Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq24749 168 1e-36
seq11514 118 2e-21
>seq24749
Length=740841
Score = 168 bits (186), Expect = 1e-36
Identities = 449/678 (66%), Gaps = 6/678 (1%)
Strand=Plus/Minus
Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898
||| || || ||||| ||||| | | | |||| | | | | ||| |||||||||||
Sbjct 417445 CTTATCAACAGTGAATTGAATAGGGGCAGCAGCAGCCTGGGTGCGCAGGTAGTACATGCC 417386
Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958
|||||| ||||| || ||| ||| | ||||||| | | |||| || | | ||
Sbjct 417385 GGTCTTGAGGCCAAGCTTCCAGCCGGCGAAGTGCATGCTCGTGATCTTGCCCATGGTAGG 417326
Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGG 204017
||| |||||||||||||| |||||| ||||||||||| ||| || ||||| || |
Sbjct 417325 GTCCTTCATGTGAATGTTCAAGGACTGGGACTGGTCGATGAA-GGCACCACGATCGGCAG 417267
Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGT 204077
|||| | | || ||| ||| ||||||||||| || |||||| ||| | || ||
Sbjct 417266 CCATCTGCACAACGGTGCGCTGAGAAATCTCCCAGACAGTCTTGTACAGGGACTTGACGT 417207
Query 204078 GTTGAGGCACATCTTCCC-ACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCT 204135
| || | || || | || ||| || || || || ||||| || | | || |
Sbjct 417206 CG-GCGGGA-ATGTTGGGGATGTTCTGGATGGAACCATTCTCGGCAATGATGCGATTCTT 417149
Query 204136 CGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGAT 204195
| | || ||| | |||| | || ||| | ||| |||||||| ||
Sbjct 417148 CATGCTATCAGACCAAAGACCCATGTCAACAAGATCCTTGAGCAGCCAGGGGTTGACGAC 417089
Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255
||| || || |||| ||||| | || | | | |||| ||| | || |||||
Sbjct 417088 CTGGAACTCGCCGGCGAGCACACGGCGCTGGTAGATGTTGGACGTGTAAGGCTCGAAGCA 417029
Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315
|||||||||||| | ||||| | ||| ||||||||||||||||| |||| ||| ||
Sbjct 417028 CTCGTTGTTGCCAAGGATCTGCGAGGTACTGGCCGTGGGCATGGGCGCCACGAGAAGACT 416969
Query 204316 GTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACT 204375
||| || || || | || | || | || ||| || || |||||| | || |
Sbjct 416968 GTTACGGACGCCATGTTGCTTGATCTGGCTCTTGAGGTCGGCCCAGTCCCAAAGGTCAGT 416909
Query 204376 GGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTA 204435
|| || ||| |||||||||| | |||| ||| || || ||| || ||||| ||
Sbjct 416908 AGGCTTGACGTTCCACATGTCGTATTGAAGGATACCCTGGGAGACGGGCGAGCCCTCATA 416849
Query 204436 CGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTA 204495
|| | || || ||||| | || |||||||| || || || ||| | |||
Sbjct 416848 GGTGGAGTAGGGGCCTTCCTCCTGAGCGAGCTTGCATGACATGGTCAGGGCAGCGTGGTA 416789
Query 204496 CATGGTCTCAAAGATCTG 204513
|||||||||||||||||
Sbjct 416788 GATGGTCTCAAAGATCTG 416771
Score = 165 bits (182), Expect = 1e-35
Identities = 448/678 (66%), Gaps = 6/678 (1%)
Strand=Plus/Plus
Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898
||| || || ||||| || || | | | | |||| | | | | ||| |||||||||||
Sbjct 446559 CTTATCAACGGTGAATTGGATAGGGGCCGCAGCAGCCTGGGTGCGCAGGTAGTACATGCC 446618
Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958
|||||| ||||| || ||| ||| | ||||||| | | |||| || | | ||
Sbjct 446619 GGTCTTGAGGCCAAGCTTCCAGCCGGCGAAGTGCATGCTCGTGATCTTGCCCATGGTAGG 446678
Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGG 204017
||| |||||||||||||| ||||| ||||||||||| ||| || ||||| || |
Sbjct 446679 GTCCTTCATGTGAATGTTCAAGGACTGAGACTGGTCGATGAA-GGCACCACGATCGGCAG 446737
Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGT 204077
|||| | | | ||| ||| ||||||||||| || |||||| ||| | || |||
Sbjct 446738 CCATCTGAACGACGGTGCGCTGAGAAATCTCCCAGACAGTCTTGTACAGGGACTTGATGT 446797
Query 204078 GTTGAGGCACATCTTCCCAC-GTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCT 204135
| || | || || | || ||| || || || || || || || | | || |
Sbjct 446798 CG-GCGGGA-ATGTTGGGAATGTTCTGGATGGAACCATTTTCTGCAATGATGCGGTTCTT 446855
Query 204136 CGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGAT 204195
| | || ||| | |||| || || ||| | ||| |||||||| ||
Sbjct 446856 CATGCTATCAGACCAAAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACGAC 446915
Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255
||| || || |||| ||||| | || | | | |||| ||| | || |||||
Sbjct 446916 CTGGAACTCGCCGGCGAGCACACGGCGCTGGTAGATGTTGGACGTGTAAGGCTCGAAGCA 446975
Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315
|||||||||||| | ||||| | ||| ||||||||||||||||| |||| ||| ||
Sbjct 446976 CTCGTTGTTGCCAAGGATCTGCGAGGTACTGGCCGTGGGCATGGGCGCCACGAGAAGACT 447035
Query 204316 GTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACT 204375
||| || || || | || | || | || ||| || || |||||| | || |
Sbjct 447036 GTTACGGACGCCATGTTGCTTGATCTGGCTCTTGAGGTCGGCCCAGTCCCAAAGGTCAGT 447095
Query 204376 GGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTA 204435
|| || ||| |||||||||| | |||| ||| || || ||| || ||||| ||
Sbjct 447096 AGGCTTGACGTTCCACATGTCGTATTGAAGGATACCCTGGGAGACGGGCGAGCCCTCATA 447155
Query 204436 CGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTA 204495
|| | || || ||||| | || |||||||| || || || ||| | |||
Sbjct 447156 GGTGGAGTAGGGGCCTTCCTCCTGAGCGAGCTTGCATGACATGGTCAGGGCAGCGTGGTA 447215
Query 204496 CATGGTCTCAAAGATCTG 204513
|||||||||||||||||
Sbjct 447216 GATGGTCTCAAAGATCTG 447233
>seq11514
Length=5315
Score = 118 bits (130), Expect = 2e-21
Identities = 224/330 (68%), Gaps = 0/330 (0%)
Strand=Plus/Plus
Query 204184 GGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAA 204243
|||||||| || ||| || || |||| ||||| | || | | | |||| ||| |
Sbjct 15 GGGGTTGACGACCTGGAACTCGCCGGCGAGCACACGGCGCTGGTAGATGTTGGACGTGTA 74
Query 204244 TGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGC 204303
|| ||||| |||||||||||| | ||||| | ||| ||||||||||||||||| ||
Sbjct 75 AGGCTCGAAGCACTCGTTGTTGCCAAGGATCTGCGAGGTACTGGCCGTGGGCATGGGCGC 134
Query 204304 CAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTC 204363
|| ||| || ||| || || || | || | || | || ||| || || ||||||
Sbjct 135 CACGAGAAGACTGTTACGGACGCCATGTTGCTTGATCTGGCTCTTGAGGTCGGCCCAGTC 194
Query 204364 GTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGG 204423
| || | || || ||| |||||||||| | |||| ||| || || ||| ||
Sbjct 195 CCAAAGGTCAGTAGGCTTGACGTTCCACATGTCGTATTGAAGGATACCCTGGGAGACGGG 254
Query 204424 GCTGCCCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCAT 204483
||||| || || | || || ||||| | || |||||||| || || ||
Sbjct 255 CGAGCCCTCATAGGTGGAGTAGGGGCCTTCCTCCTGAGCGAGCTTGCATGACATGGTCAG 314
Query 204484 GGCGTGATAGTACATGGTCTCAAAGATCTG 204513
||| | ||| |||||||||||||||||
Sbjct 315 GGCAGCGTGGTAGATGGTCTCAAAGATCTG 344
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 794876090585360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |