Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq11113 107 1e-18
seq23972 93.3 3e-14
seq22587 84.2 1e-11
>seq11113
Length=490148
Score = 107 bits (118), Expect = 1e-18
Identities = 139/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||||||||| ||||| || || | || |||| || ||||| ||||| |||||
Sbjct 77483 TCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCCTCAAGCTGCTTTCCAGCAAAG 77542
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || || ||||| | || | ||||||||||| |||||| ||||||
Sbjct 77543 ATGAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTG 77602
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | || | |||||| |||| || ||||| || || || |||||||| |||
Sbjct 77603 TCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTGACA 77662
Query 34971 AAGATCTGCATA 34982
||||||||||||
Sbjct 77663 AAGATCTGCATA 77674
>seq23972
Length=267833
Score = 93.3 bits (102), Expect = 3e-14
Identities = 147/211 (70%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||| | ||||| ||| || ||||||||||| ||||| || | | || |||| ||
Sbjct 225276 AACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGACCATCCTC 225217
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
||||| ||||| || || || || || || ||||| | || | |||||||||||
Sbjct 225216 AAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTG 225157
Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951
||||||| |||||| | || | || | ||| || || | || ||||| ||
Sbjct 225156 AATCTTCGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGAGTGATGGTCTT 225097
Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| || || ||||| |||||||||||||||
Sbjct 225096 GCCGGTCAGCGTCTTGACAAAGATCTGCATA 225066
>seq22587
Length=423
Score = 84.2 bits (92), Expect = 1e-11
Identities = 137/195 (70%), Gaps = 8/195 (4%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| ||||| | || |||| || ||||| || || |||||
Sbjct 276 TCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAA 217
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || || ||||| | || | ||||||||||| ||||| ||||| ||
Sbjct 216 ATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT 159
Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966
| ||||| || | ||| || || | ||| || || || |||||||| |||||
Sbjct 158 --TGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTT 101
Query 34967 CACAAAGATCTGCAT 34981
|| |||||||||||
Sbjct 100 GACGAAGATCTGCAT 86
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324522498309768
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |