Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq23972 167 5e-36
seq11113 154 3e-32
seq1002 125 2e-23
seq20756 113 1e-19
seq18668 84.2 5e-11
seq4446 84.2 5e-11
seq292 84.2 5e-11
>seq23972
Length=267833
Score = 167 bits (184), Expect = 5e-36
Identities = 163/210 (78%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| ||||||||||||||||| || ||||| ||||| |||| | ||| | ||||| ||
Sbjct 225276 AACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGACCATCCTC 225217
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|||||||| || |||||||| || || |||||||| |||||||| || || ||||| ||
Sbjct 225216 AAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTG 225157
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| || ||||||||| ||||||||||| ||| ||||| ||||| || | |||||
Sbjct 225156 AATCTTCGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGAGTGATGGTCTT 225097
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| |||| || || || || | |||||
Sbjct 225096 GCCGGTCAGCGTCTTGACAAAGATCTGCAT 225067
Score = 127 bits (140), Expect = 5e-24
Identities = 139/185 (75%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|||||||| || || ||||| || || || ||||| |||| || || | ||||| ||
Sbjct 225047 ACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCA 224988
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || ||||| || || || |||||||| ||||| ||||| || ||||| ||
Sbjct 224987 AGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGG 224928
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| ||||| || ||||||||||| || || |||||||| | |||||
Sbjct 224927 ATCTTCGACTTAACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTG 224868
Query 195112 CCTGT 195116
|| ||
Sbjct 224867 CCGGT 224863
Score = 105 bits (116), Expect = 1e-17
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| || || ||||| || || || ||||| || | || || | || || || ||||||
Sbjct 225497 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCAAGCTGC 225438
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || ||||| || || || ||||| || ||||||||||| || |||||||| || ||
Sbjct 225437 TTGCCAGCGAAAATCAGGCGCTGTTGATCGGGAGGAATGCCCTCCTTGTCTTGGATCTTG 225378
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
||| || || || || ||||| || ||| ||||| | || | ||||| || ||
Sbjct 225377 GACTTCACATTGTCGATCGTGTCGGATGATTCGACTTCCAATGTGATAGTCTTACCGGTG 225318
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
| || || ||||| | ||||||
Sbjct 225317 AGCGTCTTGACGAAGATTTGCAT 225295
>seq11113
Length=490148
Score = 154 bits (170), Expect = 3e-32
Identities = 160/210 (76%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| ||||||||||| ||||| || ||||| ||||| |||| ||||| | ||||| ||
Sbjct 77464 AACGAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCCTC 77523
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|||||||| || || ||||| || || |||||||| |||||||| || || ||||| ||
Sbjct 77524 AAGCTGCTTTCCAGCAAAGATGAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTG 77583
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| || ||||||||| || |||||||| ||| || || || || || | |||||
Sbjct 77584 AATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTT 77643
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| |||| ||| || || || | |||||
Sbjct 77644 GCCGGTCAGAGTCTTGACAAAGATCTGCAT 77673
Score = 118 bits (130), Expect = 2e-21
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| || || ||||| || || || ||||| || | || || | ||||| |||||||||
Sbjct 77243 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCCTCGAGCTGC 77302
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || ||||| || || || |||||||| ||||| || || || |||||||| || ||
Sbjct 77303 TTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCTTGGATCTTG 77362
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
||||||||| || || ||||| || ||| ||||| | || | ||||| || ||
Sbjct 77363 GACTTGACGTTGTCGATCGTGTCGGATGATTCGACTTCCAATGTGATAGTCTTACCGGTG 77422
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
| || || ||||| | ||||||
Sbjct 77423 AGTGTCTTGACGAAGATTTGCAT 77445
>seq1002
Length=198801
Score = 125 bits (138), Expect = 2e-23
Identities = 135/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012
|| || || ||||| |||| ||||| | ||||| ||||||||||| || ||||| ||
Sbjct 112547 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATC 112606
Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072
|| || |||||||| || || ||||| || ||||| || || || |||||| || |||
Sbjct 112607 AGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCA 112666
Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131
|||||||| || ||||| |||||||| | ||||| || |||| || || |||||
Sbjct 112667 ATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAA 112725
>seq20756
Length=5129
Score = 113 bits (124), Expect = 1e-19
Identities = 127/170 (75%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 194947 GACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCG 195006
||||| || || || ||||| |||| || || | ||||| || |||||||| || |||
Sbjct 4897 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCG 4956
Query 195007 AAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACG 195066
|| || || || |||||||| ||||| ||||| || ||||| || || || ||| |||
Sbjct 4957 AAAATCAGGCGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTAACG 5016
Query 195067 TTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
|| || ||||||||||| || || |||||||| | ||||| || ||
Sbjct 5017 TTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 5066
>seq18668
Length=73087
Score = 84.2 bits (92), Expect = 5e-11
Identities = 72/88 (82%), Gaps = 6/88 (7%)
Strand=Plus/Plus
Query 289736 CGAGGTCTCCAACTCTTCTGAATCTGAG---GAAGAGGAGAAGCCCAAGAAGAAGCCTG- 289791
|||| |||| |||||||||| |||||| || ||||||||||||||||||||| |||
Sbjct 26985 CGAGTCCTCCGACTCTTCTGACTCTGAGTCTGAGGAGGAGAAGCCCAAGAAGAAGGCTGC 27044
Query 289792 --TCGCCAAGAAGGCCCCTGTCAAGAAG 289817
|| |||||||||| ||| |||||||
Sbjct 27045 CAACGGCAAGAAGGCCGCTGCCAAGAAG 27072
>seq4446
Length=597168
Score = 84.2 bits (92), Expect = 5e-11
Identities = 72/88 (82%), Gaps = 6/88 (7%)
Strand=Plus/Minus
Query 289736 CGAGGTCTCCAACTCTTCTGAATCTGAG---GAAGAGGAGAAGCCCAAGAAGAAGCCTG- 289791
|||| |||| |||||||||| |||||| || ||||||||||||||||||||| |||
Sbjct 205756 CGAGTCCTCCGACTCTTCTGACTCTGAGTCTGAGGAGGAGAAGCCCAAGAAGAAGGCTGC 205697
Query 289792 --TCGCCAAGAAGGCCCCTGTCAAGAAG 289817
|| |||||||||| ||| |||||||
Sbjct 205696 CAACGGCAAGAAGGCCGCTGCCAAGAAG 205669
>seq292
Length=10237
Score = 84.2 bits (92), Expect = 5e-11
Identities = 72/88 (82%), Gaps = 6/88 (7%)
Strand=Plus/Plus
Query 289736 CGAGGTCTCCAACTCTTCTGAATCTGAG---GAAGAGGAGAAGCCCAAGAAGAAGCCTG- 289791
|||| |||| |||||||||| |||||| || ||||||||||||||||||||| |||
Sbjct 225 CGAGTCCTCCGACTCTTCTGACTCTGAGTCTGAGGAGGAGAAGCCCAAGAAGAAGGCTGC 284
Query 289792 --TCGCCAAGAAGGCCCCTGTCAAGAAG 289817
|| |||||||||| ||| |||||||
Sbjct 285 CAACGGCAAGAAGGCCGCTGCCAAGAAG 312
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109082422042127
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |