Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq22587 87.8 1e-12
seq11113 86.0 5e-12
seq10668 86.0 5e-12
seq23972 84.2 2e-11
seq26527 82.4 6e-11
>seq22587
Length=423
Score = 87.8 bits (96), Expect = 1e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623
|| || ||| ||| || || || ||||| || || ||| | || | || || | ||||
Sbjct 288 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCAAGCTGC 229
Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683
|| || ||||| ||||| |||||||| || | ||| | |||||||||||| |||||
Sbjct 228 TTGCCAGCAAAAATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTG 169
Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743
|| ||| | | | || |||| ||||||||| | || || || || |||||
Sbjct 168 GACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTG 109
Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766
| || || || || ||||||||
Sbjct 108 AGGGTCTTGACGAAGATCTGCAT 86
>seq11113
Length=490148
Score = 86.0 bits (94), Expect = 5e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
||| || ||||| ||||| || || ||| | ||| | || || | |||||| || |||||
Sbjct 77482 CTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCCTCAAGCTGCTTTCCAGCAAA 77541
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
|| || |||||||| || | |||| ||||||||||| |||||| || ||
Sbjct 77542 GATGAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTT 77601
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | | || || | ||| ||||| | || || || || || |||| ||| || ||
Sbjct 77602 GTCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTGAC 77661
Query 48755 AAAAATCTGCAT 48766
||| ||||||||
Sbjct 77662 AAAGATCTGCAT 77673
>seq10668
Length=117041
Score = 86.0 bits (94), Expect = 5e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 9106 TCCCCCTTATTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTA 9165
|| |||| | ||| ||||||| ||||||| || |||||||||| | || |
Sbjct 94019 TCACCCTCAGCCACCGCAAAGTCGGTGTCGGCGTGGTTGAACAGCAGGATCTTGACCTGG 93960
Query 9166 CCCCTGTAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGT 9225
|| | ||| || |||| || || ||||| ||| |||||||||||||||| || ||
Sbjct 93959 CCGCGGTAGTCGGCATCAATGACGCCAGCGCCCGTGTCGATGAAGTGCTTGGAGGCGAGG 93900
Query 9226 CCAGAGCGGGGCGCGATTCGACCGT 9250
||||||||||| ||||| || ||||
Sbjct 93899 CCAGAGCGGGGGGCGATGCGGCCGT 93875
>seq23972
Length=267833
Score = 84.2 bits (92), Expect = 2e-11
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
|||||||| || || ||| || || || ||||| ||||| || | || |||| ||
Sbjct 225503 ACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCA 225444
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673
| |||||| || || || ||||| ||||||||||| | |||| ||||||||||||
Sbjct 225443 AGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGATCGGGAGGAATGCCCTCCTTGTC 225388
>seq26527
Length=223112
Score = 82.4 bits (90), Expect = 6e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623
|| || ||| ||| || || || ||||| || || ||| | || | || || | ||||
Sbjct 222601 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCAAGCTGC 222660
Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683
|| || || || ||||| |||||||| || | ||| | |||||||||||| |||||
Sbjct 222661 TTGCCAGCGAAGATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTG 222720
Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743
|| ||| | | | || |||| ||||||||| | || || || || |||||
Sbjct 222721 GACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTG 222780
Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766
| || || || || ||||||||
Sbjct 222781 AGGGTCTTGACGAAGATCTGCAT 222803
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380807228987163
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |