTGCCGTCTGCAACCTGGCCTCTCTGGCCCTGCCCGCCTACGT------TGATTACA-- 416552 Query 94672 TCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGG--ATGGTCTTGA 94729 | || || | || || | || |||| | || | ||| | ||| || Sbjct 416553 ACAACGGCGT-GTATGACTTCAAGAAGCTCCACCAGGTCAC--TCAGGTCGTCGTCAGGA 416609 Query 94730 ACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACC 94789 |||| |||||| | |||||| |||| ||||||||| ||||| ||| ||| Sbjct 416610 ACCTCAACAGGATCATCGACGTGAACCATTACCCCGTCATCGAGGCTCGCAACAGCAACA 416669 Query 94790 TGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGC 94849 || ||||||||||| ||| | || |||||||| || || || || | | | | Sbjct 416670 TGCGCCATCGGCCCATTGGCCTTGGTGTCCAGGGCTTGGCTGATGCTTTCCTTGCTCTCC 416729 Query 94850 GTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTT 94909 | |||||| || || || || || | || | | || || || | ||| | Sbjct 416730 GCATGCCCTTTGAGTCGCCTGAGGCCAAGGAGCTCAACAAGCAGATCTTTGAGACCATCT 416789 Query 94910 ATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATC-GGACGGCGGGCCACACGAA 94968 | ||| ||| || || || ||| || | || ||| | || || || Sbjct 416790 ACCACGCTGCCCTG--ACCAT--GTCATGCAAGCTCGCTCAGGAGGAAGGCCCCTACTCC 416845 Query 94969 TCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAG 95028 | | || |||||| | ||||| || |||| | |||| | ||| || ||| Sbjct 416846 ACCTATGAGGGCTCGCCCGTCTCCCAGGGTATCCTTCAATACGACATGTGGAACGTCAAG 416905 Query 95029 CCCTCGGGTCTGTACGACTGGGAAGCTCT-ACGCGCTGATGTTATCAAACACGGTGTGAA 95087 || | | || | ||||||| | || | | || | | | |||| || || Sbjct 416906 CCTACTGACCTTTGGGACTGGGCCGACCTCAAGAGC-CAGATCAAGCAACATGGCGTCCG 416964 Query 95088 AAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAA 95147 ||| || || ||||| ||||||||||||||| || ||||||||||||||||||| Sbjct 416965 TAACAGTCTTCTCGTGGCGCCCATGCCCACGGCCAGTACCTCGCAGATCCTTGGCAACAA 417024 Query 95148 CGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATT 95207 ||||| ||||| || | ||| |||||| | ||| | | || ||||||||||| || || Sbjct 417025 CGAGTGCTTCGAGCCTTACACGTCCAACATCTACCAGCGCCGTGTGCTCGCCGGCGAGTT 417084 Query 95208 CCCCGTCATCAACAAGCACCTCCT-ACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACA 95266 || ||| ||||| || || | || | || | | ||||| | ||| ||| | Sbjct 417085 CCAGGTCGTCAACCCCTGGCTGCTCAAGGATCTTGTTGAC-ATGGGTCTTTGGTCTGATA 417143 Query 95267 AGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGG 95326 | ||||| | | | || || || ||| ||||||||||||| | || || | Sbjct 417144 GCATGAAGAATCGCATCATTGCCGAGAATGGTTCCATCCAGAACATCCCCAACATTCCCG 417203 Query 95327 AGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373 ||| ||||| | || |||||||| || |||||||| | |||||| Sbjct 417204 CCGACGTCAAGTCCCTGTACAAGACTGTCTGGGAGATTTCTCAGCGC 417250 Score = 138 bits (152), Expect = 1e-27 Identities = 200/280 (71%), Gaps = 2/280 (1%) Strand=Plus/Minus Query 95095 CTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCG 95154 || || ||||| ||||||||||||||| || |||||||||||||||||||||||| Sbjct 447032 CTTCTCGTGGCGCCCATGCCCACGGCCAGTACCTCGCAGATCCTTGGCAACAACGAGTGC 446973 Query 95155 TTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTC 95214 ||||| || | ||| |||||| | ||| | | || ||||||||||| || |||| ||| Sbjct 446972 TTCGAGCCTTACACGTCCAACATCTACCAGCGCCGTGTGCTCGCCGGCGAGTTCCAGGTC 446913 Query 95215 ATCAACAAGCACCTCCTACGGGACC-TGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAA 95273 ||||| || || ||||| || || | ||||| | ||| ||| | | || Sbjct 446912 GTCAACCCCTGGCTGCTCAAGGACCTTGTCGAC-ATGGGTCTTTGGTCTGATAGCATGAA 446854 Query 95274 GAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACAT 95333 ||||| | | | || || ||| |||||||||| || | || || | ||||| Sbjct 446853 GAACCGCATCATTGCAGAAAATGGTTCCATCCAGAACATTCCCAACATTCCCGCCGACAT 446794 Query 95334 CAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373 |||| | || |||||||| || |||||||| | |||||| Sbjct 446793 CAAGTCCCTGTACAAGACTGTCTGGGAGATTTCTCAGCGC 446754 >seq27938 Length=10276 Score = 199 bits (220), Expect = 4e-46 Identities = 442/658 (67%), Gaps = 4/658 (1%) Strand=Plus/Minus Query 93979 GGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGG 94038 || || | ||||| ||||||| |||||| | ||||| || || || || || || Sbjct 10267 GGTATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATTGGT 10208 Query 94039 ATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCC 94098 | | ||||| | | ||||||| || || ||||| ||| ||||| ||||| || Sbjct 10207 CTGAACGTCCATCGCATCCGTGCCACTGGCTCTTACATTGCCGGCACCAACGGCACTTCA 10148 Query 94099 AACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGT 94158 |||||| || || ||||| || |||||||||||| ||||||||||||| |||||||| Sbjct 10147 AACGGCATCACGCCCATGCTTCGCGTCTTCAACAACACGGCGCGCTACGTTGACCAGGGC 10088 Query 94159 GGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAG 94218 || | | | || |||| || |||| || ||||| |||||||| || || Sbjct 10087 GGCAACAAGCGTCCCGGCGCTTTTGCCATCTACCTTGAGCCATGGCACGCTGATGTCTTC 10028 Query 94219 GCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTC 94278 | ||| | ||||| || |||||||||||||| || | | || | || || ||| Sbjct 10027 GAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAAGTTCGCGCTCGCGATCTTTTC 9968 Query 94279 TACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGT 94338 || || ||| | || || || || ||||| || |||||||| ||| || ||||| | Sbjct 9967 CTGGCCCTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAGAAGAACGGCGACTGGACT 9908 Query 94339 CTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCG-TTTTGAAGA 94397 || | || ||||| || || || || || | ||| | || | || ||||| | Sbjct 9907 CTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTACGG-TGACGAGTTTGAGGC 9849 Query 94398 CTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGAAGGTTATGGATGCTAGGAAGCT 94457 |||||| | ||||| | ||||||| | | ||| || | || |||||| Sbjct 9848 CTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCCGCAAGACCATCAAGGCGCAGAAGCT 9789 Query 94458 GTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGA 94517 ||| | || | || | ||| ||||| || | |||| ||| | | |||||| Sbjct 9788 TTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGCTCTACAAGGA 9729 Query 94518 -CTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGT 94576 | ||| |||| |||| ||||||| || |||| || || ||||| || |||| Sbjct 9728 TCACTG-CAACCGCAAGAGCAACCAGAAGAACCTTGGTACCATTCGCAGCTCCAACCTGT 9670 Query 94577 GCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTC 94634 |||| |||||||||||||| | | || || ||| |||| || || ||||||| ||| Sbjct 9669 GCACAGAGATTGTCGAGTACTCGGCACCCGATGAGGTTGCCGTCTGCAACCTGGCCTC 9612 >seq11514 Length=5315 Score = 111 bits (122), Expect = 2e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 95095 CTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCG 95154 || || ||||| ||||||||||||||| || |||||||||||||||||||||||| Sbjct 143 CTTCTCGTGGCGCCCATGCCCACGGCCAGTACCTCGCAGATCCTTGGCAACAACGAGTGC 84 Query 95155 TTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTC 95214 ||||| || | ||| |||||| | ||| | | || ||||||||||| || |||| ||| Sbjct 83 TTCGAGCCTTACACGTCCAACATCTACCAGCGCCGTGTGCTCGCCGGCGAGTTCCAGGTC 24 Query 95215 ATCAAC 95220 ||||| Sbjct 23 GTCAAC 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494549545972760