Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq24749 199 5e-46 seq1558 159 4e-34 seq27938 122 1e-22 seq8958 100 3e-16 seq11514 93.3 5e-14 >seq24749 Length=740841 Score = 199 bits (220), Expect = 5e-46 Identities = 1016/1599 (64%), Gaps = 57/1599 (4%) Strand=Plus/Minus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGT---CGATGAT 109556 ||||| ||||| ||||| |||||||| ||||||||| || ||||| | | | | | Sbjct 417310 GTTCAAGGACTGGGACTGGTCGATGAAGGCACCACGATCGGCAGCCATCTGCACAACGGT 417251 Query 109557 ACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTC 109616 | || | ||| ||||||||||||||||||| ||||| || ||||||||| Sbjct 417250 GCGCT---GAGAAATCTCCCAGACAGTCTTGTACAGGGACTTGACGTCGGCGGGAATGTT 417194 Query 109617 CACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGA---GATCCTTCATCTCTTTC-G 109672 |||||| || || || |||| || | |||| ||| |||||| || || | Sbjct 417193 GGGGATGTTCTGGATGGA---ACCATTCTCGGCAATGATGCGATTCTTCATG-CTATCAG 417138 Query 109673 ACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCAC 109732 |||| ||||| | | ||||| | | || |||||| || || || | Sbjct 417137 ACCAAAGACCCATGTCAACAAGATCCTTGAGCAGCCAGGGGTTGACGACCTGGAACTCGC 417078 Query 109733 CAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGC 109792 | || || || || |||||||||| | |||||| || ||||| ||||| ||||||| Sbjct 417077 CGGCGAGCACACGGCGCTGGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCGTTGTTGC 417018 Query 109793 CTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGAC 109852 | ||||| || | || || ||||||||||| |||| |||||||||||| |||| | Sbjct 417017 CAAGGATCTGCGAGGTACTGGCCGTGGGCATGGGCGCCACGAGAAGACTGTTACGGACGC 416958 Query 109853 CCTTCGTCTTTACCCG-CTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTC 109911 | | ||| | | | ||| | | || |||| || || | || || | | Sbjct 416957 CATGTTGCTTGATCTGGCTCTTGAGGT-CGGCCCAGTCCCAAAGGTCAGTA------GGC 416905 Query 109912 TCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTC 109971 | | | |||||| || |||||| | ||||| | | || || |||| | | Sbjct 416904 TTGACGTTCCACATGTCGTATTGAAGGATACCCTGGGAGACGGGCGAGCCCTCATAGGTG 416845 Query 109972 TCGTACGACCCCTCAACCTCGGCCAACTCGGATGA-AGCCTCTAGTGCCGCATGATACAT 110030 ||| | || || ||| || | || | |||| | || || || || || || || Sbjct 416844 GAGTAGGGGCCTTCCTCCTGAGCGAGCTTGCATGACATGGTC-AGGGCAGCGTGGTAGAT 416786 Query 110031 AGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCAC---AGTCGAAGGGAAGACC 110087 |||||||| || || || |||| | ||| | || ||||| | | Sbjct 416785 GGTCTCAAAGATCTGC---TTGTTGAGCTCCTTGGCCTCAGGCGACTCAAAGGGCATGCG 416729 Query 110088 ACAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCAT 110147 | || || |||| || | ||||| ||||| || |||||||| ||||| ||| Sbjct 416728 GAGAGCAAGGAAAGCATCAGCCAAGCCCTGGACACCAAGGCCAATGGGCCGATGGCGCAT 416669 Query 110148 GTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATT 110207 ||| | ||||| ||||||||| ||| |||||||| || ||||| || Sbjct 416668 GTTGCTGTTGCGAGCCTCGATGACGGGGTAATGGTTCACGTCGATGATCCTGTTGAGGTT 416609 Query 110208 CTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTT 110267 | | || || |||| | ||||| || | | | || || | | | Sbjct 416608 CCTGACGACGACCTGAGTGACCTGGTGGAGCTTCTTGAAGTCATACACGCCGTTGTTGTA 416549 Query 110268 ATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTC 110327 || || || ||| || || | ||| || || ||||| || | | ||| || | Sbjct 416548 ATCAACGTAGGCGGGCAGGGCCAGAGAGGCCAGGTTGCAGACGGCAACCTCATCGGGTGC 416489 Query 110328 GGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTG 110387 | ||| || | ||| || || |||| |||||| || |||| ||| | ||||||||| Sbjct 416488 CGAGTACTCGACAATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTG 416429 Query 110388 ATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTG 110447 || ||| |||||| |||||| ||||||||| | ||| | || || || ||||| Sbjct 416428 GTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTG 416369 Query 110448 TGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTT 110506 | || ||| | ||| | ||| | | || ||| | | || | ||| | |||| Sbjct 416368 AGCCTCGAGGACGGCGTACCAAAGCTTCTGCGCCTTGA-----TGGTCTTGCG-GCCCTT 416315 Query 110507 -----CCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAG 110561 ||| ||||||||| ||||||| ||||||| || | ||||| |||| ||| Sbjct 416314 GCCAGCCTTCTCGTACTTCTCGTACAAGGCCTCAAACTCGTCACCGTAGCAGTCAGCAAG 416255 Query 110562 ACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCAT 110621 || || || ||| || | ||| | ||| | || || ||| || | |||||| Sbjct 416254 GCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCAT 416195 Query 110622 GAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACC 110681 ||| || || || ||||||| ||| |||||| || || ||| | || || | || Sbjct 416194 GAAGAGATCGGGGATCCACAGGGCCAGGAAAAGATCGCGAGCGCGAACTTCCTCCTTGCC 416135 Query 110682 TTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGAC 110741 ||||| ||| || || | || || | || ||| | ||||||||| || || |||| Sbjct 416134 GTGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGAT 416075 Query 110742 ------AGCGATGGATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATT 110795 |||| || | ||| | | | | |||||| ||| ||||| || ||| || Sbjct 416074 GGCAAAAGCGCCGGGACGCTT--GTTGCCGC-CCTGGTCAACGTAGCGCGCCGTGTTGTT 416018 Query 110796 GAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGA 110855 |||||| | ||||| || | || || | || || || || || ||| || Sbjct 416017 GAAGACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGA 415958 Query 110856 CTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTG 110915 | ||||||| ||| |||| | || |||||||||||| ||| ||| || Sbjct 415957 GCCAGTGGCACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCAT 415898 Query 110916 TGCACA-CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTA 110974 ||||| ||| |||| || | || ||||| ||||| || |||| || ||| | Sbjct 415897 GGCACAGGTCT-TGAGGGTGTCGTAGATACCTTCAATGCTGTCATCCTTCATGTCAACCA 415839 Query 110975 GAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCAT 111034 | ||||| || |||| ||||| ||||||| || || |||||||| ||||| | || | Sbjct 415838 GGAAGCAGGACGACAGCTGAGCCTGAGGCGTGCCAGCGTTGAAGAGGGTAGGAGATGCGT 415779 Query 111035 GAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTC 111071 | ||| ||| ||| |||||| |||||| || || Sbjct 415778 GTGTGA--AGAATTTGCTGGACATGAGGTTGTACGTCTC 415742 Score = 125 bits (138), Expect = 8e-24 Identities = 245/357 (69%), Gaps = 14/357 (4%) Strand=Plus/Plus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGT---CGATGAT 109556 ||||| ||||||||||| |||||||| ||||||||| || ||||| | ||| | | Sbjct 446694 GTTCAAGGACTGAGACTGGTCGATGAAGGCACCACGATCGGCAGCCATCTGAACGACGGT 446753 Query 109557 ACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTC 109616 | || | ||| ||||||||||||||||||| |||||| || ||||||||| Sbjct 446754 GCGCT---GAGAAATCTCCCAGACAGTCTTGTACAGGGACTTGATGTCGGCGGGAATGTT 446810 Query 109617 CACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTC-GACC 109675 ||||| || || || ||| | | ||| | | |||||| || || |||| Sbjct 446811 GGGAATGTTCTGGATGGAACCATTTTCTGCAATGATGCGGTTCTTCATG-CTATCAGACC 446869 Query 109676 AGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTG---TTGACCACGACAAATTCAC 109732 | ||||| | | | || | ||| || || | ||||| || || || | Sbjct 446870 AAAGACCCA---TGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACGACCTGGAACTCGC 446926 Query 109733 CAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGC 109792 | || || || || |||||||||| | |||||| || ||||| ||||| ||||||| Sbjct 446927 CGGCGAGCACACGGCGCTGGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCGTTGTTGC 446986 Query 109793 CTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGA 109849 | ||||| || | || || ||||||||||| |||| |||||||||||| |||| Sbjct 446987 CAAGGATCTGCGAGGTACTGGCCGTGGGCATGGGCGCCACGAGAAGACTGTTACGGA 447043 >seq1558 Length=193658 Score = 159 bits (176), Expect = 4e-34 Identities = 346/507 (68%), Gaps = 23/507 (5%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 ||||||||||| || || || |||||| ||| |||| ||| | ||||| || || Sbjct 135119 CGATCGAAACGGCCAGGTCGTGTAAGAGCAGAATCGAGAACATCAGCTCGGTTCGTGCCG 135178 Query 11563 GCAATGACTACAATGCCAGTCTCAT---TGTCGAAACCGTCCATTTCTGTGAGAAGCTGG 11619 |||| || ||||| | | |||| ||| |||||||||||| || || || | |||| Sbjct 135179 GCAAGCACAACAAT--CTG-CTCAGAAGTGTTGAAACCGTCCATCTCCGTCAGGATCTGG 135235 Query 11620 TTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTCTT---- 11675 || | ||| || ||||| |||||| | ||| || ||||| ||| | Sbjct 135236 TTCAGTGTCGACTCGCGCTCGTCGTTGCCGCCCAT-CCGGTTGCCGT---CTTGTCGAGA 135291 Query 11676 ---ACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTG 11732 ||| | |||||||||||| || ||||| | ||| || || ||| || ||| Sbjct 135292 ACGACCAATAGCGTCAATCTCGTCAATGAAGATGATGCAGGGCGCGTTCTTGCGGGCCGA 135351 Query 11733 TTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG- 11791 | |||| || ||||| || ||| | || || || || |||||||| || || | | Sbjct 135352 TGCGAATAGGTCACGCACTCGCGAGGAACCGACGCCGACAAACATCTCCACAAACTCGGA 135411 Query 11792 -CGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGC-GATGGCTCGAGCGAGGAG 11849 | || || | ||||| ||| ||||| |||||| || || | || || | ||||| || Sbjct 135412 ACCGCTGA-CGCTGAA-GAAAGGAACCCCAGACTCGCCTGCCGTTGCCTTG-GCGAGCAG 135468 Query 11850 AGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACT 11909 |||||||||||||| || | |||| |||| ||| |||||||| ||||||||||| Sbjct 135469 CGTCTTACCCGTACCGGGGGGTCCAGACAGAATGGCACCACGGGGAATCTTGGCACCCAG 135528 Query 11910 TCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 | | | ||||||||| ||| |||||| |||| |||| || || ||||||| Sbjct 135529 GCGCTCGAACCGCTCAGGCGCCTTCAGGAAGCTGACAAACTCCATAATCTCAGCCTTGGC 135588 Query 11970 GGAGTCGATACCCTCAACATCGGTGAA 11996 ||| || || | |||||| |||| Sbjct 135589 CTCGTCCATGCCTGCCACATCGCTGAA 135615 >seq27938 Length=10276 Score = 122 bits (134), Expect = 1e-22 Identities = 410/634 (65%), Gaps = 21/634 (3%) Strand=Plus/Plus Query 110280 GGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAA 110339 ||| || || | ||| || || ||||| || | | ||| || | | ||| || | Sbjct 9599 GGGCAGGGCCAGAGAGGCCAGGTTGCAGACGGCAACCTCATCGGGTGCCGAGTACTCGAC 9658 Query 110340 AATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGA 110399 ||| || || |||| |||||| || |||| ||| | ||||||||| || ||| Sbjct 9659 AATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCTTGCG 9718 Query 110400 GTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAAT 110459 |||||| |||||| ||||||||| | ||| | || || || ||||| | || ||| | Sbjct 9719 GTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGAC 9778 Query 110460 GGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTT-----CCTCCTC 110513 ||| | ||| | | || ||| | | || | ||| | |||| ||| ||| Sbjct 9779 GGCGTACCAAAGCTTCTGCGCCTTGA-----TGGTCTTGCG-GCCCTTGCCAGCCTTCTC 9832 Query 110514 GTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTT 110573 |||||| ||||||| ||||||| || | ||||| |||| ||| || || Sbjct 9833 GTACTTCTCGTACAAGGCCTCAAACTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCACTC 9892 Query 110574 GTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGG 110633 || ||| || | ||| | ||| | || || ||| || | ||||||||| || || || Sbjct 9893 GTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCGGG 9952 Query 110634 AATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCG 110693 ||||||| ||| |||||| || || ||| | || || | || ||||| ||| Sbjct 9953 GATCCACAGGGCCAGGAAAAGATCGCGAGCGCGAACTTCCTCCTTGCCGTGGTTCTTGCG 10012 Query 110694 TAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGAC------AGCGAT 110747 || || | || || | || ||| | ||||||||| || || |||| |||| Sbjct 10013 GAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCGCC 10072 Query 110748 GGATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAG 110807 || | ||| | | | | |||||| ||| ||||| || ||| |||||||| | || Sbjct 10073 GGGACGCTT--GTTGCCGC-CCTGGTCAACGTAGCGCGCCGTGTTGTTGAAGACGCGAAG 10129 Query 110808 CATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACG 110867 ||| || | || || | || || || || || ||| || | ||||||| Sbjct 10130 CATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCAGTGGCACG 10189 Query 110868 AATGTCGTGGATATGCATACCAATACCACCCGCC 110901 ||| |||| | || |||||||||||| ||| Sbjct 10190 GATGCGATGGACGTTCAGACCAATACCACCAGCC 10223 >seq8958 Length=5440 Score = 100 bits (110), Expect = 3e-16 Identities = 182/260 (70%), Gaps = 6/260 (2%) Strand=Plus/Minus Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG--CGGCAG 11797 || ||||| || ||| | || || || || |||||||| || || | | | || | Sbjct 620 AGGTCACGCACTCGCGAGGAACCGACGCCGACAAACATCTCCACAAACTCGGAACCGCTG 561 Query 11798 AACACTGAATGAAGGGAACATTAGACTCACCAGC-GATGGCTCGAGCGAGGAGAGTCTTA 11856 | | ||||| ||| ||||| |||||| || || | || || | ||||| || |||||| Sbjct 560 A-CGCTGAA-GAAAGGAACCCCAGACTCGCCTGCCGTTGCCTTG-GCGAGCAGCGTCTTA 504 Query 11857 CCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAG 11916 |||||||| || | |||| |||| ||| |||||||| ||||||||||| | | Sbjct 503 CCCGTACCGGGGGGTCCAGACAGAATGGCACCACGGGGAATCTTGGCACCCAGGCGCTCG 444 Query 11917 TAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCG 11976 | ||||||||| ||| |||||| |||| |||| || || ||||||| ||| Sbjct 443 AACCGCTCAGGCGCCTTCAGGAAGCTGACAAACTCCATAATCTCAGCCTTGGCCTCGTCC 384 Query 11977 ATACCCTCAACATCGGTGAA 11996 || || | |||||| |||| Sbjct 383 ATGCCTGCCACATCGCTGAA 364 >seq11514 Length=5315 Score = 93.3 bits (102), Expect = 5e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 109751 GGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGG 109810 |||||||||| | |||||| || ||||| ||||| |||||||| ||||| || | || Sbjct 56 GGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCGTTGTTGCCAAGGATCTGCGAGGTAC 115 Query 109811 AAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGA 109849 || ||||||||||| |||| |||||||||||| |||| Sbjct 116 TGGCCGTGGGCATGGGCGCCACGAGAAGACTGTTACGGA 154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588769262061800