Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq24749 199 5e-46
seq1558 159 4e-34
seq27938 122 1e-22
seq8958 100 3e-16
seq11514 93.3 5e-14
>seq24749
Length=740841
Score = 199 bits (220), Expect = 5e-46
Identities = 1016/1599 (64%), Gaps = 57/1599 (4%)
Strand=Plus/Minus
Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGT---CGATGAT 109556
||||| ||||| ||||| |||||||| ||||||||| || ||||| | | | | |
Sbjct 417310 GTTCAAGGACTGGGACTGGTCGATGAAGGCACCACGATCGGCAGCCATCTGCACAACGGT 417251
Query 109557 ACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTC 109616
| || | ||| ||||||||||||||||||| ||||| || |||||||||
Sbjct 417250 GCGCT---GAGAAATCTCCCAGACAGTCTTGTACAGGGACTTGACGTCGGCGGGAATGTT 417194
Query 109617 CACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGA---GATCCTTCATCTCTTTC-G 109672
|||||| || || || |||| || | |||| ||| |||||| || || |
Sbjct 417193 GGGGATGTTCTGGATGGA---ACCATTCTCGGCAATGATGCGATTCTTCATG-CTATCAG 417138
Query 109673 ACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCAC 109732
|||| ||||| | | ||||| | | || |||||| || || || |
Sbjct 417137 ACCAAAGACCCATGTCAACAAGATCCTTGAGCAGCCAGGGGTTGACGACCTGGAACTCGC 417078
Query 109733 CAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGC 109792
| || || || || |||||||||| | |||||| || ||||| ||||| |||||||
Sbjct 417077 CGGCGAGCACACGGCGCTGGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCGTTGTTGC 417018
Query 109793 CTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGAC 109852
| ||||| || | || || ||||||||||| |||| |||||||||||| |||| |
Sbjct 417017 CAAGGATCTGCGAGGTACTGGCCGTGGGCATGGGCGCCACGAGAAGACTGTTACGGACGC 416958
Query 109853 CCTTCGTCTTTACCCG-CTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTC 109911
| | ||| | | | ||| | | || |||| || || | || || | |
Sbjct 416957 CATGTTGCTTGATCTGGCTCTTGAGGT-CGGCCCAGTCCCAAAGGTCAGTA------GGC 416905
Query 109912 TCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTC 109971
| | | |||||| || |||||| | ||||| | | || || |||| | |
Sbjct 416904 TTGACGTTCCACATGTCGTATTGAAGGATACCCTGGGAGACGGGCGAGCCCTCATAGGTG 416845
Query 109972 TCGTACGACCCCTCAACCTCGGCCAACTCGGATGA-AGCCTCTAGTGCCGCATGATACAT 110030
||| | || || ||| || | || | |||| | || || || || || || ||
Sbjct 416844 GAGTAGGGGCCTTCCTCCTGAGCGAGCTTGCATGACATGGTC-AGGGCAGCGTGGTAGAT 416786
Query 110031 AGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCAC---AGTCGAAGGGAAGACC 110087
|||||||| || || || |||| | ||| | || ||||| | |
Sbjct 416785 GGTCTCAAAGATCTGC---TTGTTGAGCTCCTTGGCCTCAGGCGACTCAAAGGGCATGCG 416729
Query 110088 ACAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCAT 110147
| || || |||| || | ||||| ||||| || |||||||| ||||| |||
Sbjct 416728 GAGAGCAAGGAAAGCATCAGCCAAGCCCTGGACACCAAGGCCAATGGGCCGATGGCGCAT 416669
Query 110148 GTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATT 110207
||| | ||||| ||||||||| ||| |||||||| || ||||| ||
Sbjct 416668 GTTGCTGTTGCGAGCCTCGATGACGGGGTAATGGTTCACGTCGATGATCCTGTTGAGGTT 416609
Query 110208 CTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTT 110267
| | || || |||| | ||||| || | | | || || | | |
Sbjct 416608 CCTGACGACGACCTGAGTGACCTGGTGGAGCTTCTTGAAGTCATACACGCCGTTGTTGTA 416549
Query 110268 ATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTC 110327
|| || || ||| || || | ||| || || ||||| || | | ||| || |
Sbjct 416548 ATCAACGTAGGCGGGCAGGGCCAGAGAGGCCAGGTTGCAGACGGCAACCTCATCGGGTGC 416489
Query 110328 GGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTG 110387
| ||| || | ||| || || |||| |||||| || |||| ||| | |||||||||
Sbjct 416488 CGAGTACTCGACAATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTG 416429
Query 110388 ATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTG 110447
|| ||| |||||| |||||| ||||||||| | ||| | || || || |||||
Sbjct 416428 GTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTG 416369
Query 110448 TGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTT 110506
| || ||| | ||| | ||| | | || ||| | | || | ||| | ||||
Sbjct 416368 AGCCTCGAGGACGGCGTACCAAAGCTTCTGCGCCTTGA-----TGGTCTTGCG-GCCCTT 416315
Query 110507 -----CCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAG 110561
||| ||||||||| ||||||| ||||||| || | ||||| |||| |||
Sbjct 416314 GCCAGCCTTCTCGTACTTCTCGTACAAGGCCTCAAACTCGTCACCGTAGCAGTCAGCAAG 416255
Query 110562 ACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCAT 110621
|| || || ||| || | ||| | ||| | || || ||| || | ||||||
Sbjct 416254 GCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCAT 416195
Query 110622 GAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACC 110681
||| || || || ||||||| ||| |||||| || || ||| | || || | ||
Sbjct 416194 GAAGAGATCGGGGATCCACAGGGCCAGGAAAAGATCGCGAGCGCGAACTTCCTCCTTGCC 416135
Query 110682 TTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGAC 110741
||||| ||| || || | || || | || ||| | ||||||||| || || ||||
Sbjct 416134 GTGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGAT 416075
Query 110742 ------AGCGATGGATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATT 110795
|||| || | ||| | | | | |||||| ||| ||||| || ||| ||
Sbjct 416074 GGCAAAAGCGCCGGGACGCTT--GTTGCCGC-CCTGGTCAACGTAGCGCGCCGTGTTGTT 416018
Query 110796 GAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGA 110855
|||||| | ||||| || | || || | || || || || || ||| ||
Sbjct 416017 GAAGACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGA 415958
Query 110856 CTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTG 110915
| ||||||| ||| |||| | || |||||||||||| ||| ||| ||
Sbjct 415957 GCCAGTGGCACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCAT 415898
Query 110916 TGCACA-CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTA 110974
||||| ||| |||| || | || ||||| ||||| || |||| || ||| |
Sbjct 415897 GGCACAGGTCT-TGAGGGTGTCGTAGATACCTTCAATGCTGTCATCCTTCATGTCAACCA 415839
Query 110975 GAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCAT 111034
| ||||| || |||| ||||| ||||||| || || |||||||| ||||| | || |
Sbjct 415838 GGAAGCAGGACGACAGCTGAGCCTGAGGCGTGCCAGCGTTGAAGAGGGTAGGAGATGCGT 415779
Query 111035 GAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTC 111071
| ||| ||| ||| |||||| |||||| || ||
Sbjct 415778 GTGTGA--AGAATTTGCTGGACATGAGGTTGTACGTCTC 415742
Score = 125 bits (138), Expect = 8e-24
Identities = 245/357 (69%), Gaps = 14/357 (4%)
Strand=Plus/Plus
Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGT---CGATGAT 109556
||||| ||||||||||| |||||||| ||||||||| || ||||| | ||| | |
Sbjct 446694 GTTCAAGGACTGAGACTGGTCGATGAAGGCACCACGATCGGCAGCCATCTGAACGACGGT 446753
Query 109557 ACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTC 109616
| || | ||| ||||||||||||||||||| |||||| || |||||||||
Sbjct 446754 GCGCT---GAGAAATCTCCCAGACAGTCTTGTACAGGGACTTGATGTCGGCGGGAATGTT 446810
Query 109617 CACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTC-GACC 109675
||||| || || || ||| | | ||| | | |||||| || || ||||
Sbjct 446811 GGGAATGTTCTGGATGGAACCATTTTCTGCAATGATGCGGTTCTTCATG-CTATCAGACC 446869
Query 109676 AGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTG---TTGACCACGACAAATTCAC 109732
| ||||| | | | || | ||| || || | ||||| || || || |
Sbjct 446870 AAAGACCCA---TGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACGACCTGGAACTCGC 446926
Query 109733 CAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGC 109792
| || || || || |||||||||| | |||||| || ||||| ||||| |||||||
Sbjct 446927 CGGCGAGCACACGGCGCTGGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCGTTGTTGC 446986
Query 109793 CTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGA 109849
| ||||| || | || || ||||||||||| |||| |||||||||||| ||||
Sbjct 446987 CAAGGATCTGCGAGGTACTGGCCGTGGGCATGGGCGCCACGAGAAGACTGTTACGGA 447043
>seq1558
Length=193658
Score = 159 bits (176), Expect = 4e-34
Identities = 346/507 (68%), Gaps = 23/507 (5%)
Strand=Plus/Plus
Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562
||||||||||| || || || |||||| ||| |||| ||| | ||||| || ||
Sbjct 135119 CGATCGAAACGGCCAGGTCGTGTAAGAGCAGAATCGAGAACATCAGCTCGGTTCGTGCCG 135178
Query 11563 GCAATGACTACAATGCCAGTCTCAT---TGTCGAAACCGTCCATTTCTGTGAGAAGCTGG 11619
|||| || ||||| | | |||| ||| |||||||||||| || || || | ||||
Sbjct 135179 GCAAGCACAACAAT--CTG-CTCAGAAGTGTTGAAACCGTCCATCTCCGTCAGGATCTGG 135235
Query 11620 TTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTCTT---- 11675
|| | ||| || ||||| |||||| | ||| || ||||| ||| |
Sbjct 135236 TTCAGTGTCGACTCGCGCTCGTCGTTGCCGCCCAT-CCGGTTGCCGT---CTTGTCGAGA 135291
Query 11676 ---ACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTG 11732
||| | |||||||||||| || ||||| | ||| || || ||| || |||
Sbjct 135292 ACGACCAATAGCGTCAATCTCGTCAATGAAGATGATGCAGGGCGCGTTCTTGCGGGCCGA 135351
Query 11733 TTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG- 11791
| |||| || ||||| || ||| | || || || || |||||||| || || | |
Sbjct 135352 TGCGAATAGGTCACGCACTCGCGAGGAACCGACGCCGACAAACATCTCCACAAACTCGGA 135411
Query 11792 -CGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGC-GATGGCTCGAGCGAGGAG 11849
| || || | ||||| ||| ||||| |||||| || || | || || | ||||| ||
Sbjct 135412 ACCGCTGA-CGCTGAA-GAAAGGAACCCCAGACTCGCCTGCCGTTGCCTTG-GCGAGCAG 135468
Query 11850 AGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACT 11909
|||||||||||||| || | |||| |||| ||| |||||||| |||||||||||
Sbjct 135469 CGTCTTACCCGTACCGGGGGGTCCAGACAGAATGGCACCACGGGGAATCTTGGCACCCAG 135528
Query 11910 TCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969
| | | ||||||||| ||| |||||| |||| |||| || || |||||||
Sbjct 135529 GCGCTCGAACCGCTCAGGCGCCTTCAGGAAGCTGACAAACTCCATAATCTCAGCCTTGGC 135588
Query 11970 GGAGTCGATACCCTCAACATCGGTGAA 11996
||| || || | |||||| ||||
Sbjct 135589 CTCGTCCATGCCTGCCACATCGCTGAA 135615
>seq27938
Length=10276
Score = 122 bits (134), Expect = 1e-22
Identities = 410/634 (65%), Gaps = 21/634 (3%)
Strand=Plus/Plus
Query 110280 GGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAA 110339
||| || || | ||| || || ||||| || | | ||| || | | ||| || |
Sbjct 9599 GGGCAGGGCCAGAGAGGCCAGGTTGCAGACGGCAACCTCATCGGGTGCCGAGTACTCGAC 9658
Query 110340 AATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGA 110399
||| || || |||| |||||| || |||| ||| | ||||||||| || |||
Sbjct 9659 AATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCTTGCG 9718
Query 110400 GTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAAT 110459
|||||| |||||| ||||||||| | ||| | || || || ||||| | || ||| |
Sbjct 9719 GTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGAC 9778
Query 110460 GGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTT-----CCTCCTC 110513
||| | ||| | | || ||| | | || | ||| | |||| ||| |||
Sbjct 9779 GGCGTACCAAAGCTTCTGCGCCTTGA-----TGGTCTTGCG-GCCCTTGCCAGCCTTCTC 9832
Query 110514 GTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTT 110573
|||||| ||||||| ||||||| || | ||||| |||| ||| || ||
Sbjct 9833 GTACTTCTCGTACAAGGCCTCAAACTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCACTC 9892
Query 110574 GTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGG 110633
|| ||| || | ||| | ||| | || || ||| || | ||||||||| || || ||
Sbjct 9893 GTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCGGG 9952
Query 110634 AATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCG 110693
||||||| ||| |||||| || || ||| | || || | || ||||| |||
Sbjct 9953 GATCCACAGGGCCAGGAAAAGATCGCGAGCGCGAACTTCCTCCTTGCCGTGGTTCTTGCG 10012
Query 110694 TAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGAC------AGCGAT 110747
|| || | || || | || ||| | ||||||||| || || |||| ||||
Sbjct 10013 GAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCGCC 10072
Query 110748 GGATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAG 110807
|| | ||| | | | | |||||| ||| ||||| || ||| |||||||| | ||
Sbjct 10073 GGGACGCTT--GTTGCCGC-CCTGGTCAACGTAGCGCGCCGTGTTGTTGAAGACGCGAAG 10129
Query 110808 CATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACG 110867
||| || | || || | || || || || || ||| || | |||||||
Sbjct 10130 CATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCAGTGGCACG 10189
Query 110868 AATGTCGTGGATATGCATACCAATACCACCCGCC 110901
||| |||| | || |||||||||||| |||
Sbjct 10190 GATGCGATGGACGTTCAGACCAATACCACCAGCC 10223
>seq8958
Length=5440
Score = 100 bits (110), Expect = 3e-16
Identities = 182/260 (70%), Gaps = 6/260 (2%)
Strand=Plus/Minus
Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG--CGGCAG 11797
|| ||||| || ||| | || || || || |||||||| || || | | | || |
Sbjct 620 AGGTCACGCACTCGCGAGGAACCGACGCCGACAAACATCTCCACAAACTCGGAACCGCTG 561
Query 11798 AACACTGAATGAAGGGAACATTAGACTCACCAGC-GATGGCTCGAGCGAGGAGAGTCTTA 11856
| | ||||| ||| ||||| |||||| || || | || || | ||||| || ||||||
Sbjct 560 A-CGCTGAA-GAAAGGAACCCCAGACTCGCCTGCCGTTGCCTTG-GCGAGCAGCGTCTTA 504
Query 11857 CCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAG 11916
|||||||| || | |||| |||| ||| |||||||| ||||||||||| | |
Sbjct 503 CCCGTACCGGGGGGTCCAGACAGAATGGCACCACGGGGAATCTTGGCACCCAGGCGCTCG 444
Query 11917 TAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCG 11976
| ||||||||| ||| |||||| |||| |||| || || ||||||| |||
Sbjct 443 AACCGCTCAGGCGCCTTCAGGAAGCTGACAAACTCCATAATCTCAGCCTTGGCCTCGTCC 384
Query 11977 ATACCCTCAACATCGGTGAA 11996
|| || | |||||| ||||
Sbjct 383 ATGCCTGCCACATCGCTGAA 364
>seq11514
Length=5315
Score = 93.3 bits (102), Expect = 5e-14
Identities = 80/99 (81%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 109751 GGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGG 109810
|||||||||| | |||||| || ||||| ||||| |||||||| ||||| || | ||
Sbjct 56 GGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCGTTGTTGCCAAGGATCTGCGAGGTAC 115
Query 109811 AAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGA 109849
|| ||||||||||| |||| |||||||||||| ||||
Sbjct 116 TGGCCGTGGGCATGGGCGCCACGAGAAGACTGTTACGGA 154
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588769262061800
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