Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq24749 230 3e-55 seq27938 161 1e-34 seq28027 145 9e-30 seq18890 145 9e-30 seq1558 87.8 2e-12 >seq24749 Length=740841 Score = 230 bits (254), Expect = 3e-55 Identities = 905/1403 (65%), Gaps = 49/1403 (3%) Strand=Plus/Plus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATA---TTGATTC 111667 ||| ||| ||||| | ||||| || | |||||||| |||||| || | |||| Sbjct 415678 CCCGCAGCACATGATTATGCGTGTTTCCGTCGGTATC--TGGGGA-GACAACGTTGAGCG 415734 Query 111668 TGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCT 111727 ||| | ||||| ||| || |||||| | | |||| |||||| | || ||||| Sbjct 415735 TGTCATTGAGACGTACAACCTCATGTCCAGCAAATTCTTCACACACGCATCTCCTACCCT 415794 Query 111728 CTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGA 111787 |||||||||||| || || | || |||| || ||||| ||| | ||||| Sbjct 415795 CTTCAACGCTGGCACGCCTCAGGCTCAGCTGTCGTCCTGCTTCCTGGTTGACATGAAGGA 415854 Query 111788 GGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGC 111847 || || | || || |||| ||| |||| |||||| ||||| ||| ||| Sbjct 415855 TGACAGCATTGAAGGTATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGC 415914 Query 111848 TGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTAC 111907 ||||||||| || || || ||||| || | |||| ||| ||| || || Sbjct 415915 TGGTGGTATTGGTCTGAACGTCCATCGCATCCGTGCCACTGGCTCTTACATTGCCGGCAC 415974 Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 || || ||| | || || | || ||||||||||| || ||| ||| |||||||| Sbjct 415975 CAACGGCACTTCAAACGGCATCACGCCCATGCTTCGCGTCTTCAACAACACGGCGCGCTA 416034 Query 111968 TGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATG 112021 || |||| | || ||||| | || || | || |||| ||||||||||| Sbjct 416035 CGTTGACCAGGGCGGCAACAAGCGTCCC---GGCGCTTTTGCCATCTACCTTGAGCCATG 416091 Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CG 112079 |||||| ||| || | ||||||||||| | || ||||| || | ||||| | || Sbjct 416092 GCACGCTGATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAAGTTCG 416151 Query 112080 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139 || | |||||||| ||| || || ||||| || ||||||||||||||| | || ||| Sbjct 416152 CGCT--CGCGATCTTTTCCTGGCCCTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAG 416209 Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG 112199 ||| ||| | ||| ||||| | || || || || || || || | || | Sbjct 416210 AAGAACGGCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTAC 416269 Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC---- 112255 ||||| |||||||| ||| | ||| ||||||||| ||| | ||| | || Sbjct 416270 GGTGACGAGTTTGAGGCCTTGTACGAGAAGTACGAG-----AAGGCTGGCAAGGGCCGCA 416324 Query 112256 -GACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGT 112313 ||| | | || || || | | ||| | || | ||| || |||| |||||||| || Sbjct 416325 AGACCAT-CAAGGCGCAGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGC 416383 Query 112314 ACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGT 112373 | || | ||||| ||||| || ||| |||| ||||| || || ||||| | ||| Sbjct 416384 AACCCCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGT 416443 Query 112374 GTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACG 112433 || || |||||||| || ||||| || | || | | | |||||| Sbjct 416444 ACCATTCGCAGCTCCAACCTGTGCACAGAGATTGTCGAGTACTCGGCACCCGATGAGGTT 416503 Query 112434 GCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC- 112492 || || || ||||| || || | || || ||| || || ||| | | |||| | | Sbjct 416504 GCCGTCTGCAACCTGGCCTCTCTGGCCCTGCCCGCCTACGTTGAT-TACA-ACAACGGCG 416561 Query 112493 -ATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAG 112551 | ||| | | || |||||| | || || | ||| | ||||| ||||| Sbjct 416562 TGTATGACTTCAAGAAGCTCCACCAGGTCACTCAGGTCGTCGTCAGGAACCTCAACAGGA 416621 Query 112552 TTATTGATAGAAATTTTTACCCCG---TTGAGACTGCTCGTAAATCTAATATGAGACACC 112608 | || || || |||||||| | ||| ||||| || || ||| | || | Sbjct 416622 TCATCGACGTGAACCATTACCCCGTCATCGAG---GCTCGCAACAGCAACATGCGCCATC 416678 Query 112609 GTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCAT 112668 | || ||||| || |||||||| || | || |||| ||| || | ||| | | Sbjct 416679 GGCCCATTGGCCTTGGTGTCCAGGGCTTGGCTGATGCTTTCCTTGCTCTCCGCATGCCCT 416738 Query 112669 TTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCG 112728 |||| || || || ||||| |||| || || |||||||| || || ||||| | Sbjct 416739 TTGAGTCGCCTGAGGCCAAGGAGCTCAACAAGCAGATCTTTGAGACCATCTACCACGCTG 416798 Query 112729 CTCTTGAGGCGAGT--TCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGG 112786 | | ||| | || | || | || ||| || || || || |||| |||||| Sbjct 416799 C-CCTGA-CCATGTCATGCAAGCTCGCTCAGGAGGAAGGCCCCTACTCCACCTATGAGGG 416856 Query 112787 TTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT--T 112844 || || | || || || | ||||||| || |||| |||| || | || | || Sbjct 416857 CTCGCCCGTCTCCCAGGGTATCCTTCAATACGACATGT-GGAACGTCAAGCCTA-CTGAC 416914 Query 112845 CACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTT 112904 | | ||||||| || |||||| | |||||| | | || | |||||||||||| Sbjct 416915 CTTTGGGACTGGGCCGACCTCAAGAGCCAGATCAAGCAACATGGCGTCCGTAACAGTCTT 416974 Query 112905 TTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTT 112964 | |||| || ||||| || ||| ||| | || ||| | || || || || ||||| Sbjct 416975 CTCGTGGCGCCCATGCCCACGGCCAGTACCTCGCAGATCCTTGGCAACAACGAGTGCTTC 417034 Query 112965 GAACCCTACACGACGAACATCTA 112987 || || |||||| | |||||||| Sbjct 417035 GAGCCTTACACGTCCAACATCTA 417057 >seq27938 Length=10276 Score = 161 bits (178), Expect = 1e-34 Identities = 410/619 (66%), Gaps = 25/619 (4%) Strand=Plus/Minus Query 111801 GGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGG 111860 || || |||| ||| |||| |||||| ||||| ||| |||||||||||| || Sbjct 10267 GGTATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATTGGT 10208 Query 111861 ATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAATGGTCAATCA 111920 || || ||||| || | |||| ||| ||| || || || || ||| Sbjct 10207 CTGAACGTCCATCGCATCCGTGCCACTGGCTCTTACATTGCCGGCACCAACGGCACTTCA 10148 Query 111921 GATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCT 111980 | || || | || ||||||||||| || ||| ||| |||||||| || |||| | Sbjct 10147 AACGGCATCACGCCCATGCTTCGCGTCTTCAACAACACGGCGCGCTACGTTGACCAGGGC 10088 Query 111981 GG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATC 112034 || ||||| | || || | || |||| ||||||||||||||||| ||| || Sbjct 10087 GGCAACAAGCGTCCC---GGCGCTTTTGCCATCTACCTTGAGCCATGGCACGCTGATGTC 10031 Query 112035 ATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CGCGGTGCCGCGATC 112092 | ||||||||||| | || ||||| || | ||||| | |||| | ||||||| Sbjct 10030 TTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAAGTTCGCGCT--CGCGATC 9973 Query 112093 TCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATT 112152 | ||| || || ||||| || ||||||||||||||| | || ||| ||| ||| | | Sbjct 9972 TTTTCCTGGCCCTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAGAAGAACGGCGACT 9913 Query 112153 GGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTG 112212 || ||||| | || || || || || || || | || | ||||| ||||||| Sbjct 9912 GGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTACGGTGACGAGTTTG 9853 Query 112213 AAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC-----GACGGTGCCAGC 112267 | ||| | ||| ||||||||| ||| | ||| | || ||| | | || Sbjct 9852 AGGCCTTGTACGAGAAGTACGAG-----AAGGCTGGCAAGGGCCGCAAGACCAT-CAAGG 9799 Query 112268 TGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGC 112326 || || | | ||| | || | ||| || |||| |||||||| || | || | |||| Sbjct 9798 CGCAGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGC 9739 Query 112327 TTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTT 112386 | ||||| || ||| |||| ||||| || || ||||| | ||| || || | Sbjct 9738 TCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGTACCATTCGCAGCT 9679 Query 112387 CCAACCTCTGTACAGAAAT 112405 ||||||| || ||||| || Sbjct 9678 CCAACCTGTGCACAGAGAT 9660 >seq28027 Length=10271 Score = 145 bits (160), Expect = 9e-30 Identities = 163/217 (75%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 102107 AACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAA 102163 ||||||||| || |||| ||||| || || ||||| ||| ||| | |||| || Sbjct 5337 AACAGTTCCCTGCATTCGCAAGAAGGCTGACTGGGCCTTGACATGGATCACCGATAAGAA 5278 Query 102164 GTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 102223 ||| | ||||||| || ||| |||| || ||| |||||||||||||||||| Sbjct 5277 GTC---TACCTTTGCCACCCGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAG 5221 Query 102224 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 102283 ||| ||||| | | || | ||||||||||||||||| |||||||| || || || Sbjct 5220 CGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTT 5161 Query 102284 CTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 |||||||||||| ||||||||||||||||| || ||| Sbjct 5160 CTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCAC 5124 >seq18890 Length=446397 Score = 145 bits (160), Expect = 9e-30 Identities = 163/217 (75%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 102107 AACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAA 102163 ||||||||| || |||| ||||| || || ||||| ||| ||| | |||| || Sbjct 160568 AACAGTTCCCTGCATTCGCAAGAAGGCTGACTGGGCCTTGACATGGATCACCGATAAGAA 160509 Query 102164 GTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 102223 ||| | ||||||| || ||| |||| || ||| |||||||||||||||||| Sbjct 160508 GTC---TACCTTTGCCACCCGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAG 160452 Query 102224 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 102283 ||| ||||| | | || | ||||||||||||||||| |||||||| || || || Sbjct 160451 CGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTT 160392 Query 102284 CTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 |||||||||||| ||||||||||||||||| || ||| Sbjct 160391 CTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCAC 160355 Score = 145 bits (160), Expect = 9e-30 Identities = 163/217 (75%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 102107 AACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAA 102163 ||||||||| || |||| ||||| || || ||||| ||| ||| | |||| || Sbjct 409062 AACAGTTCCCTGCATTCGCAAGAAGGCTGACTGGGCCTTGACATGGATCACCGATAAGAA 409121 Query 102164 GTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 102223 ||| | ||||||| || ||| |||| || ||| |||||||||||||||||| Sbjct 409122 GTC---TACCTTTGCCACCCGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAG 409178 Query 102224 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 102283 ||| ||||| | | || | ||||||||||||||||| |||||||| || || || Sbjct 409179 CGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTT 409238 Query 102284 CTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 |||||||||||| ||||||||||||||||| || ||| Sbjct 409239 CTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCAC 409275 >seq1558 Length=193658 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 16124 || |||||||| |||||||||| |||||| || || | ||| || | | || || Sbjct 135302 GCGTCAATCTCGTCAATGAAGATGATGCAGGGCGCGTTCTTGCGGGCCGATGCGAATAGG 135361 Query 16125 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG--CGGCGGAAC 16182 || || || ||| || || || || ||||||||||||||||| | | | || || Sbjct 135362 TCACGCACTCGCGAGGAACCGACGCCGACAAACATCTCCACAAACTCGGAACCGCTGACG 135421 Query 16183 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 16242 | || ||| || || ||| || || || | || |||||| || |||||||||| Sbjct 135422 CT--GAAGAAAGGAACCCCAGACTCGCCTGCCGTTGCCTTGGCGAGCAGCGTCTTACCCG 135479 Query 16243 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 |||| || || | || | |||||| || ||||||||||| || Sbjct 135480 TACCGGGGGGTCCAGACAGAATGGCACCACGGGGAATCTTGGCACC 135525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620524511658320