Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq22750 131 5e-25
seq21512 131 5e-25
seq18446 131 5e-25
seq20929 114 4e-20
seq28027 113 1e-19
seq18890 113 1e-19
seq24749 91.5 4e-13
>seq22750
Length=328496
Score = 131 bits (144), Expect = 5e-25
Identities = 180/252 (71%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 302592 ACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACG 302651
||||||||| || ||||| || | || || ||||| |||||||| ||||| ||||
Sbjct 197885 ACGACGCTGGATGTAACCCGTCTCGGCAGTCTTGACAGCAGTATCAATAAGACCCTCACG 197944
Query 302652 ACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTC 302711
|||| |||| || |||||||| | || || || || | | | | ||| ||||
Sbjct 197945 ACCAGCCATGGCGTGGAAGAAGAATTCGCTAGGAGTGAGGCCACGGAGATACGAGTTCTC 198004
Query 302712 AACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTT 302771
||||||||| || || || || || | || |||||| ||||| ||||| || | ||
Sbjct 198005 AACGAAACCGCGGGCTTCAGGAGAGTAATCATCCTTGGTGAAGTGAGGCAGAGTGCGGTA 198064
Query 302772 CTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCAT 302831
|| ||||| | || ||||||||||| || ||| | ||||| || | ||| | ||||
Sbjct 198065 CTTGAAGCCGAAAGGAATACGCTTTCCCTCGACGATTTGCTGACCGACCAACGCAGTCAT 198124
Query 302832 CTGCGAAATATT 302843
||||||||| ||
Sbjct 198125 CTGCGAAATGTT 198136
>seq21512
Length=824
Score = 131 bits (144), Expect = 5e-25
Identities = 180/252 (71%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 302592 ACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACG 302651
||||||||| || ||||| || | || || ||||| |||||||| ||||| ||||
Sbjct 54 ACGACGCTGGATGTAACCCGTCTCGGCAGTCTTGACAGCAGTATCAATAAGACCCTCACG 113
Query 302652 ACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTC 302711
|||| |||| || |||||||| | || || || || | | | | ||| ||||
Sbjct 114 ACCAGCCATGGCGTGGAAGAAGAATTCGCTAGGAGTGAGGCCACGGAGATACGAGTTCTC 173
Query 302712 AACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTT 302771
||||||||| || || || || || | || |||||| ||||| ||||| || | ||
Sbjct 174 AACGAAACCGCGGGCTTCAGGAGAGTAATCATCCTTGGTGAAGTGAGGCAGAGTGCGGTA 233
Query 302772 CTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCAT 302831
|| ||||| | || ||||||||||| || ||| | ||||| || | ||| | ||||
Sbjct 234 CTTGAAGCCGAAAGGAATACGCTTTCCCTCGACGATTTGCTGACCGACCAACGCAGTCAT 293
Query 302832 CTGCGAAATATT 302843
||||||||| ||
Sbjct 294 CTGCGAAATGTT 305
>seq18446
Length=73582
Score = 131 bits (144), Expect = 5e-25
Identities = 180/252 (71%), Gaps = 0/252 (0%)
Strand=Plus/Minus
Query 302592 ACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACG 302651
||||||||| || ||||| || | || || ||||| |||||||| ||||| ||||
Sbjct 51126 ACGACGCTGGATGTAACCCGTCTCGGCAGTCTTGACAGCAGTATCAATAAGACCCTCACG 51067
Query 302652 ACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTC 302711
|||| |||| || |||||||| | || || || || | | | | ||| ||||
Sbjct 51066 ACCAGCCATGGCGTGGAAGAAGAATTCGCTAGGAGTGAGGCCACGGAGATACGAGTTCTC 51007
Query 302712 AACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTT 302771
||||||||| || || || || || | || |||||| ||||| ||||| || | ||
Sbjct 51006 AACGAAACCGCGGGCTTCAGGAGAGTAATCATCCTTGGTGAAGTGAGGCAGAGTGCGGTA 50947
Query 302772 CTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCAT 302831
|| ||||| | || ||||||||||| || ||| | ||||| || | ||| | ||||
Sbjct 50946 CTTGAAGCCGAAAGGAATACGCTTTCCCTCGACGATTTGCTGACCGACCAACGCAGTCAT 50887
Query 302832 CTGCGAAATATT 302843
||||||||| ||
Sbjct 50886 CTGCGAAATGTT 50875
>seq20929
Length=43971
Score = 114 bits (126), Expect = 4e-20
Identities = 387/592 (65%), Gaps = 22/592 (4%)
Strand=Plus/Minus
Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466
|| |||||||| | | ||| ||||| || | | ||||||| || | ||| | | ||
Sbjct 29439 ATGAGACCACAGATTTCACAAACATGAACCCGGAAAGCATCCGAGACCTCAAACAACCTC 29380
Query 251467 CCCTTGGTGAAGCGAGAT-GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAA 251525
|||| ||| |||| |||||||||| |||||| ||||| |||||||| || |||||
Sbjct 29379 TCCTTCAAGAA-CGAGGCAGCACCGTGTGCAATCATGCAATCTCGCTCCATCTCGCCGAA 29321
Query 251526 ACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGG 251585
|| | ||||||||||| || | ||| ||| | ||||| | || | | || ||
Sbjct 29320 CCGTAAGCCACCATCGCGGGCTCGACCTTCGACTGGCTGCCTTGTCATGATCTGCACGGG 29261
Query 251586 ACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGC 251645
||| || ||| ||| ||| || | ||||| || || |||||||| | |
Sbjct 29260 GCCGCGGGCGCGTGCATGAATCTTGTCGTCGACCATGTGACGCAGCCGCTGGTAATAAGT 29201
Query 251646 GGGACCGATGAAGATGCTCGA--AGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACT 251703
|| || | || || | || | ||| || || |||||| || |||| ||||||||
Sbjct 29200 TGGTCCAA--AAAATACCTGAGCACGCAATTTCTTTCCAGTGTGACCGTTGTACATAACC 29143
Query 251704 TCGTTTCCATTAGATTCATAACCAAGTT---TCTGTAGCTCTGAAGCAATATCACCAATC 251760
||| ||| ||||| ||| || | | | |||| || | || || ||
Sbjct 29142 TCGAATCCTCGAGATTGATATCCTTGGTCGCGGAGAAGCTGCGAGACGGAGTCGACAGTC 29083
Query 251761 TTGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAA--TCAACACTTTGC 251818
| | | ||||| || ||||||| | | |||| || || || |||||||||
Sbjct 29082 ---ACGTCGGTAAAAGGCGTTGCGTCTCCTTCCATACCC--TTCAATGTCGACACTTTGC 29028
Query 251819 CTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGA 251878
| || || ||| || || || ||||| || || || ||||| || ||||
Sbjct 29027 TAAGCAGACATTCAATCAAATGCGCAATGGTCATTCGTGAAGGGATGGCATGAGGGTTGA 28968
Query 251879 TGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT--CAATA-A 251935
|||||||||| || | | || || | ||||||||||| || ||||| | ||
Sbjct 28967 TGATGATGTCCGGAGTGATACCCTCCGAGGTGAAGGGCATGTC---TTCCTGGCGGTACG 28911
Query 251936 TGTTTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
|| ||||| ||||| || || |||||||||||| ||||| || || ||
Sbjct 28910 TGACACCAATCGTTCCTTTCTGACCGTGACGAGAAGCAAACTTGTCGCCGAT 28859
>seq28027
Length=10271
Score = 113 bits (124), Expect = 1e-19
Identities = 157/220 (71%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496
|||| || ||| ||||| |||||||||| | | ||||||| || ||| | |
Sbjct 5332 TTCCCTGCATTCGCAAGAAGGCTGACTGGGCCTTGACATGGATCACCGATAAGAAGTCTA 5273
Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556
||||| || || ||||| ||||| || || || ||||| || || ||||| ||||| |
Sbjct 5272 CCTTTGCCACCCGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAGCGGTGCCT 5213
Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616
|| ||| || || ||||| || ||||| || | | ||||| ||| ||| || ||||
Sbjct 5212 TCGCCTCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTTCTCCAACG 5153
Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656
| || || || | ||||||| ||||||||||| || ||
Sbjct 5152 AGCTCATCTCTCGTGACGAGGGTCTTCACACCGACTTCGC 5113
>seq18890
Length=446397
Score = 113 bits (124), Expect = 1e-19
Identities = 157/220 (71%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496
|||| || ||| ||||| |||||||||| | | ||||||| || ||| | |
Sbjct 160563 TTCCCTGCATTCGCAAGAAGGCTGACTGGGCCTTGACATGGATCACCGATAAGAAGTCTA 160504
Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556
||||| || || ||||| ||||| || || || ||||| || || ||||| ||||| |
Sbjct 160503 CCTTTGCCACCCGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAGCGGTGCCT 160444
Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616
|| ||| || || ||||| || ||||| || | | ||||| ||| ||| || ||||
Sbjct 160443 TCGCCTCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTTCTCCAACG 160384
Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656
| || || || | ||||||| ||||||||||| || ||
Sbjct 160383 AGCTCATCTCTCGTGACGAGGGTCTTCACACCGACTTCGC 160344
Score = 113 bits (124), Expect = 1e-19
Identities = 157/220 (71%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496
|||| || ||| ||||| |||||||||| | | ||||||| || ||| | |
Sbjct 409067 TTCCCTGCATTCGCAAGAAGGCTGACTGGGCCTTGACATGGATCACCGATAAGAAGTCTA 409126
Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556
||||| || || ||||| ||||| || || || ||||| || || ||||| ||||| |
Sbjct 409127 CCTTTGCCACCCGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAGCGGTGCCT 409186
Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616
|| ||| || || ||||| || ||||| || | | ||||| ||| ||| || ||||
Sbjct 409187 TCGCCTCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTTCTCCAACG 409246
Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656
| || || || | ||||||| ||||||||||| || ||
Sbjct 409247 AGCTCATCTCTCGTGACGAGGGTCTTCACACCGACTTCGC 409286
>seq24749
Length=740841
Score = 91.5 bits (100), Expect = 4e-13
Identities = 450/712 (63%), Gaps = 11/712 (2%)
Strand=Plus/Minus
Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689
||| || |||||||| ||||||||| || || ||||| || | |||||||||||
Sbjct 416485 GTACTCGACAATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTGGTT 416426
Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749
|| | ||| || ||||||||| || ||| | ||| | || ||||| |||| ||
Sbjct 416425 GCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGC 416366
Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809
|| || | ||| || | | || || || |||| | |||| ||
Sbjct 416365 CTCGAGGACGGCGTACCAAAGCTTCTGCGCCTTGATGGTCTTGCGGCCCTTGCCAGCCTT 416306
Query 155810 CTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCA 155869
||| || ||| |||| | | || |||||||| || ||| || ||||||||
Sbjct 416305 CTCGTACTTCTCGTACAAGGCCTCAAACTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCA 416246
Query 155870 CTTATCGGGGCAAAACAGCGACCAAATT---TTATTACCGATTACACGCTCCATAAATAC 155926
|| | |||||| | || | ||| || || ||| |||||| ||| || |
Sbjct 416245 CTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGA---CACGCTTCATGAAGAG 416189
Query 155927 ATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATT 155986
||| ||| | || |||||| || | || ||||| | |||||| ||
Sbjct 416188 ATCGGGGATCCACAGGGCCAGGAAAAGATCGCGAGCGCGAACTTCCTCCTTGCCGTGGTT 416129
Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046
||| || || || | ||| || | ||||| || |||||| || || || |||||
Sbjct 416128 CTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAA 416069
Query 156047 ACTACC---ATTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103
| || | | | ||||| ||||| || || || || || || || |||||||| |
Sbjct 416068 AGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAGACGCG 416009
Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGA 156163
||||| || | || || || |||||||| ||||| ||| ||| | || |||| |
Sbjct 416008 AAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCAGTGGC 415949
Query 156164 GCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATT 156222
|| | ||| | | || ||||||||||| | |||| || || || || ||
Sbjct 415948 ACGGATGCGATGGACGTTCAGACCAATACCACCAG-CCATCTTGGAGATCATGGCACAGG 415890
Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACG 156282
||| | || | | | ||||||||||| ||||| | ||| | || |||| |
Sbjct 415889 TCTTGAGGGTGTCGTAGATACCTTCAATGCTGTCATCCTTCATGTCAACCAGGAAGCAGG 415830
Query 156283 AACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATG 156334
| | |||| | || || ||||||||||| || ||||| | ||| ||
Sbjct 415829 ACGACAGCTGAGCCTGAGGCGTGCCAGCGTTGAAGAGGGTAGGAGATGCGTG 415778
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471288057965297
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |