Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq24749 131 2e-25
seq11113 127 2e-24
seq23972 123 2e-23
seq27938 122 9e-23
seq26527 95.1 1e-14
seq22587 95.1 1e-14
seq18890 89.7 5e-13
seq1002 84.2 2e-11
>seq24749
Length=740841
Score = 131 bits (144), Expect = 2e-25
Identities = 514/791 (65%), Gaps = 57/791 (7%)
Strand=Plus/Minus
Query 153390 GGCATGCGCAGCAGCACA-AAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGTCG 153448
|||||||| || |||| || || || |||| ||||||| ||| | ||| ||||| ||
Sbjct 416736 GGCATGCGGAG-AGCAAGGAAAGCATCAGCCAAGCCCTGGACACCAAGGCCAATGGGCCG 416678
Query 153449 ATGCTTCTCGTTGCTGCGCCTCGCGCTCGCT-ATGGGATAGTGATTGCGATCGATAATTT 153507
||| | ||||||| | || |||| | | ||| || || || ||||| ||
Sbjct 416677 ATGGCGCATGTTGCTGTTGCGAGC-CTCGATGACGGGGTAATGGTTCACGTCGATGATCC 416619
Query 153508 TGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAG--GT 153565
|||||||||| | || || || | ||| | | | || |||| ||| ||||| |
Sbjct 416618 TGTTGAGGTTCCTGACGACGACCTGAGTGACCTGGTGGAGCTTCTTGAAGTCATACACGC 416559
Query 153566 CATT-TCGTCGACG-CGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGCC 153623
| || | || | |||| || || ||| | ||| ||||| || ||||||||
Sbjct 416558 CGTTGTTGTAATCAACGTAGGCGGG----CAGGGCCAGAGAGGCCAGGTTGCAGACGGCA 416503
Query 153624 GTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACG 153683
||| |||| | ||||| || ||||| | ||| |||||| || |||
Sbjct 416502 ACCTCATCGGGTGCCGAGTACTCGACAATCTCTGTGCACAGGTTGGAGCTGCGAATGGTA 416443
Query 153684 CCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCG 153743
|| | || | ||| ||||| ||||| ||||| || ||| |||||||| | || |
Sbjct 416442 CCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTG 416383
Query 153744 CCGGTCTCGACTTGCGTTTCGACGATAA---ACCTATGCAGGTCCTGCGCTCGCACCCGC 153800
||||||||| || | |||| || ||| | || | |||||| | |
Sbjct 416382 CCGGTCTCGGTCTGAGCCTCGAGGACGGCGTACCAAAGC---TTCTGCGC-----CTTGA 416331
Query 153801 TGCCGATAGCGGCCCTCGC------TCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCG 153854
|| | |||||||| || ||||||| |||||||| ||||||||||||
Sbjct 416330 TGGTCTT-GCGGCCCTTGCCAGCCTTCTCGTACTTCTCGTACAAGGCCTCAAACTCGTCA 416272
Query 153855 CCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCG 153914
||||||||||| || ||||| || |||| | || ||||| || | ||| ||||
Sbjct 416271 CCGTAGCAGTCAGCAAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCA------GTCG 416218
Query 153915 GCGTT------GACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCG 153968
|||| ||| || |||||| ||||| || | ||| || || | || |||
Sbjct 416217 CCGTTCTTCTCGACACGCTTCATGAAGAGATCGGGGATCCACAGGGCCAGGAAAAGATCG 416158
Query 153969 CGCGCCTTGCAA---TCCTCCGCGCCCATGTTGCGTTTCAGAT-TGA--GCACGCTATAG 154022
|| || || | |||||| ||| ||| || | || | | | || | | ||
Sbjct 416157 CGAGC---GCGAACTTCCTCCTTGCCGTGGTTC--TTGCGGAGGTCAAGGAACTCGA-AG 416104
Query 154023 ATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTT---CCGCCC 154079
| || |||||||| || |||| ||||| ||| | || || |||||| ||||||
Sbjct 416103 ACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCGCCGGGACGCTTGTTGCCGCCC 416044
Query 154080 TGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCG 154139
|| || |||| |||| || | |||||||||||||| | |||||| | |||| |||
Sbjct 416043 TGGTCAACGTAGCGCGCCGTGTTGTTGAAGACGCGAAGCATGGGCGTGATGCCGTTTGAA 415984
Query 154140 GTGCCGTTGGT 154150
|||||||||||
Sbjct 415983 GTGCCGTTGGT 415973
>seq11113
Length=490148
Score = 127 bits (140), Expect = 2e-24
Identities = 148/196 (76%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| ||||||||||||||| || |||||| ||||| || || || || | |
Sbjct 77480 GACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCCTCAAGCTGCTTTCCAGCA 77539
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539
|||| || ||||||||||| ||||| ||||| || ||||| ||| | || | || |
Sbjct 77540 AAGATGAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTC-CTGAATCTTGGACTTGAC 77598
Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
||| || | |||||||| ||||| ||||||| || | || || || |||||||| |
Sbjct 77599 GTTG-TCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTGCCGGTCAGAGTCT 77657
Query 138599 TTACAAAAATCTGCAT 138614
| ||||| ||||||||
Sbjct 77658 TGACAAAGATCTGCAT 77673
>seq23972
Length=267833
Score = 123 bits (136), Expect = 2e-23
Identities = 147/196 (75%), Gaps = 4/196 (2%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| ||||||||||||||| || |||||| ||||| || || || || |
Sbjct 225260 GACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGACCATCCTCAAGCTGCTTTCCAGCG 225201
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539
|||| |||||||||||||| ||||| ||||| || ||||| ||| | || | || |
Sbjct 225200 AAGATGAGACGCTGTTGGTCGGGAGGAATACCCTCCTTGTC-CTGAATCTTCGACTTGAC 225142
Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
||| || | |||||||| ||||||||||| | || | || || || ||||| || |
Sbjct 225141 GTTG-TCAATGGTGTCGGAAGACTCCACCTCAAGAGTGATGGTCTTGCCGGTCAGCGTCT 225083
Query 138599 TTACAAAAATCTGCAT 138614
| ||||| ||||||||
Sbjct 225082 TGACAAAGATCTGCAT 225067
>seq27938
Length=10276
Score = 122 bits (134), Expect = 9e-23
Identities = 381/582 (65%), Gaps = 45/582 (8%)
Strand=Plus/Plus
Query 153593 CACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGAT 153652
|| ||| | ||| ||||| || |||||||| ||| |||| | ||||| || ||
Sbjct 9602 CAGGGCCAGAGAGGCCAGGTTGCAGACGGCAACCTCATCGGGTGCCGAGTACTCGACAAT 9661
Query 153653 CTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATT 153712
||| | ||| |||||| || ||| || | || | ||| ||||| ||||| ||
Sbjct 9662 CTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTT 9721
Query 153713 GCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAA- 153771
||| || ||| |||||||| | || |||||||||| || | |||| ||
Sbjct 9722 GCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGACGGC 9781
Query 153772 --ACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGC------TCTC 153823
||| | || | |||||| | | || | |||||||| || ||||
Sbjct 9782 GTACCAAAGC---TTCTGCGC-----CTTGATGGTCTT-GCGGCCCTTGCCAGCCTTCTC 9832
Query 153824 GTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTG 153883
||| |||||||| |||||||||||| ||||||||||| || ||||| || ||||
Sbjct 9833 GTACTTCTCGTACAAGGCCTCAAACTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCACTC 9892
Query 153884 ATGCGGACACATCAGCGACCACATATCGTCGGCGTT------GACGCGTCGCATGAACAG 153937
| || ||||| || | ||| |||| |||| ||| || |||||| ||
Sbjct 9893 GTTGGGGCACATGAGAGTCCA------GTCGCCGTTCTTCTCGACACGCTTCATGAAGAG 9946
Query 153938 ATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAA---TCCTCCGCGCCCAT 153994
||| || | ||| || || | || ||||| || || | |||||| |||
Sbjct 9947 ATCGGGGATCCACAGGGCCAGGAAAAGATCGCGAGC---GCGAACTTCCTCCTTGCCGTG 10003
Query 153995 GTTGCGTTTCAGAT-TGA--GCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGAC 154051
||| || | || | | | || | | ||| || |||||||| || |||| |||||
Sbjct 10004 GTTC--TTGCGGAGGTCAAGGAACTCGA-AGACATCAGCGTGCCATGGCTCAAGGTAGAT 10060
Query 154052 GGCCAGGGCACCTTTACGCTTT---CCGCCCTGATCGACGTGGCGCACCATATTGTTGAA 154108
||| | || || |||||| |||||||| || |||| |||| || | ||||||||
Sbjct 10061 GGCAAAAGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAA 10120
Query 154109 GACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGT 154150
|||||| | |||||| | |||| ||| |||||||||||
Sbjct 10121 GACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGT 10162
>seq26527
Length=223112
Score = 95.1 bits (104), Expect = 1e-14
Identities = 140/196 (71%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||| | ||| || ||||| || || || || |
Sbjct 222610 GACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCG 222669
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
|||| || ||||||||||| || || || || || ||||| ||| || || | |
Sbjct 222670 AAGATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACA 222729
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | |||||||| |||||||||||| | || | || || || || || || ||
Sbjct 222730 TTG-TCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTT 222788
Query 138600 TACAAAAATCTGCATG 138615
|| || |||||||||
Sbjct 222789 GACGAAGATCTGCATG 222804
>seq22587
Length=423
Score = 95.1 bits (104), Expect = 1e-14
Identities = 140/196 (71%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||| | ||| || ||||| || || || || | |
Sbjct 279 GACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCA 220
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
| || || ||||||||||| || || || || || ||||| ||| || || | |
Sbjct 219 AAAATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACA 160
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
|||| | | |||||||| |||||||||||| | || | || || || || || || ||
Sbjct 159 TTGT-CGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTT 101
Query 138600 TACAAAAATCTGCATG 138615
|| || |||||||||
Sbjct 100 GACGAAGATCTGCATG 85
>seq18890
Length=446397
Score = 89.7 bits (98), Expect = 5e-13
Identities = 336/519 (65%), Gaps = 31/519 (6%)
Strand=Plus/Minus
Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCG-- 52383
|| || ||| ||||||| |||||| | ||||| ||| |||||| | ||| |
Sbjct 160564 GTTCCCTGCATTCGCAAGAAGGCTGACTGGGCCTTGACATGGATC---ACCGATAAGAAG 160508
Query 52384 -CCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGC 52442
| || | ||| ||| | || || ||||| | || ||||| | || || |||
Sbjct 160507 TCTACCTTTGCCACCCGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAGCGGT 160448
Query 52443 AGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGC 52502
||| ||| ||||||| | | || | | |||| | ||||| |||||||| ||| |
Sbjct 160447 GCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTTCTCC 160388
Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT--------CT 52554
|||||| | || || || ||||| || || ||||| ||||| || || || ||
Sbjct 160387 AACGAGCTCATCTCTCGTGACGAGGGTCTTCACACCGACTTCGCTTGTCTGCTGTTCTCT 160328
Query 52555 -ACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAG 52613
||| || | ||| || | || || | | || || ||| |||
Sbjct 160327 CACTTGAACAACCGC----CCCAGCAAGCAGACT-GTCCAAGA-------CATTGTCACC 160280
Query 52614 GAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGC 52673
|| || || ||| || | ||||| | || | || || || | ||||| |||
Sbjct 160279 GATGCTGTCAATATTGAGCAAGAGTTCCTGACTGAGGCTCTCCCCTGTGGCCTGCTCGGC 160220
Query 52674 ATGAACGCGCAGTC-CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCA 52732
|||||||| | || |||| ||||||| ||||| || || || || || | ||
Sbjct 160219 ATGAACGCT-ACTCTCATGAAGCAGTACATTGAGTTCGTTGCAGACCGCCTCCTCGTCGC 160161
Query 52733 GCTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTT 52791
||||| || | | ||| | ||| ||| ||| || || || || ||| | |||||||
Sbjct 160160 CCTCGG-CAACGAGAAGGTTTACAAGGCTACCAACCCATTCGACTTCATGGAGAACATTT 160102
Query 52792 CGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCG 52830
| |||| |||||||||||||| ||||||||||| ||||
Sbjct 160101 CTCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCG 160063
>seq1002
Length=198801
Score = 84.2 bits (92), Expect = 2e-11
Identities = 130/183 (71%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484
|||| || |||||||||||| || ||| || |||||||| || || |||| | |
Sbjct 112545 CCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAA 112604
Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543
| || ||||||||||| || || || || || ||||| ||| || || | ||||
Sbjct 112605 TCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTG- 112663
Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603
|| | |||||||| ||||||||||| | || | || || || ||||| || || ||
Sbjct 112664 TCAATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACG 112723
Query 138604 AAA 138606
|||
Sbjct 112724 AAA 112726
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496088205694320
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