Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq23972 93.3 8e-14 seq11113 93.3 8e-14 >seq23972 Length=267833 Score = 93.3 bits (102), Expect = 8e-14 Identities = 162/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | || || || || || | || | ||| || ||| || Sbjct 225302 ATTTGCATACCACCACGGAGGCGGAGAACGAGGTGAAGAGTGGACTCCTTCTGAATGTTG 225243 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| || || | | ||| || | || ||||| || || || | | |||||| Sbjct 225242 TAGTCGGACAAAGTACGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGG 225183 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || || || || || || || || | || | || ||| || |||||| Sbjct 225182 TCGGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATGGTGTCGGAA 225123 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || ||||| || || || || || ||||| || ||||| || ||||| Sbjct 225122 GACTCCACCTCAAGAGTGATGGTCTTGCCGGTCAGCGTCTTGACAAAGATCTGCAT 225067 >seq11113 Length=490148 Score = 93.3 bits (102), Expect = 8e-14 Identities = 162/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | || || || || || | || | ||| || ||| || Sbjct 77438 ATTTGCATACCACCACGAAGGCGGAGAACGAGGTGAAGAGTCGACTCCTTCTGAATGTTG 77497 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| | || | | ||| || | || ||||| ||||| || | | |||||| Sbjct 77498 TAGTCGGACAGAGTACGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGGCGCTGTTGG 77557 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || || || || || || || |||| || | || || || |||||| Sbjct 77558 TCGGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAA 77617 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || ||||| || || || || || || || || ||||| || ||||| Sbjct 77618 GACTCAACCTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 77673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899338610059920