Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq24749 131 2e-25 seq11113 127 2e-24 seq23972 123 2e-23 seq27938 122 9e-23 seq26527 95.1 1e-14 seq22587 95.1 1e-14 seq18890 89.7 5e-13 seq1002 84.2 2e-11 >seq24749 Length=740841 Score = 131 bits (144), Expect = 2e-25 Identities = 514/791 (65%), Gaps = 57/791 (7%) Strand=Plus/Minus Query 153390 GGCATGCGCAGCAGCACA-AAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGTCG 153448 |||||||| || |||| || || || |||| ||||||| ||| | ||| ||||| || Sbjct 416736 GGCATGCGGAG-AGCAAGGAAAGCATCAGCCAAGCCCTGGACACCAAGGCCAATGGGCCG 416678 Query 153449 ATGCTTCTCGTTGCTGCGCCTCGCGCTCGCT-ATGGGATAGTGATTGCGATCGATAATTT 153507 ||| | ||||||| | || |||| | | ||| || || || ||||| || Sbjct 416677 ATGGCGCATGTTGCTGTTGCGAGC-CTCGATGACGGGGTAATGGTTCACGTCGATGATCC 416619 Query 153508 TGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAG--GT 153565 |||||||||| | || || || | ||| | | | || |||| ||| ||||| | Sbjct 416618 TGTTGAGGTTCCTGACGACGACCTGAGTGACCTGGTGGAGCTTCTTGAAGTCATACACGC 416559 Query 153566 CATT-TCGTCGACG-CGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGCC 153623 | || | || | |||| || || ||| | ||| ||||| || |||||||| Sbjct 416558 CGTTGTTGTAATCAACGTAGGCGGG----CAGGGCCAGAGAGGCCAGGTTGCAGACGGCA 416503 Query 153624 GTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACG 153683 ||| |||| | ||||| || ||||| | ||| |||||| || ||| Sbjct 416502 ACCTCATCGGGTGCCGAGTACTCGACAATCTCTGTGCACAGGTTGGAGCTGCGAATGGTA 416443 Query 153684 CCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCG 153743 || | || | ||| ||||| ||||| ||||| || ||| |||||||| | || | Sbjct 416442 CCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTG 416383 Query 153744 CCGGTCTCGACTTGCGTTTCGACGATAA---ACCTATGCAGGTCCTGCGCTCGCACCCGC 153800 ||||||||| || | |||| || ||| | || | |||||| | | Sbjct 416382 CCGGTCTCGGTCTGAGCCTCGAGGACGGCGTACCAAAGC---TTCTGCGC-----CTTGA 416331 Query 153801 TGCCGATAGCGGCCCTCGC------TCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCG 153854 || | |||||||| || ||||||| |||||||| |||||||||||| Sbjct 416330 TGGTCTT-GCGGCCCTTGCCAGCCTTCTCGTACTTCTCGTACAAGGCCTCAAACTCGTCA 416272 Query 153855 CCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCG 153914 ||||||||||| || ||||| || |||| | || ||||| || | ||| |||| Sbjct 416271 CCGTAGCAGTCAGCAAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCA------GTCG 416218 Query 153915 GCGTT------GACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCG 153968 |||| ||| || |||||| ||||| || | ||| || || | || ||| Sbjct 416217 CCGTTCTTCTCGACACGCTTCATGAAGAGATCGGGGATCCACAGGGCCAGGAAAAGATCG 416158 Query 153969 CGCGCCTTGCAA---TCCTCCGCGCCCATGTTGCGTTTCAGAT-TGA--GCACGCTATAG 154022 || || || | |||||| ||| ||| || | || | | | || | | || Sbjct 416157 CGAGC---GCGAACTTCCTCCTTGCCGTGGTTC--TTGCGGAGGTCAAGGAACTCGA-AG 416104 Query 154023 ATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTT---CCGCCC 154079 | || |||||||| || |||| ||||| ||| | || || |||||| |||||| Sbjct 416103 ACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCGCCGGGACGCTTGTTGCCGCCC 416044 Query 154080 TGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCG 154139 || || |||| |||| || | |||||||||||||| | |||||| | |||| ||| Sbjct 416043 TGGTCAACGTAGCGCGCCGTGTTGTTGAAGACGCGAAGCATGGGCGTGATGCCGTTTGAA 415984 Query 154140 GTGCCGTTGGT 154150 ||||||||||| Sbjct 415983 GTGCCGTTGGT 415973 >seq11113 Length=490148 Score = 127 bits (140), Expect = 2e-24 Identities = 148/196 (76%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| || |||||| ||||| || || || || | | Sbjct 77480 GACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCCTCAAGCTGCTTTCCAGCA 77539 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || ||||||||||| ||||| ||||| || ||||| ||| | || | || | Sbjct 77540 AAGATGAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTC-CTGAATCTTGGACTTGAC 77598 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | |||||||| ||||| ||||||| || | || || || |||||||| | Sbjct 77599 GTTG-TCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTGCCGGTCAGAGTCT 77657 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| |||||||| Sbjct 77658 TGACAAAGATCTGCAT 77673 >seq23972 Length=267833 Score = 123 bits (136), Expect = 2e-23 Identities = 147/196 (75%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| || |||||| ||||| || || || || | Sbjct 225260 GACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGACCATCCTCAAGCTGCTTTCCAGCG 225201 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| |||||||||||||| ||||| ||||| || ||||| ||| | || | || | Sbjct 225200 AAGATGAGACGCTGTTGGTCGGGAGGAATACCCTCCTTGTC-CTGAATCTTCGACTTGAC 225142 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | |||||||| ||||||||||| | || | || || || ||||| || | Sbjct 225141 GTTG-TCAATGGTGTCGGAAGACTCCACCTCAAGAGTGATGGTCTTGCCGGTCAGCGTCT 225083 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| |||||||| Sbjct 225082 TGACAAAGATCTGCAT 225067 >seq27938 Length=10276 Score = 122 bits (134), Expect = 9e-23 Identities = 381/582 (65%), Gaps = 45/582 (8%) Strand=Plus/Plus Query 153593 CACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGAT 153652 || ||| | ||| ||||| || |||||||| ||| |||| | ||||| || || Sbjct 9602 CAGGGCCAGAGAGGCCAGGTTGCAGACGGCAACCTCATCGGGTGCCGAGTACTCGACAAT 9661 Query 153653 CTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATT 153712 ||| | ||| |||||| || ||| || | || | ||| ||||| ||||| || Sbjct 9662 CTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTT 9721 Query 153713 GCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAA- 153771 ||| || ||| |||||||| | || |||||||||| || | |||| || Sbjct 9722 GCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGACGGC 9781 Query 153772 --ACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGC------TCTC 153823 ||| | || | |||||| | | || | |||||||| || |||| Sbjct 9782 GTACCAAAGC---TTCTGCGC-----CTTGATGGTCTT-GCGGCCCTTGCCAGCCTTCTC 9832 Query 153824 GTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTG 153883 ||| |||||||| |||||||||||| ||||||||||| || ||||| || |||| Sbjct 9833 GTACTTCTCGTACAAGGCCTCAAACTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCACTC 9892 Query 153884 ATGCGGACACATCAGCGACCACATATCGTCGGCGTT------GACGCGTCGCATGAACAG 153937 | || ||||| || | ||| |||| |||| ||| || |||||| || Sbjct 9893 GTTGGGGCACATGAGAGTCCA------GTCGCCGTTCTTCTCGACACGCTTCATGAAGAG 9946 Query 153938 ATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAA---TCCTCCGCGCCCAT 153994 ||| || | ||| || || | || ||||| || || | |||||| ||| Sbjct 9947 ATCGGGGATCCACAGGGCCAGGAAAAGATCGCGAGC---GCGAACTTCCTCCTTGCCGTG 10003 Query 153995 GTTGCGTTTCAGAT-TGA--GCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGAC 154051 ||| || | || | | | || | | ||| || |||||||| || |||| ||||| Sbjct 10004 GTTC--TTGCGGAGGTCAAGGAACTCGA-AGACATCAGCGTGCCATGGCTCAAGGTAGAT 10060 Query 154052 GGCCAGGGCACCTTTACGCTTT---CCGCCCTGATCGACGTGGCGCACCATATTGTTGAA 154108 ||| | || || |||||| |||||||| || |||| |||| || | |||||||| Sbjct 10061 GGCAAAAGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAA 10120 Query 154109 GACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGT 154150 |||||| | |||||| | |||| ||| ||||||||||| Sbjct 10121 GACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGT 10162 >seq26527 Length=223112 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | ||| || ||||| || || || || | Sbjct 222610 GACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCG 222669 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||||||||| || || || || || ||||| ||| || || | | Sbjct 222670 AAGATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACA 222729 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| |||||||||||| | || | || || || || || || || Sbjct 222730 TTG-TCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTT 222788 Query 138600 TACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 222789 GACGAAGATCTGCATG 222804 >seq22587 Length=423 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | ||| || ||||| || || || || | | Sbjct 279 GACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCA 220 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 | || || ||||||||||| || || || || || ||||| ||| || || | | Sbjct 219 AAAATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACA 160 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 |||| | | |||||||| |||||||||||| | || | || || || || || || || Sbjct 159 TTGT-CGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTT 101 Query 138600 TACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 100 GACGAAGATCTGCATG 85 >seq18890 Length=446397 Score = 89.7 bits (98), Expect = 5e-13 Identities = 336/519 (65%), Gaps = 31/519 (6%) Strand=Plus/Minus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCG-- 52383 || || ||| ||||||| |||||| | ||||| ||| |||||| | ||| | Sbjct 160564 GTTCCCTGCATTCGCAAGAAGGCTGACTGGGCCTTGACATGGATC---ACCGATAAGAAG 160508 Query 52384 -CCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGC 52442 | || | ||| ||| | || || ||||| | || ||||| | || || ||| Sbjct 160507 TCTACCTTTGCCACCCGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAGCGGT 160448 Query 52443 AGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGC 52502 ||| ||| ||||||| | | || | | |||| | ||||| |||||||| ||| | Sbjct 160447 GCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTTCTCC 160388 Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT--------CT 52554 |||||| | || || || ||||| || || ||||| ||||| || || || || Sbjct 160387 AACGAGCTCATCTCTCGTGACGAGGGTCTTCACACCGACTTCGCTTGTCTGCTGTTCTCT 160328 Query 52555 -ACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAG 52613 ||| || | ||| || | || || | | || || ||| ||| Sbjct 160327 CACTTGAACAACCGC----CCCAGCAAGCAGACT-GTCCAAGA-------CATTGTCACC 160280 Query 52614 GAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGC 52673 || || || ||| || | ||||| | || | || || || | ||||| ||| Sbjct 160279 GATGCTGTCAATATTGAGCAAGAGTTCCTGACTGAGGCTCTCCCCTGTGGCCTGCTCGGC 160220 Query 52674 ATGAACGCGCAGTC-CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCA 52732 |||||||| | || |||| ||||||| ||||| || || || || || | || Sbjct 160219 ATGAACGCT-ACTCTCATGAAGCAGTACATTGAGTTCGTTGCAGACCGCCTCCTCGTCGC 160161 Query 52733 GCTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTT 52791 ||||| || | | ||| | ||| ||| ||| || || || || ||| | ||||||| Sbjct 160160 CCTCGG-CAACGAGAAGGTTTACAAGGCTACCAACCCATTCGACTTCATGGAGAACATTT 160102 Query 52792 CGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCG 52830 | |||| |||||||||||||| ||||||||||| |||| Sbjct 160101 CTCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCG 160063 >seq1002 Length=198801 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || |||||||||||| || ||| || |||||||| || || |||| | | Sbjct 112545 CCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAA 112604 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543 | || ||||||||||| || || || || || ||||| ||| || || | |||| Sbjct 112605 TCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTG- 112663 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | |||||||| ||||||||||| | || | || || || ||||| || || || Sbjct 112664 TCAATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACG 112723 Query 138604 AAA 138606 ||| Sbjct 112724 AAA 112726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496088205694320