Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq23861 113 4e-20 >seq23861 Length=270256 Score = 113 bits (124), Expect = 4e-20 Identities = 425/669 (64%), Gaps = 62/669 (9%) Strand=Plus/Plus Query 29775 TCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGC 29834 ||||||||||| ||||||||| |||| ||||| || ||||| || ||||||||||| || Sbjct 129368 TCTGGGCTCCCGCTCGAGCTGTGTCTCCAGCGCATCGACGTGGTCGAGGTAGACGTGCGC 129427 Query 29835 GTCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGT 29893 || |||| | || | || ||| || || | || || | | || ||||||| Sbjct 129428 ATCGCCCATGACATGCGTCAGGCTC-CCAGGGACCAGATCGCATGCACGCGCAATCATGT 129486 Query 29894 ACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACC 29953 ||| || || | |||||| || || || || || || ||||| |||||||| | |||| Sbjct 129487 GCGTCAGCAGCGCGTAGCTCGCAATATTGAACGGCACGCCGAGACCCATGTCACATGACC 129546 Query 29954 TCTGGTAGAGCTGACA------------CGAGAGCT----CTC--CGTC----------- 29984 ||||||||||| || | | ||| ||| |||| Sbjct 129547 GTTGGTAGAGCTGGCAGTGCAGGTGGCCCTTGGGCTTCTCCTCGGCGTCCTCGGCCGCGG 129606 Query 29985 -----GCTC--------------------ACGTAAAACTGACACATGGTGTGGCACGGAG 30019 |||| |||||||||||| | ||||||| || | Sbjct 129607 CATTGGCTCTCCTGGCCCGCGGGTAGGAGACGTAAAACTGAGCAAACATGTGGCAGGGCG 129666 Query 30020 GAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTT 30079 | || ||||| || || |||||||| |||| | ||||||||||| || | Sbjct 129667 GCAGCGCCATCTTCTTCAGGTGCGCCGGGTTCCATGCGCTGAGGATGATGCGCCGATCGT 129726 Query 30080 CTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGT 30139 || ||| || ||| || || | | |||||| || || || |||| || Sbjct 129727 ACGGATTGGTCTTGAGCTTGTGGACAATCTCTGCCAGCTGGTCGACACCTTGTCCCGTGT 129786 Query 30140 AGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCG 30199 |||| | | || || ||||| || ||||| |||| ||| ||||| ||||| || | Sbjct 129787 AGTCCGTCGTCGCATCAACATACTCAGCACCGAAGTGCCGCCATTGGAAGCCGTAGACGG 129846 Query 30200 GTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAAC 30259 | || ||||| || |||| | ||| || ||| |||| | || || | || | Sbjct 129847 GACCGAGGTCGCCTACTTCGCGGTGTGAGAGTCCCACGCTGTCGAGGAACTCGCGCGAGC 129906 Query 30260 CGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTG-GACCCT 30318 ||||| ||||||||||||| | ||| |||| ||| | |||| ||| |||| Sbjct 129907 CGTTGCCGTCCCAGATCTTGATGCCCGCCTCGCTCAGCGGTATGGACGACGTGCTGCCCT 129966 Query 30319 CTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGA 30376 | |||||||||| ||||| | |||||||| | || ||||| | ||| ||||| | Sbjct 129967 GT-ACGAACCACAAAAGCTCGGCGACGACGGC--GCGAAGGAAGACGCGCTTTGTCGTCA 130023 Query 30377 GGAGGGGAA 30385 | ||||||| Sbjct 130024 GCAGGGGAA 130032 Score = 105 bits (116), Expect = 5e-18 Identities = 232/343 (68%), Gaps = 6/343 (2%) Strand=Plus/Plus Query 30046 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 30105 |||||||| |||| | ||||||||||| || | || ||| || ||| || || Sbjct 163414 GGGTTCCATGCGCTGAGGATGATGCGCCGATCGTACGGATTGGTCTTGAGCTTGTGGACA 163473 Query 30106 GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCT 30165 | | |||||| || || || |||| |||||| | | || || |||||| Sbjct 163474 ATCTCTGCCAGCTGGTCGACACCTTGACCCGTGTAGTCCGTCTTCGCATCAACGTACTCG 163533 Query 30166 GCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC 30225 || ||||| |||| ||| ||||| ||||| || || || ||||| || |||| | ||| Sbjct 163534 GCACCGAAGTGCCGCCATTGGAAGCCGTAGACGGGACCGAGGTCGCCTACTTCGCGGTGT 163593 Query 30226 TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCC 30285 || ||| |||| | || || | || |||||| ||||||||||||| | ||| Sbjct 163594 GAGAGTCCCACGCTGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGATGCCC 163653 Query 30286 TTCTCGGAGAGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCAC 30344 |||| ||| | |||| ||| |||| | || |||||||| ||||| | || Sbjct 163654 GCCTCGCTCAGCGGTATGGATGACGTGCTGCCCTGT-ACAAACCACAGAAGCTCGGCGAC 163712 Query 30345 GACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGGAA 30385 |||||| | || ||||| | ||| ||||| || ||||||| Sbjct 163713 GACGGC--GCGAAGGAAGACGCGCTTCGTCGTCAGCAGGGGAA 163753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408477755861813