Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq25416 125 9e-24 seq22072 123 3e-23 seq6557 123 3e-23 seq1113 116 5e-21 seq19025 84.2 3e-11 >seq25416 Length=238217 Score = 125 bits (138), Expect = 9e-24 Identities = 242/354 (68%), Gaps = 5/354 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||| | ||| || || || ||||| || || || |||| || Sbjct 79328 TCGAAATCCTCACCACCAAGGTGGGTGTCACCGGCGGTGGCAAGAACCTCGAAGACGCCC 79387 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 |||||| | | || ||||| || ||||||||||| || || | || | | Sbjct 79388 TGGTCAATGGACAGGAGAGAGACATCGAAGGTACCACCACCGAGATCGTA---GACAATG 79444 Query 7577 TTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 || | || ||| | | | ||| || || ||||| ||||| || || || || || || Sbjct 79445 ATC-TGGCGCTCGCCGTCGAGCTTGTCAAGGCCGTAGGCGATGGCGGCGGCGGTGGGCTC 79503 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || | ||||| || ||| ||||| ||||| | ||||| || || || || || Sbjct 79504 GTTGACGATACGGAGGACGTTAAGGCCGGCAATGACACCAGCATCCTTGGTGGCCTGGCG 79563 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || ||||| |||||||| ||||| || ||||| |||| ||||| ||||| ||||| Sbjct 79564 CTGGTTGTCGTTGAAGTAGGCGGGGACGGTGACGACGGCGTGAGTGACCTTCTTGCCGAG 79623 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 || | || ||| | || ||||| ||| ||||| ||| | || ||||| || Sbjct 79624 GTAGGCCTCAGCGGTGTCCTTCATCTTGCCAAGAATCATGGCGGAGATCTCCTC 79677 >seq22072 Length=25182 Score = 123 bits (136), Expect = 3e-23 Identities = 343/521 (66%), Gaps = 15/521 (3%) Strand=Plus/Minus Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 || ||||| ||||| ||||| || || | | ||| || |||||||| | | || Sbjct 20182 AGCTCCTCGAAACGGGCACGAGTGATCTGCATCTGGAAGTCCTCGCCGTCGAAGAGGGAG 20123 Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 ||||| |||||||| | || || || | || | || ||||| || ||||| || | Sbjct 20122 TCAATCTCAATGGTGGCCTGGGCACCGCTG--GACAGGGTACGCTTGGCACGCTCGCAAG 20065 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421 | || || | |||||| |||||||| |||| ||| || || ||||| || || | Sbjct 20064 CAGTGCGGAGACGACGCAGGGCACGGGGGTCGTTGGAGATGTCCTTCTTCGACTTGCGCT 20005 Query 7422 TAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGT 7480 || || | | |||| |||| |||| || | ||||| || | ||||| | || Sbjct 20004 GGAAGTCCTTCTTGCAGTGCTCGA-GGAGGCTGGTGTCGAAGTCCTGGCCACCAAGATGG 19946 Query 7481 GTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACA 7540 || | || | || || ||||| |||| ||| || | ||||| | | || ||| Sbjct 19945 GTGTTACCGGAAGTGGCCTTGACGGTGAAGACACCACCCTGGATGTTCAGGAGGGAGACA 19886 Query 7541 TCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTT- 7599 || || ||||||||||| || || | ||||| ||||| || | | ||| ||| Sbjct 19885 TCGAAAGTACCACCACCGAGATCGTAGATGAGAACGTTGCGCTCCTTG---TTGGACTTG 19829 Query 7600 -----ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 |||||||||| || || || || || || || || || || || || ||| | Sbjct 19828 CCAGCGCCGAGACCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTGATGATGCGGAGAACG 19769 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || ||||| || | | || || || || || || || || ||||| |||||| Sbjct 19768 TTGAGACCAGCGATGGCACCGGCGTCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAG 19709 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || ||||| || | ||| || | | || ||||| ||||| Sbjct 19708 GCGGGGACGGTGATGACGGCCTTCTCAACCTTCTTGCCGAG 19668 >seq6557 Length=149427 Score = 123 bits (136), Expect = 3e-23 Identities = 343/521 (66%), Gaps = 15/521 (3%) Strand=Plus/Minus Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 || ||||| ||||| ||||| || || | | ||| || |||||||| | | || Sbjct 120856 AGCTCCTCGAAACGGGCACGAGTGATCTGCATCTGGAAGTCCTCGCCGTCGAAGAGGGAG 120797 Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 ||||| |||||||| | || || || | || | || ||||| || ||||| || | Sbjct 120796 TCAATCTCAATGGTGGCCTGGGCACCGCTG--GACAGGGTACGCTTGGCACGCTCGCAAG 120739 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421 | || || | |||||| |||||||| |||| ||| || || ||||| || || | Sbjct 120738 CAGTGCGGAGACGACGCAGGGCACGGGGGTCGTTGGAGATGTCCTTCTTCGACTTGCGCT 120679 Query 7422 TAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGT 7480 || || | | |||| |||| |||| || | ||||| || | ||||| | || Sbjct 120678 GGAAGTCCTTCTTGCAGTGCTCGA-GGAGGCTGGTGTCGAAGTCCTGGCCACCAAGATGG 120620 Query 7481 GTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACA 7540 || | || | || || ||||| |||| ||| || | ||||| | | || ||| Sbjct 120619 GTGTTACCGGAAGTGGCCTTGACGGTGAAGACACCACCCTGGATGTTCAGGAGGGAGACA 120560 Query 7541 TCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTT- 7599 || || ||||||||||| || || | ||||| ||||| || | | ||| ||| Sbjct 120559 TCGAAAGTACCACCACCGAGATCGTAGATGAGAACGTTGCGCTCCTTG---TTGGACTTG 120503 Query 7600 -----ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 |||||||||| || || || || || || || || || || || || ||| | Sbjct 120502 CCAGCGCCGAGACCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTGATGATGCGGAGAACG 120443 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || ||||| || | | || || || || || || || || ||||| |||||| Sbjct 120442 TTGAGACCAGCGATGGCACCGGCGTCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAG 120383 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || ||||| || | ||| || | | || ||||| ||||| Sbjct 120382 GCGGGGACGGTGATGACGGCCTTCTCAACCTTCTTGCCGAG 120342 >seq1113 Length=651782 Score = 116 bits (128), Expect = 5e-21 Identities = 175/248 (71%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 7499 TTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCC 7558 ||||| || |||||||| | |||||| | | | || ||||| || ||||||||||| Sbjct 133567 TTGACCTCGAAGATACCGTCCTCAATGGTCAGGAGAGACACATCGAAGGTACCACCACCG 133508 Query 7559 AGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATA 7618 || || || ||||| ||||| || | || ||||| ||||||||||| ||||| Sbjct 133507 AGATCGAAGATGAGGACGTTGCGCTCACCCTCGACCTTCTTGTCGAGACCGTAAGCGATG 133448 Query 7619 GCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCA 7678 || || || || || || || || ||||| || ||| || || || || | || Sbjct 133447 GCAGCAGCAGTGGGCTCGTTGATGATACGGAGGACGTTGAGACCGGCGATGAGACCGGCG 133388 Query 7679 TCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCC 7738 || || || || || || || || ||||| |||||||| ||||| || | ||| ||| | Sbjct 133387 TCCTTGGTAGCCTGACGCTGAGAGTCGTTGAAGTAGGCAGGGACAGTGATGACTGCG--C 133330 Query 7739 GTGACTTT 7746 ||||||| Sbjct 133329 ATGACTTT 133322 Score = 109 bits (120), Expect = 7e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 7499 TTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCC 7558 ||||| || |||||||| | || ||| | | | || ||||| || ||||||||||| Sbjct 132396 TTGACCTCGAAGATACCATCCTCGATGGTCAGGAGAGACACATCGAAGGTACCACCACCG 132337 Query 7559 AGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATA 7618 || || |||||||| ||||| || | || ||||| ||||||||||| ||||| Sbjct 132336 AGATCGAAAATGAGGACGTTGCGCTCACCATCAACCTTCTTGTCGAGACCGTAAGCGATG 132277 Query 7619 GCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCA 7678 || || || || || || || || ||||| || ||| || || || || | || Sbjct 132276 GCAGCGGCGGTGGGCTCGTTGATGATACGGAGGACGTTGAGACCGGCGATGAGACCAGCG 132217 Query 7679 TCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGAC 7731 || || || || || || || || ||||| |||||||| ||||| || | ||| Sbjct 132216 TCCTTGGTAGCCTGACGCTGAGAGTCGTTGAAGTAGGCAGGGACAGTGATGAC 132164 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/230 (68%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 7898 TTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCA 7957 ||||| ||| | ||||||| |||| ||||| | || || || ||||| || || Sbjct 131938 TTCATGTCGGCCTGGACCTCAGAGTCCTGGAACTTGCGGCCAATTAGGCGCTTGGCGTCG 131879 Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 || || |||| | ||||||||||| | |||||||| || || || ||||| ||||| Sbjct 131878 AAGACGGTGTGGTGAGGGTTCATGGCCATCTGGTTCTTGGCGGCATCTCCGATGAGACGC 131819 Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCA 8077 || | || | || ||||| || ||||| || || || || |||||||| || Sbjct 131818 TC---GGTGTCGTTGAAAGCGACAATGGAGGGGGTGGTGCGGTTACCCTGGTCGTTGGCG 131762 Query 8078 ATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGT 8127 ||||| || |||||| ||||| | || |||||| |||| || Sbjct 131761 ATAATATCGCACTTGTCGTTGGAGTAGACGGCAACACACGAAAACGTGGT 131712 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/230 (68%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 7898 TTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCA 7957 ||||| ||| | ||||||| |||| ||||| | || || || ||||| || || Sbjct 133109 TTCATGTCGGCCTGGACCTCAGAGTCCTGGAACTTGCGGCCAATTAGGCGCTTGGCGTCG 133050 Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 || || |||| | ||||||||||| | |||||||| || || || ||||| ||||| Sbjct 133049 AAGACGGTGTGGTGAGGGTTCATGGCCATCTGGTTCTTGGCGGCATCTCCGATGAGACGC 132990 Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCA 8077 || | || | || ||||| || ||||| || || || || |||||||| || Sbjct 132989 TC---GGTGTCGTTGAAAGCGACAATGGAGGGGGTGGTGCGGTTACCCTGGTCGTTGGCG 132933 Query 8078 ATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGT 8127 ||||| || |||||| ||||| | || |||||| |||| || Sbjct 132932 ATAATATCGCACTTGTCGTTGGAGTAGACGGCAACACACGAAAACGTGGT 132883 >seq19025 Length=5191 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/230 (68%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 7898 TTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCA 7957 ||||| ||| | ||||||| |||| ||||| | || || || ||||| || || Sbjct 145 TTCATGTCGGCCTGGACCTCAGAGTCCTGGAACTTGCGGCCAATTAGGCGCTTGGCGTCG 204 Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 || || |||| | ||||||||||| | |||||||| || || || ||||| ||||| Sbjct 205 AAGACGGTGTGGTGAGGGTTCATGGCCATCTGGTTCTTGGCGGCATCTCCGATGAGACGC 264 Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCA 8077 || | || | || ||||| || ||||| || || || || |||||||| || Sbjct 265 TC---GGTGTCGTTGAAAGCGACAATGGAGGGGGTGGTGCGGTTACCCTGGTCGTTGGCG 321 Query 8078 ATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGT 8127 ||||| || |||||| ||||| | || |||||| |||| || Sbjct 322 ATAATATCGCACTTGTCGTTGGAGTAGACGGCAACACACGAAAACGTGGT 371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634909860448040