Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq23972 167 5e-36 seq11113 154 3e-32 seq1002 125 2e-23 seq20756 113 1e-19 seq18668 84.2 5e-11 seq4446 84.2 5e-11 seq292 84.2 5e-11 >seq23972 Length=267833 Score = 167 bits (184), Expect = 5e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||||||||||||||| || ||||| ||||| |||| | ||| | ||||| || Sbjct 225276 AACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGACCATCCTC 225217 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || |||||||| || || |||||||| |||||||| || || ||||| || Sbjct 225216 AAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTG 225157 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||||||||| ||||||||||| ||| ||||| ||||| || | ||||| Sbjct 225156 AATCTTCGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGAGTGATGGTCTT 225097 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || || || | ||||| Sbjct 225096 GCCGGTCAGCGTCTTGACAAAGATCTGCAT 225067 Score = 127 bits (140), Expect = 5e-24 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || ||||| || || || ||||| |||| || || | ||||| || Sbjct 225047 ACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCA 224988 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| || || || |||||||| ||||| ||||| || ||||| || Sbjct 224987 AGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGG 224928 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||| || ||||||||||| || || |||||||| | ||||| Sbjct 224927 ATCTTCGACTTAACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTG 224868 Query 195112 CCTGT 195116 || || Sbjct 224867 CCGGT 224863 Score = 105 bits (116), Expect = 1e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || ||||| || || || ||||| || | || || | || || || |||||| Sbjct 225497 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCAAGCTGC 225438 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || ||||| || || || ||||| || ||||||||||| || |||||||| || || Sbjct 225437 TTGCCAGCGAAAATCAGGCGCTGTTGATCGGGAGGAATGCCCTCCTTGTCTTGGATCTTG 225378 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || || || || ||||| || ||| ||||| | || | ||||| || || Sbjct 225377 GACTTCACATTGTCGATCGTGTCGGATGATTCGACTTCCAATGTGATAGTCTTACCGGTG 225318 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | |||||| Sbjct 225317 AGCGTCTTGACGAAGATTTGCAT 225295 >seq11113 Length=490148 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||||||||| ||||| || ||||| ||||| |||| ||||| | ||||| || Sbjct 77464 AACGAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCCTC 77523 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || || ||||| || || |||||||| |||||||| || || ||||| || Sbjct 77524 AAGCTGCTTTCCAGCAAAGATGAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTG 77583 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||||||||| || |||||||| ||| || || || || || | ||||| Sbjct 77584 AATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTT 77643 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| ||| || || || | ||||| Sbjct 77644 GCCGGTCAGAGTCTTGACAAAGATCTGCAT 77673 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || ||||| || || || ||||| || | || || | ||||| ||||||||| Sbjct 77243 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCCTCGAGCTGC 77302 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || ||||| || || || |||||||| ||||| || || || |||||||| || || Sbjct 77303 TTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCTTGGATCTTG 77362 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||||||| || || ||||| || ||| ||||| | || | ||||| || || Sbjct 77363 GACTTGACGTTGTCGATCGTGTCGGATGATTCGACTTCCAATGTGATAGTCTTACCGGTG 77422 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | |||||| Sbjct 77423 AGTGTCTTGACGAAGATTTGCAT 77445 >seq1002 Length=198801 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| |||| ||||| | ||||| ||||||||||| || ||||| || Sbjct 112547 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATC 112606 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || || |||||||| || || ||||| || ||||| || || || |||||| || ||| Sbjct 112607 AGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCA 112666 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 |||||||| || ||||| |||||||| | ||||| || |||| || || ||||| Sbjct 112667 ATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAA 112725 >seq20756 Length=5129 Score = 113 bits (124), Expect = 1e-19 Identities = 127/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 194947 GACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCG 195006 ||||| || || || ||||| |||| || || | ||||| || |||||||| || ||| Sbjct 4897 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCG 4956 Query 195007 AAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACG 195066 || || || || |||||||| ||||| ||||| || ||||| || || || ||| ||| Sbjct 4957 AAAATCAGGCGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTAACG 5016 Query 195067 TTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || ||||||||||| || || |||||||| | ||||| || || Sbjct 5017 TTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 5066 >seq18668 Length=73087 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/88 (82%), Gaps = 6/88 (7%) Strand=Plus/Plus Query 289736 CGAGGTCTCCAACTCTTCTGAATCTGAG---GAAGAGGAGAAGCCCAAGAAGAAGCCTG- 289791 |||| |||| |||||||||| |||||| || ||||||||||||||||||||| ||| Sbjct 26985 CGAGTCCTCCGACTCTTCTGACTCTGAGTCTGAGGAGGAGAAGCCCAAGAAGAAGGCTGC 27044 Query 289792 --TCGCCAAGAAGGCCCCTGTCAAGAAG 289817 || |||||||||| ||| ||||||| Sbjct 27045 CAACGGCAAGAAGGCCGCTGCCAAGAAG 27072 >seq4446 Length=597168 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/88 (82%), Gaps = 6/88 (7%) Strand=Plus/Minus Query 289736 CGAGGTCTCCAACTCTTCTGAATCTGAG---GAAGAGGAGAAGCCCAAGAAGAAGCCTG- 289791 |||| |||| |||||||||| |||||| || ||||||||||||||||||||| ||| Sbjct 205756 CGAGTCCTCCGACTCTTCTGACTCTGAGTCTGAGGAGGAGAAGCCCAAGAAGAAGGCTGC 205697 Query 289792 --TCGCCAAGAAGGCCCCTGTCAAGAAG 289817 || |||||||||| ||| ||||||| Sbjct 205696 CAACGGCAAGAAGGCCGCTGCCAAGAAG 205669 >seq292 Length=10237 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/88 (82%), Gaps = 6/88 (7%) Strand=Plus/Plus Query 289736 CGAGGTCTCCAACTCTTCTGAATCTGAG---GAAGAGGAGAAGCCCAAGAAGAAGCCTG- 289791 |||| |||| |||||||||| |||||| || ||||||||||||||||||||| ||| Sbjct 225 CGAGTCCTCCGACTCTTCTGACTCTGAGTCTGAGGAGGAGAAGCCCAAGAAGAAGGCTGC 284 Query 289792 --TCGCCAAGAAGGCCCCTGTCAAGAAG 289817 || |||||||||| ||| ||||||| Sbjct 285 CAACGGCAAGAAGGCCGCTGCCAAGAAG 312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109082422042127