Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq25416 125 9e-24
seq22072 123 3e-23
seq6557 123 3e-23
seq1113 116 5e-21
seq19025 84.2 3e-11
>seq25416
Length=238217
Score = 125 bits (138), Expect = 9e-24
Identities = 242/354 (68%), Gaps = 5/354 (1%)
Strand=Plus/Plus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|||||||| |||||||| | ||| || || || ||||| || || || |||| ||
Sbjct 79328 TCGAAATCCTCACCACCAAGGTGGGTGTCACCGGCGGTGGCAAGAACCTCGAAGACGCCC 79387
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
|||||| | | || ||||| || ||||||||||| || || | || | |
Sbjct 79388 TGGTCAATGGACAGGAGAGAGACATCGAAGGTACCACCACCGAGATCGTA---GACAATG 79444
Query 7577 TTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635
|| | || ||| | | | ||| || || ||||| ||||| || || || || || ||
Sbjct 79445 ATC-TGGCGCTCGCCGTCGAGCTTGTCAAGGCCGTAGGCGATGGCGGCGGCGGTGGGCTC 79503
Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695
|| | ||||| || ||| ||||| ||||| | ||||| || || || || ||
Sbjct 79504 GTTGACGATACGGAGGACGTTAAGGCCGGCAATGACACCAGCATCCTTGGTGGCCTGGCG 79563
Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755
|| ||||| |||||||| ||||| || ||||| |||| ||||| ||||| |||||
Sbjct 79564 CTGGTTGTCGTTGAAGTAGGCGGGGACGGTGACGACGGCGTGAGTGACCTTCTTGCCGAG 79623
Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809
|| | || ||| | || ||||| ||| ||||| ||| | || ||||| ||
Sbjct 79624 GTAGGCCTCAGCGGTGTCCTTCATCTTGCCAAGAATCATGGCGGAGATCTCCTC 79677
>seq22072
Length=25182
Score = 123 bits (136), Expect = 3e-23
Identities = 343/521 (66%), Gaps = 15/521 (3%)
Strand=Plus/Minus
Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303
|| ||||| ||||| ||||| || || | | ||| || |||||||| | | ||
Sbjct 20182 AGCTCCTCGAAACGGGCACGAGTGATCTGCATCTGGAAGTCCTCGCCGTCGAAGAGGGAG 20123
Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361
||||| |||||||| | || || || | || | || ||||| || ||||| || |
Sbjct 20122 TCAATCTCAATGGTGGCCTGGGCACCGCTG--GACAGGGTACGCTTGGCACGCTCGCAAG 20065
Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421
| || || | |||||| |||||||| |||| ||| || || ||||| || || |
Sbjct 20064 CAGTGCGGAGACGACGCAGGGCACGGGGGTCGTTGGAGATGTCCTTCTTCGACTTGCGCT 20005
Query 7422 TAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGT 7480
|| || | | |||| |||| |||| || | ||||| || | ||||| | ||
Sbjct 20004 GGAAGTCCTTCTTGCAGTGCTCGA-GGAGGCTGGTGTCGAAGTCCTGGCCACCAAGATGG 19946
Query 7481 GTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACA 7540
|| | || | || || ||||| |||| ||| || | ||||| | | || |||
Sbjct 19945 GTGTTACCGGAAGTGGCCTTGACGGTGAAGACACCACCCTGGATGTTCAGGAGGGAGACA 19886
Query 7541 TCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTT- 7599
|| || ||||||||||| || || | ||||| ||||| || | | ||| |||
Sbjct 19885 TCGAAAGTACCACCACCGAGATCGTAGATGAGAACGTTGCGCTCCTTG---TTGGACTTG 19829
Query 7600 -----ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654
|||||||||| || || || || || || || || || || || || ||| |
Sbjct 19828 CCAGCGCCGAGACCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTGATGATGCGGAGAACG 19769
Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714
|| || ||||| || | | || || || || || || || || ||||| ||||||
Sbjct 19768 TTGAGACCAGCGATGGCACCGGCGTCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAG 19709
Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755
|| ||||| || | ||| || | | || ||||| |||||
Sbjct 19708 GCGGGGACGGTGATGACGGCCTTCTCAACCTTCTTGCCGAG 19668
>seq6557
Length=149427
Score = 123 bits (136), Expect = 3e-23
Identities = 343/521 (66%), Gaps = 15/521 (3%)
Strand=Plus/Minus
Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303
|| ||||| ||||| ||||| || || | | ||| || |||||||| | | ||
Sbjct 120856 AGCTCCTCGAAACGGGCACGAGTGATCTGCATCTGGAAGTCCTCGCCGTCGAAGAGGGAG 120797
Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361
||||| |||||||| | || || || | || | || ||||| || ||||| || |
Sbjct 120796 TCAATCTCAATGGTGGCCTGGGCACCGCTG--GACAGGGTACGCTTGGCACGCTCGCAAG 120739
Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421
| || || | |||||| |||||||| |||| ||| || || ||||| || || |
Sbjct 120738 CAGTGCGGAGACGACGCAGGGCACGGGGGTCGTTGGAGATGTCCTTCTTCGACTTGCGCT 120679
Query 7422 TAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGT 7480
|| || | | |||| |||| |||| || | ||||| || | ||||| | ||
Sbjct 120678 GGAAGTCCTTCTTGCAGTGCTCGA-GGAGGCTGGTGTCGAAGTCCTGGCCACCAAGATGG 120620
Query 7481 GTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACA 7540
|| | || | || || ||||| |||| ||| || | ||||| | | || |||
Sbjct 120619 GTGTTACCGGAAGTGGCCTTGACGGTGAAGACACCACCCTGGATGTTCAGGAGGGAGACA 120560
Query 7541 TCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTT- 7599
|| || ||||||||||| || || | ||||| ||||| || | | ||| |||
Sbjct 120559 TCGAAAGTACCACCACCGAGATCGTAGATGAGAACGTTGCGCTCCTTG---TTGGACTTG 120503
Query 7600 -----ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654
|||||||||| || || || || || || || || || || || || ||| |
Sbjct 120502 CCAGCGCCGAGACCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTGATGATGCGGAGAACG 120443
Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714
|| || ||||| || | | || || || || || || || || ||||| ||||||
Sbjct 120442 TTGAGACCAGCGATGGCACCGGCGTCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAG 120383
Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755
|| ||||| || | ||| || | | || ||||| |||||
Sbjct 120382 GCGGGGACGGTGATGACGGCCTTCTCAACCTTCTTGCCGAG 120342
>seq1113
Length=651782
Score = 116 bits (128), Expect = 5e-21
Identities = 175/248 (71%), Gaps = 2/248 (1%)
Strand=Plus/Minus
Query 7499 TTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCC 7558
||||| || |||||||| | |||||| | | | || ||||| || |||||||||||
Sbjct 133567 TTGACCTCGAAGATACCGTCCTCAATGGTCAGGAGAGACACATCGAAGGTACCACCACCG 133508
Query 7559 AGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATA 7618
|| || || ||||| ||||| || | || ||||| ||||||||||| |||||
Sbjct 133507 AGATCGAAGATGAGGACGTTGCGCTCACCCTCGACCTTCTTGTCGAGACCGTAAGCGATG 133448
Query 7619 GCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCA 7678
|| || || || || || || || ||||| || ||| || || || || | ||
Sbjct 133447 GCAGCAGCAGTGGGCTCGTTGATGATACGGAGGACGTTGAGACCGGCGATGAGACCGGCG 133388
Query 7679 TCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCC 7738
|| || || || || || || || ||||| |||||||| ||||| || | ||| ||| |
Sbjct 133387 TCCTTGGTAGCCTGACGCTGAGAGTCGTTGAAGTAGGCAGGGACAGTGATGACTGCG--C 133330
Query 7739 GTGACTTT 7746
|||||||
Sbjct 133329 ATGACTTT 133322
Score = 109 bits (120), Expect = 7e-19
Identities = 164/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 7499 TTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCC 7558
||||| || |||||||| | || ||| | | | || ||||| || |||||||||||
Sbjct 132396 TTGACCTCGAAGATACCATCCTCGATGGTCAGGAGAGACACATCGAAGGTACCACCACCG 132337
Query 7559 AGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATA 7618
|| || |||||||| ||||| || | || ||||| ||||||||||| |||||
Sbjct 132336 AGATCGAAAATGAGGACGTTGCGCTCACCATCAACCTTCTTGTCGAGACCGTAAGCGATG 132277
Query 7619 GCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCA 7678
|| || || || || || || || ||||| || ||| || || || || | ||
Sbjct 132276 GCAGCGGCGGTGGGCTCGTTGATGATACGGAGGACGTTGAGACCGGCGATGAGACCAGCG 132217
Query 7679 TCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGAC 7731
|| || || || || || || || ||||| |||||||| ||||| || | |||
Sbjct 132216 TCCTTGGTAGCCTGACGCTGAGAGTCGTTGAAGTAGGCAGGGACAGTGATGAC 132164
Score = 84.2 bits (92), Expect = 3e-11
Identities = 157/230 (68%), Gaps = 3/230 (1%)
Strand=Plus/Minus
Query 7898 TTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCA 7957
||||| ||| | ||||||| |||| ||||| | || || || ||||| || ||
Sbjct 131938 TTCATGTCGGCCTGGACCTCAGAGTCCTGGAACTTGCGGCCAATTAGGCGCTTGGCGTCG 131879
Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017
|| || |||| | ||||||||||| | |||||||| || || || ||||| |||||
Sbjct 131878 AAGACGGTGTGGTGAGGGTTCATGGCCATCTGGTTCTTGGCGGCATCTCCGATGAGACGC 131819
Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCA 8077
|| | || | || ||||| || ||||| || || || || |||||||| ||
Sbjct 131818 TC---GGTGTCGTTGAAAGCGACAATGGAGGGGGTGGTGCGGTTACCCTGGTCGTTGGCG 131762
Query 8078 ATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGT 8127
||||| || |||||| ||||| | || |||||| |||| ||
Sbjct 131761 ATAATATCGCACTTGTCGTTGGAGTAGACGGCAACACACGAAAACGTGGT 131712
Score = 84.2 bits (92), Expect = 3e-11
Identities = 157/230 (68%), Gaps = 3/230 (1%)
Strand=Plus/Minus
Query 7898 TTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCA 7957
||||| ||| | ||||||| |||| ||||| | || || || ||||| || ||
Sbjct 133109 TTCATGTCGGCCTGGACCTCAGAGTCCTGGAACTTGCGGCCAATTAGGCGCTTGGCGTCG 133050
Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017
|| || |||| | ||||||||||| | |||||||| || || || ||||| |||||
Sbjct 133049 AAGACGGTGTGGTGAGGGTTCATGGCCATCTGGTTCTTGGCGGCATCTCCGATGAGACGC 132990
Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCA 8077
|| | || | || ||||| || ||||| || || || || |||||||| ||
Sbjct 132989 TC---GGTGTCGTTGAAAGCGACAATGGAGGGGGTGGTGCGGTTACCCTGGTCGTTGGCG 132933
Query 8078 ATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGT 8127
||||| || |||||| ||||| | || |||||| |||| ||
Sbjct 132932 ATAATATCGCACTTGTCGTTGGAGTAGACGGCAACACACGAAAACGTGGT 132883
>seq19025
Length=5191
Score = 84.2 bits (92), Expect = 3e-11
Identities = 157/230 (68%), Gaps = 3/230 (1%)
Strand=Plus/Plus
Query 7898 TTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCA 7957
||||| ||| | ||||||| |||| ||||| | || || || ||||| || ||
Sbjct 145 TTCATGTCGGCCTGGACCTCAGAGTCCTGGAACTTGCGGCCAATTAGGCGCTTGGCGTCG 204
Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017
|| || |||| | ||||||||||| | |||||||| || || || ||||| |||||
Sbjct 205 AAGACGGTGTGGTGAGGGTTCATGGCCATCTGGTTCTTGGCGGCATCTCCGATGAGACGC 264
Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCA 8077
|| | || | || ||||| || ||||| || || || || |||||||| ||
Sbjct 265 TC---GGTGTCGTTGAAAGCGACAATGGAGGGGGTGGTGCGGTTACCCTGGTCGTTGGCG 321
Query 8078 ATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGT 8127
||||| || |||||| ||||| | || |||||| |||| ||
Sbjct 322 ATAATATCGCACTTGTCGTTGGAGTAGACGGCAACACACGAAAACGTGGT 371
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 634909860448040
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