Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq22750 131 5e-25 seq21512 131 5e-25 seq18446 131 5e-25 seq20929 114 4e-20 seq28027 113 1e-19 seq18890 113 1e-19 seq24749 91.5 4e-13 >seq22750 Length=328496 Score = 131 bits (144), Expect = 5e-25 Identities = 180/252 (71%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 302592 ACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACG 302651 ||||||||| || ||||| || | || || ||||| |||||||| ||||| |||| Sbjct 197885 ACGACGCTGGATGTAACCCGTCTCGGCAGTCTTGACAGCAGTATCAATAAGACCCTCACG 197944 Query 302652 ACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTC 302711 |||| |||| || |||||||| | || || || || | | | | ||| |||| Sbjct 197945 ACCAGCCATGGCGTGGAAGAAGAATTCGCTAGGAGTGAGGCCACGGAGATACGAGTTCTC 198004 Query 302712 AACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTT 302771 ||||||||| || || || || || | || |||||| ||||| ||||| || | || Sbjct 198005 AACGAAACCGCGGGCTTCAGGAGAGTAATCATCCTTGGTGAAGTGAGGCAGAGTGCGGTA 198064 Query 302772 CTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCAT 302831 || ||||| | || ||||||||||| || ||| | ||||| || | ||| | |||| Sbjct 198065 CTTGAAGCCGAAAGGAATACGCTTTCCCTCGACGATTTGCTGACCGACCAACGCAGTCAT 198124 Query 302832 CTGCGAAATATT 302843 ||||||||| || Sbjct 198125 CTGCGAAATGTT 198136 >seq21512 Length=824 Score = 131 bits (144), Expect = 5e-25 Identities = 180/252 (71%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 302592 ACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACG 302651 ||||||||| || ||||| || | || || ||||| |||||||| ||||| |||| Sbjct 54 ACGACGCTGGATGTAACCCGTCTCGGCAGTCTTGACAGCAGTATCAATAAGACCCTCACG 113 Query 302652 ACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTC 302711 |||| |||| || |||||||| | || || || || | | | | ||| |||| Sbjct 114 ACCAGCCATGGCGTGGAAGAAGAATTCGCTAGGAGTGAGGCCACGGAGATACGAGTTCTC 173 Query 302712 AACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTT 302771 ||||||||| || || || || || | || |||||| ||||| ||||| || | || Sbjct 174 AACGAAACCGCGGGCTTCAGGAGAGTAATCATCCTTGGTGAAGTGAGGCAGAGTGCGGTA 233 Query 302772 CTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCAT 302831 || ||||| | || ||||||||||| || ||| | ||||| || | ||| | |||| Sbjct 234 CTTGAAGCCGAAAGGAATACGCTTTCCCTCGACGATTTGCTGACCGACCAACGCAGTCAT 293 Query 302832 CTGCGAAATATT 302843 ||||||||| || Sbjct 294 CTGCGAAATGTT 305 >seq18446 Length=73582 Score = 131 bits (144), Expect = 5e-25 Identities = 180/252 (71%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 302592 ACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACG 302651 ||||||||| || ||||| || | || || ||||| |||||||| ||||| |||| Sbjct 51126 ACGACGCTGGATGTAACCCGTCTCGGCAGTCTTGACAGCAGTATCAATAAGACCCTCACG 51067 Query 302652 ACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTC 302711 |||| |||| || |||||||| | || || || || | | | | ||| |||| Sbjct 51066 ACCAGCCATGGCGTGGAAGAAGAATTCGCTAGGAGTGAGGCCACGGAGATACGAGTTCTC 51007 Query 302712 AACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTT 302771 ||||||||| || || || || || | || |||||| ||||| ||||| || | || Sbjct 51006 AACGAAACCGCGGGCTTCAGGAGAGTAATCATCCTTGGTGAAGTGAGGCAGAGTGCGGTA 50947 Query 302772 CTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCAT 302831 || ||||| | || ||||||||||| || ||| | ||||| || | ||| | |||| Sbjct 50946 CTTGAAGCCGAAAGGAATACGCTTTCCCTCGACGATTTGCTGACCGACCAACGCAGTCAT 50887 Query 302832 CTGCGAAATATT 302843 ||||||||| || Sbjct 50886 CTGCGAAATGTT 50875 >seq20929 Length=43971 Score = 114 bits (126), Expect = 4e-20 Identities = 387/592 (65%), Gaps = 22/592 (4%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || |||||||| | | ||| ||||| || | | ||||||| || | ||| | | || Sbjct 29439 ATGAGACCACAGATTTCACAAACATGAACCCGGAAAGCATCCGAGACCTCAAACAACCTC 29380 Query 251467 CCCTTGGTGAAGCGAGAT-GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAA 251525 |||| ||| |||| |||||||||| |||||| ||||| |||||||| || ||||| Sbjct 29379 TCCTTCAAGAA-CGAGGCAGCACCGTGTGCAATCATGCAATCTCGCTCCATCTCGCCGAA 29321 Query 251526 ACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGG 251585 || | ||||||||||| || | ||| ||| | ||||| | || | | || || Sbjct 29320 CCGTAAGCCACCATCGCGGGCTCGACCTTCGACTGGCTGCCTTGTCATGATCTGCACGGG 29261 Query 251586 ACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGC 251645 ||| || ||| ||| ||| || | ||||| || || |||||||| | | Sbjct 29260 GCCGCGGGCGCGTGCATGAATCTTGTCGTCGACCATGTGACGCAGCCGCTGGTAATAAGT 29201 Query 251646 GGGACCGATGAAGATGCTCGA--AGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACT 251703 || || | || || | || | ||| || || |||||| || |||| |||||||| Sbjct 29200 TGGTCCAA--AAAATACCTGAGCACGCAATTTCTTTCCAGTGTGACCGTTGTACATAACC 29143 Query 251704 TCGTTTCCATTAGATTCATAACCAAGTT---TCTGTAGCTCTGAAGCAATATCACCAATC 251760 ||| ||| ||||| ||| || | | | |||| || | || || || Sbjct 29142 TCGAATCCTCGAGATTGATATCCTTGGTCGCGGAGAAGCTGCGAGACGGAGTCGACAGTC 29083 Query 251761 TTGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAA--TCAACACTTTGC 251818 | | | ||||| || ||||||| | | |||| || || || ||||||||| Sbjct 29082 ---ACGTCGGTAAAAGGCGTTGCGTCTCCTTCCATACCC--TTCAATGTCGACACTTTGC 29028 Query 251819 CTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGA 251878 | || || ||| || || || ||||| || || || ||||| || |||| Sbjct 29027 TAAGCAGACATTCAATCAAATGCGCAATGGTCATTCGTGAAGGGATGGCATGAGGGTTGA 28968 Query 251879 TGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT--CAATA-A 251935 |||||||||| || | | || || | ||||||||||| || ||||| | || Sbjct 28967 TGATGATGTCCGGAGTGATACCCTCCGAGGTGAAGGGCATGTC---TTCCTGGCGGTACG 28911 Query 251936 TGTTTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 || ||||| ||||| || || |||||||||||| ||||| || || || Sbjct 28910 TGACACCAATCGTTCCTTTCTGACCGTGACGAGAAGCAAACTTGTCGCCGAT 28859 >seq28027 Length=10271 Score = 113 bits (124), Expect = 1e-19 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 |||| || ||| ||||| |||||||||| | | ||||||| || ||| | | Sbjct 5332 TTCCCTGCATTCGCAAGAAGGCTGACTGGGCCTTGACATGGATCACCGATAAGAAGTCTA 5273 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 ||||| || || ||||| ||||| || || || ||||| || || ||||| ||||| | Sbjct 5272 CCTTTGCCACCCGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAGCGGTGCCT 5213 Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 || ||| || || ||||| || ||||| || | | ||||| ||| ||| || |||| Sbjct 5212 TCGCCTCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTTCTCCAACG 5153 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 | || || || | ||||||| ||||||||||| || || Sbjct 5152 AGCTCATCTCTCGTGACGAGGGTCTTCACACCGACTTCGC 5113 >seq18890 Length=446397 Score = 113 bits (124), Expect = 1e-19 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 |||| || ||| ||||| |||||||||| | | ||||||| || ||| | | Sbjct 160563 TTCCCTGCATTCGCAAGAAGGCTGACTGGGCCTTGACATGGATCACCGATAAGAAGTCTA 160504 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 ||||| || || ||||| ||||| || || || ||||| || || ||||| ||||| | Sbjct 160503 CCTTTGCCACCCGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAGCGGTGCCT 160444 Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 || ||| || || ||||| || ||||| || | | ||||| ||| ||| || |||| Sbjct 160443 TCGCCTCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTTCTCCAACG 160384 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 | || || || | ||||||| ||||||||||| || || Sbjct 160383 AGCTCATCTCTCGTGACGAGGGTCTTCACACCGACTTCGC 160344 Score = 113 bits (124), Expect = 1e-19 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 |||| || ||| ||||| |||||||||| | | ||||||| || ||| | | Sbjct 409067 TTCCCTGCATTCGCAAGAAGGCTGACTGGGCCTTGACATGGATCACCGATAAGAAGTCTA 409126 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 ||||| || || ||||| ||||| || || || ||||| || || ||||| ||||| | Sbjct 409127 CCTTTGCCACCCGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAGCGGTGCCT 409186 Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 || ||| || || ||||| || ||||| || | | ||||| ||| ||| || |||| Sbjct 409187 TCGCCTCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTTCTCCAACG 409246 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 | || || || | ||||||| ||||||||||| || || Sbjct 409247 AGCTCATCTCTCGTGACGAGGGTCTTCACACCGACTTCGC 409286 >seq24749 Length=740841 Score = 91.5 bits (100), Expect = 4e-13 Identities = 450/712 (63%), Gaps = 11/712 (2%) Strand=Plus/Minus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || |||||||| ||||||||| || || ||||| || | ||||||||||| Sbjct 416485 GTACTCGACAATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTGGTT 416426 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || | ||| || ||||||||| || ||| | ||| | || ||||| |||| || Sbjct 416425 GCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGC 416366 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 || || | ||| || | | || || || |||| | |||| || Sbjct 416365 CTCGAGGACGGCGTACCAAAGCTTCTGCGCCTTGATGGTCTTGCGGCCCTTGCCAGCCTT 416306 Query 155810 CTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCA 155869 ||| || ||| |||| | | || |||||||| || ||| || |||||||| Sbjct 416305 CTCGTACTTCTCGTACAAGGCCTCAAACTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCA 416246 Query 155870 CTTATCGGGGCAAAACAGCGACCAAATT---TTATTACCGATTACACGCTCCATAAATAC 155926 || | |||||| | || | ||| || || ||| |||||| ||| || | Sbjct 416245 CTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGA---CACGCTTCATGAAGAG 416189 Query 155927 ATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATT 155986 ||| ||| | || |||||| || | || ||||| | |||||| || Sbjct 416188 ATCGGGGATCCACAGGGCCAGGAAAAGATCGCGAGCGCGAACTTCCTCCTTGCCGTGGTT 416129 Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046 ||| || || || | ||| || | ||||| || |||||| || || || ||||| Sbjct 416128 CTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAA 416069 Query 156047 ACTACC---ATTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103 | || | | | ||||| ||||| || || || || || || || |||||||| | Sbjct 416068 AGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAGACGCG 416009 Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGA 156163 ||||| || | || || || |||||||| ||||| ||| ||| | || |||| | Sbjct 416008 AAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCAGTGGC 415949 Query 156164 GCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATT 156222 || | ||| | | || ||||||||||| | |||| || || || || || Sbjct 415948 ACGGATGCGATGGACGTTCAGACCAATACCACCAG-CCATCTTGGAGATCATGGCACAGG 415890 Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACG 156282 ||| | || | | | ||||||||||| ||||| | ||| | || |||| | Sbjct 415889 TCTTGAGGGTGTCGTAGATACCTTCAATGCTGTCATCCTTCATGTCAACCAGGAAGCAGG 415830 Query 156283 AACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATG 156334 | | |||| | || || ||||||||||| || ||||| | ||| || Sbjct 415829 ACGACAGCTGAGCCTGAGGCGTGCCAGCGTTGAAGAGGGTAGGAGATGCGTG 415778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471288057965297