Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq23972 102 5e-16
seq11113 91.5 1e-12
>seq23972
Length=267833
Score = 102 bits (112), Expect = 5e-16
Identities = 116/153 (76%), Gaps = 2/153 (1%)
Strand=Plus/Minus
Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677
|| ||||| ||||| ||||| ||||| || || |||||||| |||||||| || ||||||
Sbjct 225449 TCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGATCGGGAGGAATGCCCTCCTTG 225390
Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736
||||| ||||| || ||| || || || || | || | | || ||| || ||
Sbjct 225389 TCTTGGATCTTGGACTTCACATTGTCGATCGTGTCGGATGATTCGACTTCCAA-TGTGAT 225331
Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||| ||||||||||| ||||| ||||| |||||
Sbjct 225330 AGTCTTACCGGTGAGCGTCTTGACGAAGATTTG 225298
>seq11113
Length=490148
Score = 91.5 bits (100), Expect = 1e-12
Identities = 114/154 (74%), Gaps = 2/154 (1%)
Strand=Plus/Plus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
||| || || ||||| ||||| ||||| || || ||||| || ||||| || || |||||
Sbjct 77290 ATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGGATACCCTCCTT 77349
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735
|||||| ||||| ||||| || || || || | || | | || ||| || |
Sbjct 77350 GTCTTGGATCTTGGACTTGACGTTGTCGATCGTGTCGGATGATTCGACTTCCAA-TGTGA 77408
Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|||| ||||||||||| ||||| ||||| |||||
Sbjct 77409 TAGTCTTACCGGTGAGTGTCTTGACGAAGATTTG 77442
Score = 87.8 bits (96), Expect = 1e-11
Identities = 153/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
|||||| ||||| || || ||||| || || || || || || || | |||||
Sbjct 77452 ACGAAGGCGGAGAACGAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGT 77511
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| ||| ||||| |||||||||||||| || || || ||||| || |||||||| ||
Sbjct 77512 ACGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGGCGCTGTTGGTCGGGAGGAATACC 77571
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
|||||||| |||||||| ||||| || || || || | | | || || |
Sbjct 77572 CTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCAA-CCTCGA 77630
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| || || || || ||||| |||||||| || || || ||
Sbjct 77631 GAGTGATGGTCTTGCCGGTCAGAGTCTTGACAAAGATCTG 77670
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3266974669660988
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |