Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq24749 150 2e-31 seq23972 125 6e-24 seq11113 122 8e-23 seq26527 95.1 1e-14 seq22587 95.1 1e-14 >seq24749 Length=740841 Score = 150 bits (166), Expect = 2e-31 Identities = 1061/1681 (63%), Gaps = 70/1681 (4%) Strand=Plus/Minus Query 138358 ATCTCCCACACGGTCTTGTATAGATCACGAAT--ATGTCG-CGGTATTGTTGCA-ATATT 138413 |||||||| || |||||||| || || | | |||| ||| | ||||| || || Sbjct 417240 ATCTCCCAGACAGTCTTGTACAGG----GACTTGACGTCGGCGGGAATGTTGGGGATGTT 417185 Query 138414 TTGAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAA 138473 || ||| || || | |||||||||||||| ||||| ||| | ||| | | Sbjct 417184 CTGGATGGAACCATTCTCGGCAATGATGCGATTCTTCATGCTATCAGACCAAAGA-CCCA 417126 Query 138474 CTTGATCAAG-TCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTC 138532 | | |||| || || | ||| | ||| | |||||| || || ||||| | || | Sbjct 417125 TGTCAACAAGATCCTTGAGCAGCCAGGGGTTGACGACCTGGAACTCGCCGGCGAGCACAC 417066 Query 138533 GACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAG 138592 | || ||| |||||| ||| ||||||| || | |||||||| || || ||||| | Sbjct 417065 GGCGCTGGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCGTTGTTGCCAAGGATCTGCG 417006 Query 138593 CCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGA 138652 || | || || |||||| |||||| | |||| || || | || || |||||| Sbjct 417005 AGGTACTGGCCGTGGGCATGGGCGCCACGAGAAGACTGTTACGGACGCCATGTTGCTTGA 416946 Query 138653 TTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGT 138712 | | |||||| | ||||||||| | || |||| || ||||||||| |||| Sbjct 416945 TCTGGCTCTTGAGGTCGGCCCAGTCCCAAAGGTCAGTAGGCTTGACGTTCCACATGTCGT 416886 Query 138713 ACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTT 138772 | || | || ||| |||| ||| || || | ||| || ||| | Sbjct 416885 ATTGAAGGATACCCTGGGAGACGGGCGAGCCCTCATAGGTGGAGTAGGGGCCTTCCTCCT 416826 Query 138773 GCGCCAACTCGTTGCTCGCCTCG---AGCGCACCATAGTAAATAGTTTCGGCAATCTGCT 138829 | || | | |||| | | | || ||| | | ||| || || || ||||||| Sbjct 416825 GAGCGAGC---TTGCATGACATGGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCTGCT 416769 Query 138830 GATTGAGCAATCGGGCCTC-GGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCG 138888 |||||| |||||| |||| ||| | ||||||||||| ||| || || Sbjct 416768 TGTTGAGCTCCTTGGCCTCAGGCG-ACTCAAAGGGCATGCGGAGAGCAAGGAAAGCATCA 416710 Query 138889 GCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCG-GC 138947 |||| || || || || | || | || |||||||||| || ||| ||||| || Sbjct 416709 GCCAAGCCCTGGACACCAAGGCCAATGGGCCGATGGCGCA----TGTTGCTGTTGCGAGC 416654 Query 138948 TTCGAT---AGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTT 139004 ||||| || |||| ||| || |||||||| |||| | || | ||||| |||| Sbjct 416653 CTCGATGACGGGGTAATGGTTCACGTCGATGATCCTGTTGAGGTTCCTGACGACGACCTG 416594 Query 139005 AGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGAC 139064 ||| || | | | || || || ||| ||||| || ||| | || Sbjct 416593 AGTGACCTGGTGGAGCTTCTTGAAGTCATACACGCCGTTGTTGTAATCAACGTAGGCGGG 416534 Query 139065 AAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTA 139124 | | || | ||||| | |||||| || || || || ||||| | ||| Sbjct 416533 CA-----GGGCCAGA----GAGGCCAGGTTGCAGACGGCAACCTCATCGGGTGCCGAGTA 416483 Query 139125 TTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCT 139184 |||||||| || | |||| || | || ||||| | || | || ||||| Sbjct 416482 CTCGACAATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCT 416423 Query 139185 TTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTC 139244 || ||||| || ||| ||||| ||||| | || |||| || || || | ||| Sbjct 416422 CTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTC 416363 Query 139245 TATAATGAATTTGAACAAG--TC----CCTAGCTTGTATTTGACGCACGTAAAGTTCGTC 139298 | | | | | ||| || ||| | | || ||| || | | | | Sbjct 416362 GAGGACGGCGTACCA-AAGCTTCTGCGCCTTGATGGT-CTTGCGGCCCTT----GCCAGC 416309 Query 139299 GCGCTCGTACTTTTCGTAGAGTTCGTCGAA-TCGTTCACCGTAGGCGTCAGAAAGATCGC 139357 ||||||||| ||||| | | || || ||| ||||||||| ||||| ||| | Sbjct 416308 CTTCTCGTACTTCTCGTACAAGGCCTCAAACTCG-TCACCGTAGCAGTCAGCAAGGCCAG 416250 Query 139358 GACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACA 139417 | |||| || || |||||||| | ||| |||||||| || ||| ||| ||||||| | Sbjct 416249 GGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGA 416190 Query 139418 GATCCGGAATCCACAAAGCGAACAGCAAATCGC--GCGCCTTCTTATCTTCCGAACCCAT 139475 |||| || ||||||| || | | | ||||| |||| || || ||| || Sbjct 416189 GATCGGGGATCCACAGGGCCAGGAAAAGATCGCGAGCGCGAACT--TCCTCCTTGCCGTG 416132 Query 139476 GTTACGTTTC--ATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATG 139533 ||| || | | || |||||| || || || |||||||||||||| || || |||||| Sbjct 416131 GTT--CTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATG 416074 Query 139534 GCCATTGCGCCTTTCCG---TTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAAT 139590 || | ||||| || ||||| || || || |||| || | | || ||||| Sbjct 416073 GCAAAAGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAG 416014 Query 139591 ACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGG--ATGGGACTGT 139648 ||||| | ||| ||| | ||| | | || |||||||||| ||| ||| | | Sbjct 416013 ACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGC--CGGCAATGTAAGAGC 415956 Query 139649 TGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAA 139708 || |||| | ||| || || | || || || || | | ||||| || | Sbjct 415955 CAGTGGCACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGG 415896 Query 139709 CGCA-ATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGA 139767 | || || | | || ||||| |||||| |||||||| |||| ||| ||||| Sbjct 415895 CACAGGTCTTG-AGGGTGTCGTAGATACCTTCAATGCTGTCATCCTTCATGTCAACCAGG 415837 Query 139768 AAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGC 139827 ||||| ||||| || || | | |||||| || || || |||||| ||||| Sbjct 415836 AAGCAGGACGACAGCTGAGCCTGAGGCGTGCCAGCGTTGAAGAGGGTAGGAGATGCGTGT 415777 Query 139828 GTGAACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCG 139887 ||||| | || | ||||| | | |||||| || ||| | | | ||| | ||| Sbjct 415776 GTGAAGAATTTGCTGGACATGAGGTTGTACGTCTCAATGACACGCTCAACGTTGTCTCCC 415717 Query 139888 TGGATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCG 139947 ||||||||| || || ||||| | ||| || || || ||||| | | ||| || Sbjct 415716 CAGATACCGACGGAAACACGCATAATCATGTGCTGCGGGCGCTCGGCAATCTTGCCGTCA 415657 Query 139948 AtttttttCAGATA--ACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAAT 140005 | || ||||| | || ||| ||||||||| |||||||||| |||||||| | Sbjct 415656 AGCTTGAGGAGATAGGAACG--CTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGAAGT 415599 Query 140006 C 140006 | Sbjct 415598 C 415598 >seq23972 Length=267833 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || ||||| |||||||| ||||| || | ||||| ||| | || Sbjct 225295 ATGCAAATCTTCGTCAAGACGCTCACCGGTAAGACTATCACATTGGAAGTCGAATCATCC 225354 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| || || || |||||||||||| Sbjct 225355 GACACGATCGACAATGTGAAGTCCAAGATCCAAGACAAGGAGGGCATTCCTCCCGATCAA 225414 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||| || || || || ||||| ||||| | | | |||| || || ||| Sbjct 225415 CAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCTGACTACAAC 225474 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || || ||||| | || |||| || || Sbjct 225475 ATCCAGAAGGAGTCGACCCTGCATTTGGTCCTCCGTCTGCGTGGTGG 225521 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| ||||| || || || || || || || || | || Sbjct 225067 ATGCAGATCTTTGTCAAGACGCTGACCGGCAAGACCATCACTCTTGAGGTGGAGTCTTCC 225126 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || |||||||| ||| Sbjct 225127 GACACCATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCAA 225186 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || || ||||| |||||| | | |||| || || ||| Sbjct 225187 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGTACTTTGTCCGACTACAAC 225246 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 ||||| ||||| || || || ||| Sbjct 225247 ATTCAGAAGGAGTCCACTCTTCAC 225270 >seq11113 Length=490148 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || |||||||| ||||| || | ||||| ||| | || Sbjct 77445 ATGCAAATCTTCGTCAAGACACTCACCGGTAAGACTATCACATTGGAAGTCGAATCATCC 77386 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| || || || |||||||| ||| Sbjct 77385 GACACGATCGACAACGTCAAGTCCAAGATCCAAGACAAGGAGGGTATCCCTCCCGACCAA 77326 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||| || || || || ||||| |||||| | | | |||| || || ||| Sbjct 77325 CAGCGCCTGATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACCCTGTCTGACTACAAC 77266 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || || ||||| | || |||| || || Sbjct 77265 ATCCAGAAGGAGTCGACCCTGCATTTGGTCCTCCGTCTGCGTGGTGG 77219 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || || ||||| || || | || Sbjct 77673 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACCATCACTCTCGAGGTTGAGTCTTCC 77614 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || |||||||| ||| Sbjct 77613 GACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCAA 77554 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | |||||||| || || ||||| |||||| | | |||| || || ||| Sbjct 77553 CAGCGCCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGTACTCTGTCCGACTACAAC 77494 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 ||||| ||||| ||||| || ||| Sbjct 77493 ATTCAGAAGGAGTCGACTCTTCAC 77470 >seq26527 Length=223112 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || ||||| || || || || || | || Sbjct 222803 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 222744 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || ||||| ||| Sbjct 222743 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAA 222684 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| || || || ||||| |||||| | | | || || || ||| Sbjct 222683 CAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTTTCCGACTACAAC 222624 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 || || ||||| || || || ||| | ||| | || |||| || || || Sbjct 222623 ATCCAGAAGGAGTCCACCCTGCACCTCGTGCTCCGCCTGCGTGGTGGTGG 222574 >seq22587 Length=423 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || ||||| || || || || || | || Sbjct 86 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 145 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || ||||| ||| Sbjct 146 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAA 205 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||| ||||| || || ||||| |||||| | | | || || || ||| Sbjct 206 CAGCGCCTGATTTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTTTCCGACTACAAC 265 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 || || ||||| || || || ||| | ||| | || |||| || || || Sbjct 266 ATCCAGAAGGAGTCCACCCTGCACCTCGTGCTCCGCCTGCGTGGTGGTGG 315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449739680318680