Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq24749 206 3e-48
seq27938 127 2e-24
seq18890 104 3e-17
seq28027 82.4 9e-11
>seq24749
Length=740841
Score = 206 bits (228), Expect = 3e-48
Identities = 937/1465 (64%), Gaps = 39/1465 (3%)
Strand=Plus/Plus
Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT--TCAACGGCTCGATGGCATCCTCA 75203
|||||||| |||| ||||| ||| |||||| |||| ||| || |||| |
Sbjct 415613 TACTTTGGCTTCAAGACCCTGGAGCGTTCCTATCTCCTCAA--GCTTGACGGCAAGATTG 415670
Query 75204 TGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTG 75263
|| ||| ||| ||||| | ||||| || | |||| ||| || || || |||
Sbjct 415671 CCGAGCGCCCGCAGCACATGATTATGCGTGTTTCCGTCGGTATCTGGGGAGACAACGTTG 415730
Query 75264 ATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTA--TGTTCATTCACGCAACACC 75321
| |||| | ||||| ||| || |||||| || | | |||| |||||| | ||
Sbjct 415731 AGCGTGTCATTGAGACGTACAACCTCATGTCC--AGCAAATTCTTCACACACGCATCTCC 415788
Query 75322 AACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAA 75381
||||||||||| ||||| || || | ||| |||| |||||||| | | ||
Sbjct 415789 TACCCTCTTCAACGCTGGCACGCCTCAGGCTCAGCTGTCGTCCTGCTTCCTGGTTGACAT 415848
Query 75382 CAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAA 75441
||||| ||| || | |||||||| | || || | | ||||| ||||| ||
Sbjct 415849 GAAGGATGACAGCATTGAAGGTATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAA 415908
Query 75442 GTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCG 75501
| |||||| |||||||| || || ||||| | | |||| | ||| |||
Sbjct 415909 GATGGCTGGTGGTATTGGTCTGAACGTCCATCGCATCCGTGCCACTGGCTCTTACATTGC 415968
Query 75502 GGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGC 75561
|| || || || ||| | || || | || ||||||||||| || ||| ||| ||
Sbjct 415969 CGGCACCAACGGCACTTCAAACGGCATCACGCCCATGCTTCGCGTCTTCAACAACACGGC 416028
Query 75562 GCGCTATGTAAATCA-AGCGG-----GGCGTCGCAAGGGGTCCATCGCGGTCTACTTGGA 75615
|||||| || | || |||| ||||| | || | | || ||||| | ||
Sbjct 416029 GCGCTACGTTGACCAGGGCGGCAACAAGCGTCCC---GGCGCTTTTGCCATCTACCTTGA 416085
Query 75616 ACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGA 75675
|||||||| || ||| || | ||||||||||| | || ||||| || | || ||
Sbjct 416086 GCCATGGCACGCTGATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGA 416145
Query 75676 GGCTCGGTGTAGAGATCTCTTTTCAT--CCCTGTGGATTCCAGACCTTTTCATGAAGCGG 75733
| ||| | | || ||||||| | |||||||||| || || || |||||||||||
Sbjct 416146 AGTTCGCGCTCGCGA--TCTTTTCCTGGCCCTGTGGATCCCCGATCTCTTCATGAAGCGT 416203
Query 75734 GTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC 75793
|| ||| || || | ||| |||| | || || || || || || || | |||
Sbjct 416204 GTCGAGAAGAACGGCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGAC 416263
Query 75794 GCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG-AGGGTAGAGC--C 75850
||||| |||||||| ||| | ||| ||||| || ||| || || || |
Sbjct 416264 TGCTACGGTGACGAGTTTGAGGCCTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCCGC 416323
Query 75851 AATGCGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGAC 75909
|| ||| | | || ||| || | ||||| | || | ||| | | ||||| |||||
Sbjct 416324 AA---GACCAT-CAAGGCGCAGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGAC 416379
Query 75910 TGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTT 75969
|| | || | ||||| ||||||||| || ||| ||||| ||||| ||||| |
Sbjct 416380 CGGCAACCCCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCT 416439
Query 75970 GGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGA 76029
|| || || ||||| || || ||||| || ||| | |||||| | | |||||
Sbjct 416440 TGGTACCATTCGCAGCTCCAACCTGTGCACAGAGATTGTCGAGTACTCGGCACCCGATGA 416499
Query 76030 GACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCG 76089
| || || ||||| |||| || | ||||| || || || || | | | |
Sbjct 416500 GGTTGCCGTCTGCAACCTGGCCTCTCTGGCCCTGCCCGCCTACGTTGATTACAACAACGG 416559
Query 76090 CACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCG 76149
| | ||| | | || || || | |||| || | || || || || ||| |
Sbjct 416560 CGTGTATGACTTCAAGAAGCTCCACCAGGTCACTCAGGTCGTCGTCAGGAACCTCAACAG 416619
Query 76150 AGTCATTGACAGAAATTTTTATCCCG---TTGAGACTGCGCGAAAGTCTAATATGCGACA 76206
|||| ||| || ||| |||| | ||| || ||| | || || ||||| ||
Sbjct 416620 GATCATCGACGTGAACCATTACCCCGTCATCGAGGCT-CGCAACAG--CAACATGCGCCA 416676
Query 76207 CAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGC 76266
| || ||||| | ||||| || || | || |||| || || |||| |
Sbjct 416677 TCGGCCCATTGGCCTTGGTGTCCAGGGCTTGGCTGATGCTTTCCTTGCTCTCCGCATGCC 416736
Query 76267 ATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGC 76326
||||| || ||| ||||||||| | || | |||||||| ||||| || |||||
Sbjct 416737 CTTTGAGTCGCCTGAGGCCAAGGAGCTCAACAAGCAGATCTTTGAGACCATCTACCACGC 416796
Query 76327 ATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGG 76386
||||| | || | | ||| | | |||| |||| || | ||||||
Sbjct 416797 TGCCCTGACCATGTCATGCAAGCTCGCTCAGGAGGAAGGCCCCTACTCCACCTATGAGGG 416856
Query 76387 TTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAA 76446
|| |||| ||||| || | ||||| | || |||| |||| || || || | || |
Sbjct 416857 CTCGCCCGTCTCCCAGGGTATCCTTCAATACGACATGT-GGAACGTCAAGCCTA-CTGAC 416914
Query 76447 C--TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTT 76504
| | ||||||| | |||||| | |||||| | | || | ||||||||||||
Sbjct 416915 CTTTGGGACTGGGCCGACCTCAAGAGCCAGATCAAGCAACATGGCGTCCGTAACAGTCTT 416974
Query 76505 TTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTT 76564
| |||| || ||||| || ||| ||| | || ||| | || || || || |||||
Sbjct 416975 CTCGTGGCGCCCATGCCCACGGCCAGTACCTCGCAGATCCTTGGCAACAACGAGTGCTTC 417034
Query 76565 GAACCATACACAACAAACATCTACC 76589
|| || ||||| | ||||||||||
Sbjct 417035 GAGCCTTACACGTCCAACATCTACC 417059
>seq27938
Length=10276
Score = 127 bits (140), Expect = 2e-24
Identities = 440/677 (65%), Gaps = 21/677 (3%)
Strand=Plus/Minus
Query 75401 GGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGG 75460
|||||||| | || || | | ||||| ||||| ||| |||||| ||||||||
Sbjct 10267 GGTATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATTGGT 10208
Query 75461 ATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCA 75520
|| || ||||| | | |||| | ||| ||| || || || || |||
Sbjct 10207 CTGAACGTCCATCGCATCCGTGCCACTGGCTCTTACATTGCCGGCACCAACGGCACTTCA 10148
Query 75521 GATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCA-AGC 75579
| || || | || ||||||||||| || ||| ||| |||||||| || | || ||
Sbjct 10147 AACGGCATCACGCCCATGCTTCGCGTCTTCAACAACACGGCGCGCTACGTTGACCAGGGC 10088
Query 75580 GG-----GGCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGATATC 75634
|| ||||| | || | | || ||||| | || |||||||| || ||| ||
Sbjct 10087 GGCAACAAGCGTCCC---GGCGCTTTTGCCATCTACCTTGAGCCATGGCACGCTGATGTC 10031
Query 75635 ATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTC 75694
| ||||||||||| | || ||||| || | || || | ||| | | || ||
Sbjct 10030 TTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAAGTTCGCGCTCGCGA--TC 9973
Query 75695 TTTTCAT--CCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAAT 75752
||||| | |||||||||| || || || ||||||||||| || ||| || || | |
Sbjct 9972 TTTTCCTGGCCCTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAGAAGAACGGCGACT 9913
Query 75753 GGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTG 75812
|| |||| | || || || || || || || | ||| ||||| |||||||
Sbjct 9912 GGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTACGGTGACGAGTTTG 9853
Query 75813 AAGCCCTCTACACAAAGTATGAAGAGG-AGGGTAGAGC--CAATGCGACTGTACCAGCCG 75869
| ||| | ||| ||||| || ||| || || || ||| ||| | | || ||
Sbjct 9852 AGGCCTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCCGCAA---GACCAT-CAAGGCG 9797
Query 75870 CCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTT 75928
| || | ||||| | || | ||| | | ||||| ||||| || | || | |||||
Sbjct 9796 CAGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGCTC 9737
Query 75929 TACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCA 75988
||||||||| || ||| ||||| ||||| ||||| | || || || |||||
Sbjct 9736 TACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGTACCATTCGCAGCTCC 9677
Query 75989 AATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTG 76048
|| || ||||| || ||| | |||||| | | |||||| || || ||||| ||
Sbjct 9676 AACCTGTGCACAGAGATTGTCGAGTACTCGGCACCCGATGAGGTTGCCGTCTGCAACCTG 9617
Query 76049 GCATCAATCGCCCTTCC 76065
|| || | ||||| ||
Sbjct 9616 GCCTCTCTGGCCCTGCC 9600
>seq18890
Length=446397
Score = 104 bits (114), Expect = 3e-17
Identities = 332/513 (65%), Gaps = 18/513 (4%)
Strand=Plus/Minus
Query 65004 AACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTT---GACACAAA 65060
||| || || || ||| |||||||| | ||||| ||| |||| | || | ||
Sbjct 160568 AACAGTTCCCTGCATTCGCAAGAAGGCTGACTGGGCCTTGACATGGATCACCGATAAGAA 160509
Query 65061 GTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTC 65120
|||| |||| ||| ||||| | || || ||| || |||||||||||||||
Sbjct 160508 GTCTA---CCTTTGCCACCCGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAG 160452
Query 65121 CGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTT 65180
||| | ||| | | || | ||| | |||||||| || |||||||| ||||| ||
Sbjct 160451 CGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTT 160392
Query 65181 CTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTT 65240
||| || || || || || || || |||||||| ||| || || || ||| ||
Sbjct 160391 CTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACCGACTTCGCTTGTCTGCTGTT 160332
Query 65241 CAAGACTTTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGT 65300
| ||| || | |||| | | ||| |||| | ||| || | || || ||
Sbjct 160331 CTCTCACTTGAACAACCGCCCCAGCAAGCAGACTGTCCAAGACATTGTCACCGATGCTGT 160272
Query 65301 TGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTC 65360
| |||||| ||| |||| | || || ||||| ||| || |||| |||||| |
Sbjct 160271 CAATATTGAGCAAGAGTTCCTGACTGAGGCTCTCCCCTGTGGCCTGCTCGGCATGAACGC 160212
Query 65361 TGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGT 65420
| ||| |||||||||||| || | || || |||||| || | |
Sbjct 160211 TACTCTCATGAAGCAGTACATTGAGTTCGTTGCAGACCGCCTCCTC------GTCGCCCT 160158
Query 65421 -GCCACCCA-----TTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCT 65474
| || | | ||| || || | || ||||| ||||| ||||| |||||| ||
Sbjct 160157 CGGCAACGAGAAGGTTTACAAGGCTACCAACCCATTCGACTTCATGGAGAACATTTCTCT 160098
Query 65475 TGATGGGAAGACCAACTTCTTTGAGAAGCGAGT 65507
|| || |||||||||||||| |||||||| ||
Sbjct 160097 TGGCGGCAAGACCAACTTCTTCGAGAAGCGTGT 160065
Score = 82.4 bits (90), Expect = 9e-11
Identities = 149/217 (69%), Gaps = 6/217 (3%)
Strand=Plus/Plus
Query 65004 AACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTT---GACACAAA 65060
||| || || || ||| |||||||| | ||||| ||| |||| | || | ||
Sbjct 409062 AACAGTTCCCTGCATTCGCAAGAAGGCTGACTGGGCCTTGACATGGATCACCGATAAGAA 409121
Query 65061 GTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTC 65120
|||| |||| ||| ||||| | || || ||| || |||||||||||||||
Sbjct 409122 GTCTA---CCTTTGCCACCCGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAG 409178
Query 65121 CGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTT 65180
||| | ||| | | || | ||| | |||||||| || |||||||| ||||| ||
Sbjct 409179 CGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTT 409238
Query 65181 CTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217
||| || || || || || || || |||||||| |||
Sbjct 409239 CTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCAC 409275
>seq28027
Length=10271
Score = 82.4 bits (90), Expect = 9e-11
Identities = 149/217 (69%), Gaps = 6/217 (3%)
Strand=Plus/Minus
Query 65004 AACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTT---GACACAAA 65060
||| || || || ||| |||||||| | ||||| ||| |||| | || | ||
Sbjct 5337 AACAGTTCCCTGCATTCGCAAGAAGGCTGACTGGGCCTTGACATGGATCACCGATAAGAA 5278
Query 65061 GTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTC 65120
|||| |||| ||| ||||| | || || ||| || |||||||||||||||
Sbjct 5277 GTCTA---CCTTTGCCACCCGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAG 5221
Query 65121 CGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTT 65180
||| | ||| | | || | ||| | |||||||| || |||||||| ||||| ||
Sbjct 5220 CGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTT 5161
Query 65181 CTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217
||| || || || || || || || |||||||| |||
Sbjct 5160 CTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCAC 5124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596360196613280
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