Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq23861 113 4e-20
>seq23861
Length=270256
Score = 113 bits (124), Expect = 4e-20
Identities = 425/669 (64%), Gaps = 62/669 (9%)
Strand=Plus/Plus
Query 29775 TCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGC 29834
||||||||||| ||||||||| |||| ||||| || ||||| || ||||||||||| ||
Sbjct 129368 TCTGGGCTCCCGCTCGAGCTGTGTCTCCAGCGCATCGACGTGGTCGAGGTAGACGTGCGC 129427
Query 29835 GTCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGT 29893
|| |||| | || | || ||| || || | || || | | || |||||||
Sbjct 129428 ATCGCCCATGACATGCGTCAGGCTC-CCAGGGACCAGATCGCATGCACGCGCAATCATGT 129486
Query 29894 ACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACC 29953
||| || || | |||||| || || || || || || ||||| |||||||| | ||||
Sbjct 129487 GCGTCAGCAGCGCGTAGCTCGCAATATTGAACGGCACGCCGAGACCCATGTCACATGACC 129546
Query 29954 TCTGGTAGAGCTGACA------------CGAGAGCT----CTC--CGTC----------- 29984
||||||||||| || | | ||| ||| ||||
Sbjct 129547 GTTGGTAGAGCTGGCAGTGCAGGTGGCCCTTGGGCTTCTCCTCGGCGTCCTCGGCCGCGG 129606
Query 29985 -----GCTC--------------------ACGTAAAACTGACACATGGTGTGGCACGGAG 30019
|||| |||||||||||| | ||||||| || |
Sbjct 129607 CATTGGCTCTCCTGGCCCGCGGGTAGGAGACGTAAAACTGAGCAAACATGTGGCAGGGCG 129666
Query 30020 GAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTT 30079
| || ||||| || || |||||||| |||| | ||||||||||| || |
Sbjct 129667 GCAGCGCCATCTTCTTCAGGTGCGCCGGGTTCCATGCGCTGAGGATGATGCGCCGATCGT 129726
Query 30080 CTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGT 30139
|| ||| || ||| || || | | |||||| || || || |||| ||
Sbjct 129727 ACGGATTGGTCTTGAGCTTGTGGACAATCTCTGCCAGCTGGTCGACACCTTGTCCCGTGT 129786
Query 30140 AGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCG 30199
|||| | | || || ||||| || ||||| |||| ||| ||||| ||||| || |
Sbjct 129787 AGTCCGTCGTCGCATCAACATACTCAGCACCGAAGTGCCGCCATTGGAAGCCGTAGACGG 129846
Query 30200 GTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAAC 30259
| || ||||| || |||| | ||| || ||| |||| | || || | || |
Sbjct 129847 GACCGAGGTCGCCTACTTCGCGGTGTGAGAGTCCCACGCTGTCGAGGAACTCGCGCGAGC 129906
Query 30260 CGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTG-GACCCT 30318
||||| ||||||||||||| | ||| |||| ||| | |||| ||| ||||
Sbjct 129907 CGTTGCCGTCCCAGATCTTGATGCCCGCCTCGCTCAGCGGTATGGACGACGTGCTGCCCT 129966
Query 30319 CTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGA 30376
| |||||||||| ||||| | |||||||| | || ||||| | ||| ||||| |
Sbjct 129967 GT-ACGAACCACAAAAGCTCGGCGACGACGGC--GCGAAGGAAGACGCGCTTTGTCGTCA 130023
Query 30377 GGAGGGGAA 30385
| |||||||
Sbjct 130024 GCAGGGGAA 130032
Score = 105 bits (116), Expect = 5e-18
Identities = 232/343 (68%), Gaps = 6/343 (2%)
Strand=Plus/Plus
Query 30046 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 30105
|||||||| |||| | ||||||||||| || | || ||| || ||| || ||
Sbjct 163414 GGGTTCCATGCGCTGAGGATGATGCGCCGATCGTACGGATTGGTCTTGAGCTTGTGGACA 163473
Query 30106 GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCT 30165
| | |||||| || || || |||| |||||| | | || || ||||||
Sbjct 163474 ATCTCTGCCAGCTGGTCGACACCTTGACCCGTGTAGTCCGTCTTCGCATCAACGTACTCG 163533
Query 30166 GCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC 30225
|| ||||| |||| ||| ||||| ||||| || || || ||||| || |||| | |||
Sbjct 163534 GCACCGAAGTGCCGCCATTGGAAGCCGTAGACGGGACCGAGGTCGCCTACTTCGCGGTGT 163593
Query 30226 TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCC 30285
|| ||| |||| | || || | || |||||| ||||||||||||| | |||
Sbjct 163594 GAGAGTCCCACGCTGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGATGCCC 163653
Query 30286 TTCTCGGAGAGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCAC 30344
|||| ||| | |||| ||| |||| | || |||||||| ||||| | ||
Sbjct 163654 GCCTCGCTCAGCGGTATGGATGACGTGCTGCCCTGT-ACAAACCACAGAAGCTCGGCGAC 163712
Query 30345 GACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGGAA 30385
|||||| | || ||||| | ||| ||||| || |||||||
Sbjct 163713 GACGGC--GCGAAGGAAGACGCGCTTCGTCGTCAGCAGGGGAA 163753
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408477755861813
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |