Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq24749 168 1e-36 seq11514 118 2e-21 >seq24749 Length=740841 Score = 168 bits (186), Expect = 1e-36 Identities = 449/678 (66%), Gaps = 6/678 (1%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898 ||| || || ||||| ||||| | | | |||| | | | | ||| ||||||||||| Sbjct 417445 CTTATCAACAGTGAATTGAATAGGGGCAGCAGCAGCCTGGGTGCGCAGGTAGTACATGCC 417386 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958 |||||| ||||| || ||| ||| | ||||||| | | |||| || | | || Sbjct 417385 GGTCTTGAGGCCAAGCTTCCAGCCGGCGAAGTGCATGCTCGTGATCTTGCCCATGGTAGG 417326 Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGG 204017 ||| |||||||||||||| |||||| ||||||||||| ||| || ||||| || | Sbjct 417325 GTCCTTCATGTGAATGTTCAAGGACTGGGACTGGTCGATGAA-GGCACCACGATCGGCAG 417267 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGT 204077 |||| | | || ||| ||| ||||||||||| || |||||| ||| | || || Sbjct 417266 CCATCTGCACAACGGTGCGCTGAGAAATCTCCCAGACAGTCTTGTACAGGGACTTGACGT 417207 Query 204078 GTTGAGGCACATCTTCCC-ACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCT 204135 | || | || || | || ||| || || || || ||||| || | | || | Sbjct 417206 CG-GCGGGA-ATGTTGGGGATGTTCTGGATGGAACCATTCTCGGCAATGATGCGATTCTT 417149 Query 204136 CGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGAT 204195 | | || ||| | |||| | || ||| | ||| |||||||| || Sbjct 417148 CATGCTATCAGACCAAAGACCCATGTCAACAAGATCCTTGAGCAGCCAGGGGTTGACGAC 417089 Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 ||| || || |||| ||||| | || | | | |||| ||| | || ||||| Sbjct 417088 CTGGAACTCGCCGGCGAGCACACGGCGCTGGTAGATGTTGGACGTGTAAGGCTCGAAGCA 417029 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 |||||||||||| | ||||| | ||| ||||||||||||||||| |||| ||| || Sbjct 417028 CTCGTTGTTGCCAAGGATCTGCGAGGTACTGGCCGTGGGCATGGGCGCCACGAGAAGACT 416969 Query 204316 GTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACT 204375 ||| || || || | || | || | || ||| || || |||||| | || | Sbjct 416968 GTTACGGACGCCATGTTGCTTGATCTGGCTCTTGAGGTCGGCCCAGTCCCAAAGGTCAGT 416909 Query 204376 GGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTA 204435 || || ||| |||||||||| | |||| ||| || || ||| || ||||| || Sbjct 416908 AGGCTTGACGTTCCACATGTCGTATTGAAGGATACCCTGGGAGACGGGCGAGCCCTCATA 416849 Query 204436 CGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTA 204495 || | || || ||||| | || |||||||| || || || ||| | ||| Sbjct 416848 GGTGGAGTAGGGGCCTTCCTCCTGAGCGAGCTTGCATGACATGGTCAGGGCAGCGTGGTA 416789 Query 204496 CATGGTCTCAAAGATCTG 204513 ||||||||||||||||| Sbjct 416788 GATGGTCTCAAAGATCTG 416771 Score = 165 bits (182), Expect = 1e-35 Identities = 448/678 (66%), Gaps = 6/678 (1%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898 ||| || || ||||| || || | | | | |||| | | | | ||| ||||||||||| Sbjct 446559 CTTATCAACGGTGAATTGGATAGGGGCCGCAGCAGCCTGGGTGCGCAGGTAGTACATGCC 446618 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958 |||||| ||||| || ||| ||| | ||||||| | | |||| || | | || Sbjct 446619 GGTCTTGAGGCCAAGCTTCCAGCCGGCGAAGTGCATGCTCGTGATCTTGCCCATGGTAGG 446678 Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGG 204017 ||| |||||||||||||| ||||| ||||||||||| ||| || ||||| || | Sbjct 446679 GTCCTTCATGTGAATGTTCAAGGACTGAGACTGGTCGATGAA-GGCACCACGATCGGCAG 446737 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGT 204077 |||| | | | ||| ||| ||||||||||| || |||||| ||| | || ||| Sbjct 446738 CCATCTGAACGACGGTGCGCTGAGAAATCTCCCAGACAGTCTTGTACAGGGACTTGATGT 446797 Query 204078 GTTGAGGCACATCTTCCCAC-GTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCT 204135 | || | || || | || ||| || || || || || || || | | || | Sbjct 446798 CG-GCGGGA-ATGTTGGGAATGTTCTGGATGGAACCATTTTCTGCAATGATGCGGTTCTT 446855 Query 204136 CGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGAT 204195 | | || ||| | |||| || || ||| | ||| |||||||| || Sbjct 446856 CATGCTATCAGACCAAAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACGAC 446915 Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 ||| || || |||| ||||| | || | | | |||| ||| | || ||||| Sbjct 446916 CTGGAACTCGCCGGCGAGCACACGGCGCTGGTAGATGTTGGACGTGTAAGGCTCGAAGCA 446975 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 |||||||||||| | ||||| | ||| ||||||||||||||||| |||| ||| || Sbjct 446976 CTCGTTGTTGCCAAGGATCTGCGAGGTACTGGCCGTGGGCATGGGCGCCACGAGAAGACT 447035 Query 204316 GTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACT 204375 ||| || || || | || | || | || ||| || || |||||| | || | Sbjct 447036 GTTACGGACGCCATGTTGCTTGATCTGGCTCTTGAGGTCGGCCCAGTCCCAAAGGTCAGT 447095 Query 204376 GGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTA 204435 || || ||| |||||||||| | |||| ||| || || ||| || ||||| || Sbjct 447096 AGGCTTGACGTTCCACATGTCGTATTGAAGGATACCCTGGGAGACGGGCGAGCCCTCATA 447155 Query 204436 CGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTA 204495 || | || || ||||| | || |||||||| || || || ||| | ||| Sbjct 447156 GGTGGAGTAGGGGCCTTCCTCCTGAGCGAGCTTGCATGACATGGTCAGGGCAGCGTGGTA 447215 Query 204496 CATGGTCTCAAAGATCTG 204513 ||||||||||||||||| Sbjct 447216 GATGGTCTCAAAGATCTG 447233 >seq11514 Length=5315 Score = 118 bits (130), Expect = 2e-21 Identities = 224/330 (68%), Gaps = 0/330 (0%) Strand=Plus/Plus Query 204184 GGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAA 204243 |||||||| || ||| || || |||| ||||| | || | | | |||| ||| | Sbjct 15 GGGGTTGACGACCTGGAACTCGCCGGCGAGCACACGGCGCTGGTAGATGTTGGACGTGTA 74 Query 204244 TGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGC 204303 || ||||| |||||||||||| | ||||| | ||| ||||||||||||||||| || Sbjct 75 AGGCTCGAAGCACTCGTTGTTGCCAAGGATCTGCGAGGTACTGGCCGTGGGCATGGGCGC 134 Query 204304 CAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTC 204363 || ||| || ||| || || || | || | || | || ||| || || |||||| Sbjct 135 CACGAGAAGACTGTTACGGACGCCATGTTGCTTGATCTGGCTCTTGAGGTCGGCCCAGTC 194 Query 204364 GTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGG 204423 | || | || || ||| |||||||||| | |||| ||| || || ||| || Sbjct 195 CCAAAGGTCAGTAGGCTTGACGTTCCACATGTCGTATTGAAGGATACCCTGGGAGACGGG 254 Query 204424 GCTGCCCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCAT 204483 ||||| || || | || || ||||| | || |||||||| || || || Sbjct 255 CGAGCCCTCATAGGTGGAGTAGGGGCCTTCCTCCTGAGCGAGCTTGCATGACATGGTCAG 314 Query 204484 GGCGTGATAGTACATGGTCTCAAAGATCTG 204513 ||| | ||| ||||||||||||||||| Sbjct 315 GGCAGCGTGGTAGATGGTCTCAAAGATCTG 344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794876090585360