Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq24749 206 3e-48 seq27938 127 2e-24 seq18890 104 3e-17 seq28027 82.4 9e-11 >seq24749 Length=740841 Score = 206 bits (228), Expect = 3e-48 Identities = 937/1465 (64%), Gaps = 39/1465 (3%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT--TCAACGGCTCGATGGCATCCTCA 75203 |||||||| |||| ||||| ||| |||||| |||| ||| || |||| | Sbjct 415613 TACTTTGGCTTCAAGACCCTGGAGCGTTCCTATCTCCTCAA--GCTTGACGGCAAGATTG 415670 Query 75204 TGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTG 75263 || ||| ||| ||||| | ||||| || | |||| ||| || || || ||| Sbjct 415671 CCGAGCGCCCGCAGCACATGATTATGCGTGTTTCCGTCGGTATCTGGGGAGACAACGTTG 415730 Query 75264 ATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTA--TGTTCATTCACGCAACACC 75321 | |||| | ||||| ||| || |||||| || | | |||| |||||| | || Sbjct 415731 AGCGTGTCATTGAGACGTACAACCTCATGTCC--AGCAAATTCTTCACACACGCATCTCC 415788 Query 75322 AACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAA 75381 ||||||||||| ||||| || || | ||| |||| |||||||| | | || Sbjct 415789 TACCCTCTTCAACGCTGGCACGCCTCAGGCTCAGCTGTCGTCCTGCTTCCTGGTTGACAT 415848 Query 75382 CAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAA 75441 ||||| ||| || | |||||||| | || || | | ||||| ||||| || Sbjct 415849 GAAGGATGACAGCATTGAAGGTATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAA 415908 Query 75442 GTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCG 75501 | |||||| |||||||| || || ||||| | | |||| | ||| ||| Sbjct 415909 GATGGCTGGTGGTATTGGTCTGAACGTCCATCGCATCCGTGCCACTGGCTCTTACATTGC 415968 Query 75502 GGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGC 75561 || || || || ||| | || || | || ||||||||||| || ||| ||| || Sbjct 415969 CGGCACCAACGGCACTTCAAACGGCATCACGCCCATGCTTCGCGTCTTCAACAACACGGC 416028 Query 75562 GCGCTATGTAAATCA-AGCGG-----GGCGTCGCAAGGGGTCCATCGCGGTCTACTTGGA 75615 |||||| || | || |||| ||||| | || | | || ||||| | || Sbjct 416029 GCGCTACGTTGACCAGGGCGGCAACAAGCGTCCC---GGCGCTTTTGCCATCTACCTTGA 416085 Query 75616 ACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGA 75675 |||||||| || ||| || | ||||||||||| | || ||||| || | || || Sbjct 416086 GCCATGGCACGCTGATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGA 416145 Query 75676 GGCTCGGTGTAGAGATCTCTTTTCAT--CCCTGTGGATTCCAGACCTTTTCATGAAGCGG 75733 | ||| | | || ||||||| | |||||||||| || || || ||||||||||| Sbjct 416146 AGTTCGCGCTCGCGA--TCTTTTCCTGGCCCTGTGGATCCCCGATCTCTTCATGAAGCGT 416203 Query 75734 GTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC 75793 || ||| || || | ||| |||| | || || || || || || || | ||| Sbjct 416204 GTCGAGAAGAACGGCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGAC 416263 Query 75794 GCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG-AGGGTAGAGC--C 75850 ||||| |||||||| ||| | ||| ||||| || ||| || || || | Sbjct 416264 TGCTACGGTGACGAGTTTGAGGCCTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCCGC 416323 Query 75851 AATGCGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGAC 75909 || ||| | | || ||| || | ||||| | || | ||| | | ||||| ||||| Sbjct 416324 AA---GACCAT-CAAGGCGCAGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGAC 416379 Query 75910 TGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTT 75969 || | || | ||||| ||||||||| || ||| ||||| ||||| ||||| | Sbjct 416380 CGGCAACCCCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCT 416439 Query 75970 GGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGA 76029 || || || ||||| || || ||||| || ||| | |||||| | | ||||| Sbjct 416440 TGGTACCATTCGCAGCTCCAACCTGTGCACAGAGATTGTCGAGTACTCGGCACCCGATGA 416499 Query 76030 GACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCG 76089 | || || ||||| |||| || | ||||| || || || || | | | | Sbjct 416500 GGTTGCCGTCTGCAACCTGGCCTCTCTGGCCCTGCCCGCCTACGTTGATTACAACAACGG 416559 Query 76090 CACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCG 76149 | | ||| | | || || || | |||| || | || || || || ||| | Sbjct 416560 CGTGTATGACTTCAAGAAGCTCCACCAGGTCACTCAGGTCGTCGTCAGGAACCTCAACAG 416619 Query 76150 AGTCATTGACAGAAATTTTTATCCCG---TTGAGACTGCGCGAAAGTCTAATATGCGACA 76206 |||| ||| || ||| |||| | ||| || ||| | || || ||||| || Sbjct 416620 GATCATCGACGTGAACCATTACCCCGTCATCGAGGCT-CGCAACAG--CAACATGCGCCA 416676 Query 76207 CAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGC 76266 | || ||||| | ||||| || || | || |||| || || |||| | Sbjct 416677 TCGGCCCATTGGCCTTGGTGTCCAGGGCTTGGCTGATGCTTTCCTTGCTCTCCGCATGCC 416736 Query 76267 ATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGC 76326 ||||| || ||| ||||||||| | || | |||||||| ||||| || ||||| Sbjct 416737 CTTTGAGTCGCCTGAGGCCAAGGAGCTCAACAAGCAGATCTTTGAGACCATCTACCACGC 416796 Query 76327 ATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGG 76386 ||||| | || | | ||| | | |||| |||| || | |||||| Sbjct 416797 TGCCCTGACCATGTCATGCAAGCTCGCTCAGGAGGAAGGCCCCTACTCCACCTATGAGGG 416856 Query 76387 TTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAA 76446 || |||| ||||| || | ||||| | || |||| |||| || || || | || | Sbjct 416857 CTCGCCCGTCTCCCAGGGTATCCTTCAATACGACATGT-GGAACGTCAAGCCTA-CTGAC 416914 Query 76447 C--TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTT 76504 | | ||||||| | |||||| | |||||| | | || | |||||||||||| Sbjct 416915 CTTTGGGACTGGGCCGACCTCAAGAGCCAGATCAAGCAACATGGCGTCCGTAACAGTCTT 416974 Query 76505 TTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTT 76564 | |||| || ||||| || ||| ||| | || ||| | || || || || ||||| Sbjct 416975 CTCGTGGCGCCCATGCCCACGGCCAGTACCTCGCAGATCCTTGGCAACAACGAGTGCTTC 417034 Query 76565 GAACCATACACAACAAACATCTACC 76589 || || ||||| | |||||||||| Sbjct 417035 GAGCCTTACACGTCCAACATCTACC 417059 >seq27938 Length=10276 Score = 127 bits (140), Expect = 2e-24 Identities = 440/677 (65%), Gaps = 21/677 (3%) Strand=Plus/Minus Query 75401 GGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGG 75460 |||||||| | || || | | ||||| ||||| ||| |||||| |||||||| Sbjct 10267 GGTATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATTGGT 10208 Query 75461 ATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCA 75520 || || ||||| | | |||| | ||| ||| || || || || ||| Sbjct 10207 CTGAACGTCCATCGCATCCGTGCCACTGGCTCTTACATTGCCGGCACCAACGGCACTTCA 10148 Query 75521 GATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCA-AGC 75579 | || || | || ||||||||||| || ||| ||| |||||||| || | || || Sbjct 10147 AACGGCATCACGCCCATGCTTCGCGTCTTCAACAACACGGCGCGCTACGTTGACCAGGGC 10088 Query 75580 GG-----GGCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGATATC 75634 || ||||| | || | | || ||||| | || |||||||| || ||| || Sbjct 10087 GGCAACAAGCGTCCC---GGCGCTTTTGCCATCTACCTTGAGCCATGGCACGCTGATGTC 10031 Query 75635 ATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTC 75694 | ||||||||||| | || ||||| || | || || | ||| | | || || Sbjct 10030 TTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAAGTTCGCGCTCGCGA--TC 9973 Query 75695 TTTTCAT--CCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAAT 75752 ||||| | |||||||||| || || || ||||||||||| || ||| || || | | Sbjct 9972 TTTTCCTGGCCCTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAGAAGAACGGCGACT 9913 Query 75753 GGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTG 75812 || |||| | || || || || || || || | ||| ||||| ||||||| Sbjct 9912 GGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTACGGTGACGAGTTTG 9853 Query 75813 AAGCCCTCTACACAAAGTATGAAGAGG-AGGGTAGAGC--CAATGCGACTGTACCAGCCG 75869 | ||| | ||| ||||| || ||| || || || ||| ||| | | || || Sbjct 9852 AGGCCTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCCGCAA---GACCAT-CAAGGCG 9797 Query 75870 CCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTT 75928 | || | ||||| | || | ||| | | ||||| ||||| || | || | ||||| Sbjct 9796 CAGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGCTC 9737 Query 75929 TACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCA 75988 ||||||||| || ||| ||||| ||||| ||||| | || || || ||||| Sbjct 9736 TACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGTACCATTCGCAGCTCC 9677 Query 75989 AATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTG 76048 || || ||||| || ||| | |||||| | | |||||| || || ||||| || Sbjct 9676 AACCTGTGCACAGAGATTGTCGAGTACTCGGCACCCGATGAGGTTGCCGTCTGCAACCTG 9617 Query 76049 GCATCAATCGCCCTTCC 76065 || || | ||||| || Sbjct 9616 GCCTCTCTGGCCCTGCC 9600 >seq18890 Length=446397 Score = 104 bits (114), Expect = 3e-17 Identities = 332/513 (65%), Gaps = 18/513 (4%) Strand=Plus/Minus Query 65004 AACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTT---GACACAAA 65060 ||| || || || ||| |||||||| | ||||| ||| |||| | || | || Sbjct 160568 AACAGTTCCCTGCATTCGCAAGAAGGCTGACTGGGCCTTGACATGGATCACCGATAAGAA 160509 Query 65061 GTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTC 65120 |||| |||| ||| ||||| | || || ||| || ||||||||||||||| Sbjct 160508 GTCTA---CCTTTGCCACCCGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAG 160452 Query 65121 CGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTT 65180 ||| | ||| | | || | ||| | |||||||| || |||||||| ||||| || Sbjct 160451 CGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTT 160392 Query 65181 CTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTT 65240 ||| || || || || || || || |||||||| ||| || || || ||| || Sbjct 160391 CTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACCGACTTCGCTTGTCTGCTGTT 160332 Query 65241 CAAGACTTTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGT 65300 | ||| || | |||| | | ||| |||| | ||| || | || || || Sbjct 160331 CTCTCACTTGAACAACCGCCCCAGCAAGCAGACTGTCCAAGACATTGTCACCGATGCTGT 160272 Query 65301 TGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTC 65360 | |||||| ||| |||| | || || ||||| ||| || |||| |||||| | Sbjct 160271 CAATATTGAGCAAGAGTTCCTGACTGAGGCTCTCCCCTGTGGCCTGCTCGGCATGAACGC 160212 Query 65361 TGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGT 65420 | ||| |||||||||||| || | || || |||||| || | | Sbjct 160211 TACTCTCATGAAGCAGTACATTGAGTTCGTTGCAGACCGCCTCCTC------GTCGCCCT 160158 Query 65421 -GCCACCCA-----TTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCT 65474 | || | | ||| || || | || ||||| ||||| ||||| |||||| || Sbjct 160157 CGGCAACGAGAAGGTTTACAAGGCTACCAACCCATTCGACTTCATGGAGAACATTTCTCT 160098 Query 65475 TGATGGGAAGACCAACTTCTTTGAGAAGCGAGT 65507 || || |||||||||||||| |||||||| || Sbjct 160097 TGGCGGCAAGACCAACTTCTTCGAGAAGCGTGT 160065 Score = 82.4 bits (90), Expect = 9e-11 Identities = 149/217 (69%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 65004 AACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTT---GACACAAA 65060 ||| || || || ||| |||||||| | ||||| ||| |||| | || | || Sbjct 409062 AACAGTTCCCTGCATTCGCAAGAAGGCTGACTGGGCCTTGACATGGATCACCGATAAGAA 409121 Query 65061 GTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTC 65120 |||| |||| ||| ||||| | || || ||| || ||||||||||||||| Sbjct 409122 GTCTA---CCTTTGCCACCCGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAG 409178 Query 65121 CGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTT 65180 ||| | ||| | | || | ||| | |||||||| || |||||||| ||||| || Sbjct 409179 CGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTT 409238 Query 65181 CTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 ||| || || || || || || || |||||||| ||| Sbjct 409239 CTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCAC 409275 >seq28027 Length=10271 Score = 82.4 bits (90), Expect = 9e-11 Identities = 149/217 (69%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 65004 AACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTT---GACACAAA 65060 ||| || || || ||| |||||||| | ||||| ||| |||| | || | || Sbjct 5337 AACAGTTCCCTGCATTCGCAAGAAGGCTGACTGGGCCTTGACATGGATCACCGATAAGAA 5278 Query 65061 GTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTC 65120 |||| |||| ||| ||||| | || || ||| || ||||||||||||||| Sbjct 5277 GTCTA---CCTTTGCCACCCGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAG 5221 Query 65121 CGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTT 65180 ||| | ||| | | || | ||| | |||||||| || |||||||| ||||| || Sbjct 5220 CGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTT 5161 Query 65181 CTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 ||| || || || || || || || |||||||| ||| Sbjct 5160 CTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCAC 5124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596360196613280