Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq24749 230 3e-55
seq27938 161 1e-34
seq28027 145 9e-30
seq18890 145 9e-30
seq1558 87.8 2e-12
>seq24749
Length=740841
Score = 230 bits (254), Expect = 3e-55
Identities = 905/1403 (65%), Gaps = 49/1403 (3%)
Strand=Plus/Plus
Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATA---TTGATTC 111667
||| ||| ||||| | ||||| || | |||||||| |||||| || | ||||
Sbjct 415678 CCCGCAGCACATGATTATGCGTGTTTCCGTCGGTATC--TGGGGA-GACAACGTTGAGCG 415734
Query 111668 TGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCT 111727
||| | ||||| ||| || |||||| | | |||| |||||| | || |||||
Sbjct 415735 TGTCATTGAGACGTACAACCTCATGTCCAGCAAATTCTTCACACACGCATCTCCTACCCT 415794
Query 111728 CTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGA 111787
|||||||||||| || || | || |||| || ||||| ||| | |||||
Sbjct 415795 CTTCAACGCTGGCACGCCTCAGGCTCAGCTGTCGTCCTGCTTCCTGGTTGACATGAAGGA 415854
Query 111788 GGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGC 111847
|| || | || || |||| ||| |||| |||||| ||||| ||| |||
Sbjct 415855 TGACAGCATTGAAGGTATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGC 415914
Query 111848 TGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTAC 111907
||||||||| || || || ||||| || | |||| ||| ||| || ||
Sbjct 415915 TGGTGGTATTGGTCTGAACGTCCATCGCATCCGTGCCACTGGCTCTTACATTGCCGGCAC 415974
Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967
|| || ||| | || || | || ||||||||||| || ||| ||| ||||||||
Sbjct 415975 CAACGGCACTTCAAACGGCATCACGCCCATGCTTCGCGTCTTCAACAACACGGCGCGCTA 416034
Query 111968 TGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATG 112021
|| |||| | || ||||| | || || | || |||| |||||||||||
Sbjct 416035 CGTTGACCAGGGCGGCAACAAGCGTCCC---GGCGCTTTTGCCATCTACCTTGAGCCATG 416091
Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CG 112079
|||||| ||| || | ||||||||||| | || ||||| || | ||||| | ||
Sbjct 416092 GCACGCTGATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAAGTTCG 416151
Query 112080 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139
|| | |||||||| ||| || || ||||| || ||||||||||||||| | || |||
Sbjct 416152 CGCT--CGCGATCTTTTCCTGGCCCTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAG 416209
Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG 112199
||| ||| | ||| ||||| | || || || || || || || | || |
Sbjct 416210 AAGAACGGCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTAC 416269
Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC---- 112255
||||| |||||||| ||| | ||| ||||||||| ||| | ||| | ||
Sbjct 416270 GGTGACGAGTTTGAGGCCTTGTACGAGAAGTACGAG-----AAGGCTGGCAAGGGCCGCA 416324
Query 112256 -GACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGT 112313
||| | | || || || | | ||| | || | ||| || |||| |||||||| ||
Sbjct 416325 AGACCAT-CAAGGCGCAGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGC 416383
Query 112314 ACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGT 112373
| || | ||||| ||||| || ||| |||| ||||| || || ||||| | |||
Sbjct 416384 AACCCCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGT 416443
Query 112374 GTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACG 112433
|| || |||||||| || ||||| || | || | | | ||||||
Sbjct 416444 ACCATTCGCAGCTCCAACCTGTGCACAGAGATTGTCGAGTACTCGGCACCCGATGAGGTT 416503
Query 112434 GCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC- 112492
|| || || ||||| || || | || || ||| || || ||| | | |||| | |
Sbjct 416504 GCCGTCTGCAACCTGGCCTCTCTGGCCCTGCCCGCCTACGTTGAT-TACA-ACAACGGCG 416561
Query 112493 -ATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAG 112551
| ||| | | || |||||| | || || | ||| | ||||| |||||
Sbjct 416562 TGTATGACTTCAAGAAGCTCCACCAGGTCACTCAGGTCGTCGTCAGGAACCTCAACAGGA 416621
Query 112552 TTATTGATAGAAATTTTTACCCCG---TTGAGACTGCTCGTAAATCTAATATGAGACACC 112608
| || || || |||||||| | ||| ||||| || || ||| | || |
Sbjct 416622 TCATCGACGTGAACCATTACCCCGTCATCGAG---GCTCGCAACAGCAACATGCGCCATC 416678
Query 112609 GTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCAT 112668
| || ||||| || |||||||| || | || |||| ||| || | ||| | |
Sbjct 416679 GGCCCATTGGCCTTGGTGTCCAGGGCTTGGCTGATGCTTTCCTTGCTCTCCGCATGCCCT 416738
Query 112669 TTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCG 112728
|||| || || || ||||| |||| || || |||||||| || || ||||| |
Sbjct 416739 TTGAGTCGCCTGAGGCCAAGGAGCTCAACAAGCAGATCTTTGAGACCATCTACCACGCTG 416798
Query 112729 CTCTTGAGGCGAGT--TCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGG 112786
| | ||| | || | || | || ||| || || || || |||| ||||||
Sbjct 416799 C-CCTGA-CCATGTCATGCAAGCTCGCTCAGGAGGAAGGCCCCTACTCCACCTATGAGGG 416856
Query 112787 TTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT--T 112844
|| || | || || || | ||||||| || |||| |||| || | || | ||
Sbjct 416857 CTCGCCCGTCTCCCAGGGTATCCTTCAATACGACATGT-GGAACGTCAAGCCTA-CTGAC 416914
Query 112845 CACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTT 112904
| | ||||||| || |||||| | |||||| | | || | ||||||||||||
Sbjct 416915 CTTTGGGACTGGGCCGACCTCAAGAGCCAGATCAAGCAACATGGCGTCCGTAACAGTCTT 416974
Query 112905 TTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTT 112964
| |||| || ||||| || ||| ||| | || ||| | || || || || |||||
Sbjct 416975 CTCGTGGCGCCCATGCCCACGGCCAGTACCTCGCAGATCCTTGGCAACAACGAGTGCTTC 417034
Query 112965 GAACCCTACACGACGAACATCTA 112987
|| || |||||| | ||||||||
Sbjct 417035 GAGCCTTACACGTCCAACATCTA 417057
>seq27938
Length=10276
Score = 161 bits (178), Expect = 1e-34
Identities = 410/619 (66%), Gaps = 25/619 (4%)
Strand=Plus/Minus
Query 111801 GGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGG 111860
|| || |||| ||| |||| |||||| ||||| ||| |||||||||||| ||
Sbjct 10267 GGTATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATTGGT 10208
Query 111861 ATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAATGGTCAATCA 111920
|| || ||||| || | |||| ||| ||| || || || || |||
Sbjct 10207 CTGAACGTCCATCGCATCCGTGCCACTGGCTCTTACATTGCCGGCACCAACGGCACTTCA 10148
Query 111921 GATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCT 111980
| || || | || ||||||||||| || ||| ||| |||||||| || |||| |
Sbjct 10147 AACGGCATCACGCCCATGCTTCGCGTCTTCAACAACACGGCGCGCTACGTTGACCAGGGC 10088
Query 111981 GG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATC 112034
|| ||||| | || || | || |||| ||||||||||||||||| ||| ||
Sbjct 10087 GGCAACAAGCGTCCC---GGCGCTTTTGCCATCTACCTTGAGCCATGGCACGCTGATGTC 10031
Query 112035 ATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CGCGGTGCCGCGATC 112092
| ||||||||||| | || ||||| || | ||||| | |||| | |||||||
Sbjct 10030 TTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAAGTTCGCGCT--CGCGATC 9973
Query 112093 TCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATT 112152
| ||| || || ||||| || ||||||||||||||| | || ||| ||| ||| | |
Sbjct 9972 TTTTCCTGGCCCTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAGAAGAACGGCGACT 9913
Query 112153 GGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTG 112212
|| ||||| | || || || || || || || | || | ||||| |||||||
Sbjct 9912 GGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTACGGTGACGAGTTTG 9853
Query 112213 AAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC-----GACGGTGCCAGC 112267
| ||| | ||| ||||||||| ||| | ||| | || ||| | | ||
Sbjct 9852 AGGCCTTGTACGAGAAGTACGAG-----AAGGCTGGCAAGGGCCGCAAGACCAT-CAAGG 9799
Query 112268 TGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGC 112326
|| || | | ||| | || | ||| || |||| |||||||| || | || | ||||
Sbjct 9798 CGCAGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGC 9739
Query 112327 TTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTT 112386
| ||||| || ||| |||| ||||| || || ||||| | ||| || || |
Sbjct 9738 TCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGTACCATTCGCAGCT 9679
Query 112387 CCAACCTCTGTACAGAAAT 112405
||||||| || ||||| ||
Sbjct 9678 CCAACCTGTGCACAGAGAT 9660
>seq28027
Length=10271
Score = 145 bits (160), Expect = 9e-30
Identities = 163/217 (75%), Gaps = 6/217 (3%)
Strand=Plus/Minus
Query 102107 AACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAA 102163
||||||||| || |||| ||||| || || ||||| ||| ||| | |||| ||
Sbjct 5337 AACAGTTCCCTGCATTCGCAAGAAGGCTGACTGGGCCTTGACATGGATCACCGATAAGAA 5278
Query 102164 GTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 102223
||| | ||||||| || ||| |||| || ||| ||||||||||||||||||
Sbjct 5277 GTC---TACCTTTGCCACCCGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAG 5221
Query 102224 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 102283
||| ||||| | | || | ||||||||||||||||| |||||||| || || ||
Sbjct 5220 CGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTT 5161
Query 102284 CTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320
|||||||||||| ||||||||||||||||| || |||
Sbjct 5160 CTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCAC 5124
>seq18890
Length=446397
Score = 145 bits (160), Expect = 9e-30
Identities = 163/217 (75%), Gaps = 6/217 (3%)
Strand=Plus/Minus
Query 102107 AACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAA 102163
||||||||| || |||| ||||| || || ||||| ||| ||| | |||| ||
Sbjct 160568 AACAGTTCCCTGCATTCGCAAGAAGGCTGACTGGGCCTTGACATGGATCACCGATAAGAA 160509
Query 102164 GTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 102223
||| | ||||||| || ||| |||| || ||| ||||||||||||||||||
Sbjct 160508 GTC---TACCTTTGCCACCCGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAG 160452
Query 102224 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 102283
||| ||||| | | || | ||||||||||||||||| |||||||| || || ||
Sbjct 160451 CGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTT 160392
Query 102284 CTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320
|||||||||||| ||||||||||||||||| || |||
Sbjct 160391 CTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCAC 160355
Score = 145 bits (160), Expect = 9e-30
Identities = 163/217 (75%), Gaps = 6/217 (3%)
Strand=Plus/Plus
Query 102107 AACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAA 102163
||||||||| || |||| ||||| || || ||||| ||| ||| | |||| ||
Sbjct 409062 AACAGTTCCCTGCATTCGCAAGAAGGCTGACTGGGCCTTGACATGGATCACCGATAAGAA 409121
Query 102164 GTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 102223
||| | ||||||| || ||| |||| || ||| ||||||||||||||||||
Sbjct 409122 GTC---TACCTTTGCCACCCGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAG 409178
Query 102224 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 102283
||| ||||| | | || | ||||||||||||||||| |||||||| || || ||
Sbjct 409179 CGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTT 409238
Query 102284 CTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320
|||||||||||| ||||||||||||||||| || |||
Sbjct 409239 CTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCAC 409275
>seq1558
Length=193658
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/226 (69%), Gaps = 4/226 (2%)
Strand=Plus/Plus
Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 16124
|| |||||||| |||||||||| |||||| || || | ||| || | | || ||
Sbjct 135302 GCGTCAATCTCGTCAATGAAGATGATGCAGGGCGCGTTCTTGCGGGCCGATGCGAATAGG 135361
Query 16125 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG--CGGCGGAAC 16182
|| || || ||| || || || || ||||||||||||||||| | | | || ||
Sbjct 135362 TCACGCACTCGCGAGGAACCGACGCCGACAAACATCTCCACAAACTCGGAACCGCTGACG 135421
Query 16183 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 16242
| || ||| || || ||| || || || | || |||||| || ||||||||||
Sbjct 135422 CT--GAAGAAAGGAACCCCAGACTCGCCTGCCGTTGCCTTGGCGAGCAGCGTCTTACCCG 135479
Query 16243 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288
|||| || || | || | |||||| || ||||||||||| ||
Sbjct 135480 TACCGGGGGGTCCAGACAGAATGGCACCACGGGGAATCTTGGCACC 135525
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620524511658320
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