Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq24749 150 2e-31
seq23972 125 6e-24
seq11113 122 8e-23
seq26527 95.1 1e-14
seq22587 95.1 1e-14
>seq24749
Length=740841
Score = 150 bits (166), Expect = 2e-31
Identities = 1061/1681 (63%), Gaps = 70/1681 (4%)
Strand=Plus/Minus
Query 138358 ATCTCCCACACGGTCTTGTATAGATCACGAAT--ATGTCG-CGGTATTGTTGCA-ATATT 138413
|||||||| || |||||||| || || | | |||| ||| | ||||| || ||
Sbjct 417240 ATCTCCCAGACAGTCTTGTACAGG----GACTTGACGTCGGCGGGAATGTTGGGGATGTT 417185
Query 138414 TTGAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAA 138473
|| ||| || || | |||||||||||||| ||||| ||| | ||| | |
Sbjct 417184 CTGGATGGAACCATTCTCGGCAATGATGCGATTCTTCATGCTATCAGACCAAAGA-CCCA 417126
Query 138474 CTTGATCAAG-TCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTC 138532
| | |||| || || | ||| | ||| | |||||| || || ||||| | || |
Sbjct 417125 TGTCAACAAGATCCTTGAGCAGCCAGGGGTTGACGACCTGGAACTCGCCGGCGAGCACAC 417066
Query 138533 GACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAG 138592
| || ||| |||||| ||| ||||||| || | |||||||| || || ||||| |
Sbjct 417065 GGCGCTGGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCGTTGTTGCCAAGGATCTGCG 417006
Query 138593 CCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGA 138652
|| | || || |||||| |||||| | |||| || || | || || ||||||
Sbjct 417005 AGGTACTGGCCGTGGGCATGGGCGCCACGAGAAGACTGTTACGGACGCCATGTTGCTTGA 416946
Query 138653 TTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGT 138712
| | |||||| | ||||||||| | || |||| || ||||||||| ||||
Sbjct 416945 TCTGGCTCTTGAGGTCGGCCCAGTCCCAAAGGTCAGTAGGCTTGACGTTCCACATGTCGT 416886
Query 138713 ACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTT 138772
| || | || ||| |||| ||| || || | ||| || ||| |
Sbjct 416885 ATTGAAGGATACCCTGGGAGACGGGCGAGCCCTCATAGGTGGAGTAGGGGCCTTCCTCCT 416826
Query 138773 GCGCCAACTCGTTGCTCGCCTCG---AGCGCACCATAGTAAATAGTTTCGGCAATCTGCT 138829
| || | | |||| | | | || ||| | | ||| || || || |||||||
Sbjct 416825 GAGCGAGC---TTGCATGACATGGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCTGCT 416769
Query 138830 GATTGAGCAATCGGGCCTC-GGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCG 138888
|||||| |||||| |||| ||| | ||||||||||| ||| || ||
Sbjct 416768 TGTTGAGCTCCTTGGCCTCAGGCG-ACTCAAAGGGCATGCGGAGAGCAAGGAAAGCATCA 416710
Query 138889 GCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCG-GC 138947
|||| || || || || | || | || |||||||||| || ||| ||||| ||
Sbjct 416709 GCCAAGCCCTGGACACCAAGGCCAATGGGCCGATGGCGCA----TGTTGCTGTTGCGAGC 416654
Query 138948 TTCGAT---AGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTT 139004
||||| || |||| ||| || |||||||| |||| | || | ||||| ||||
Sbjct 416653 CTCGATGACGGGGTAATGGTTCACGTCGATGATCCTGTTGAGGTTCCTGACGACGACCTG 416594
Query 139005 AGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGAC 139064
||| || | | | || || || ||| ||||| || ||| | ||
Sbjct 416593 AGTGACCTGGTGGAGCTTCTTGAAGTCATACACGCCGTTGTTGTAATCAACGTAGGCGGG 416534
Query 139065 AAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTA 139124
| | || | ||||| | |||||| || || || || ||||| | |||
Sbjct 416533 CA-----GGGCCAGA----GAGGCCAGGTTGCAGACGGCAACCTCATCGGGTGCCGAGTA 416483
Query 139125 TTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCT 139184
|||||||| || | |||| || | || ||||| | || | || |||||
Sbjct 416482 CTCGACAATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCT 416423
Query 139185 TTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTC 139244
|| ||||| || ||| ||||| ||||| | || |||| || || || | |||
Sbjct 416422 CTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTC 416363
Query 139245 TATAATGAATTTGAACAAG--TC----CCTAGCTTGTATTTGACGCACGTAAAGTTCGTC 139298
| | | | | ||| || ||| | | || ||| || | | | |
Sbjct 416362 GAGGACGGCGTACCA-AAGCTTCTGCGCCTTGATGGT-CTTGCGGCCCTT----GCCAGC 416309
Query 139299 GCGCTCGTACTTTTCGTAGAGTTCGTCGAA-TCGTTCACCGTAGGCGTCAGAAAGATCGC 139357
||||||||| ||||| | | || || ||| ||||||||| ||||| ||| |
Sbjct 416308 CTTCTCGTACTTCTCGTACAAGGCCTCAAACTCG-TCACCGTAGCAGTCAGCAAGGCCAG 416250
Query 139358 GACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACA 139417
| |||| || || |||||||| | ||| |||||||| || ||| ||| ||||||| |
Sbjct 416249 GGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGA 416190
Query 139418 GATCCGGAATCCACAAAGCGAACAGCAAATCGC--GCGCCTTCTTATCTTCCGAACCCAT 139475
|||| || ||||||| || | | | ||||| |||| || || ||| ||
Sbjct 416189 GATCGGGGATCCACAGGGCCAGGAAAAGATCGCGAGCGCGAACT--TCCTCCTTGCCGTG 416132
Query 139476 GTTACGTTTC--ATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATG 139533
||| || | | || |||||| || || || |||||||||||||| || || ||||||
Sbjct 416131 GTT--CTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATG 416074
Query 139534 GCCATTGCGCCTTTCCG---TTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAAT 139590
|| | ||||| || ||||| || || || |||| || | | || |||||
Sbjct 416073 GCAAAAGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAG 416014
Query 139591 ACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGG--ATGGGACTGT 139648
||||| | ||| ||| | ||| | | || |||||||||| ||| ||| | |
Sbjct 416013 ACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGC--CGGCAATGTAAGAGC 415956
Query 139649 TGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAA 139708
|| |||| | ||| || || | || || || || | | ||||| || |
Sbjct 415955 CAGTGGCACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGG 415896
Query 139709 CGCA-ATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGA 139767
| || || | | || ||||| |||||| |||||||| |||| ||| |||||
Sbjct 415895 CACAGGTCTTG-AGGGTGTCGTAGATACCTTCAATGCTGTCATCCTTCATGTCAACCAGG 415837
Query 139768 AAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGC 139827
||||| ||||| || || | | |||||| || || || |||||| |||||
Sbjct 415836 AAGCAGGACGACAGCTGAGCCTGAGGCGTGCCAGCGTTGAAGAGGGTAGGAGATGCGTGT 415777
Query 139828 GTGAACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCG 139887
||||| | || | ||||| | | |||||| || ||| | | | ||| | |||
Sbjct 415776 GTGAAGAATTTGCTGGACATGAGGTTGTACGTCTCAATGACACGCTCAACGTTGTCTCCC 415717
Query 139888 TGGATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCG 139947
||||||||| || || ||||| | ||| || || || ||||| | | ||| ||
Sbjct 415716 CAGATACCGACGGAAACACGCATAATCATGTGCTGCGGGCGCTCGGCAATCTTGCCGTCA 415657
Query 139948 AtttttttCAGATA--ACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAAT 140005
| || ||||| | || ||| ||||||||| |||||||||| |||||||| |
Sbjct 415656 AGCTTGAGGAGATAGGAACG--CTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGAAGT 415599
Query 140006 C 140006
|
Sbjct 415598 C 415598
>seq23972
Length=267833
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| ||||| | || ||||| |||||||| ||||| || | ||||| ||| | ||
Sbjct 225295 ATGCAAATCTTCGTCAAGACGCTCACCGGTAAGACTATCACATTGGAAGTCGAATCATCC 225354
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||||||||| || || || ||||||||||||
Sbjct 225355 GACACGATCGACAATGTGAAGTCCAAGATCCAAGACAAGGAGGGCATTCCTCCCGATCAA 225414
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || |||| || || || || ||||| ||||| | | | |||| || || |||
Sbjct 225415 CAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCTGACTACAAC 225474
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || ||||| ||||| || || ||||| | || |||| || ||
Sbjct 225475 ATCCAGAAGGAGTCGACCCTGCATTTGGTCCTCCGTCTGCGTGGTGG 225521
Score = 107 bits (118), Expect = 2e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || ||||| ||||| || || || || || || || || | ||
Sbjct 225067 ATGCAGATCTTTGTCAAGACGCTGACCGGCAAGACCATCACTCTTGAGGTGGAGTCTTCC 225126
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||| || ||||| || || || |||||||| |||
Sbjct 225127 GACACCATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCAA 225186
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| | ||||| || || || ||||| |||||| | | |||| || || |||
Sbjct 225187 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGTACTTTGTCCGACTACAAC 225246
Query 24884 ATTCAAAAGGAATCGACACTACAC 24907
||||| ||||| || || || |||
Sbjct 225247 ATTCAGAAGGAGTCCACTCTTCAC 225270
>seq11113
Length=490148
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| ||||| | || || || |||||||| ||||| || | ||||| ||| | ||
Sbjct 77445 ATGCAAATCTTCGTCAAGACACTCACCGGTAAGACTATCACATTGGAAGTCGAATCATCC 77386
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||||||||| || || || |||||||| |||
Sbjct 77385 GACACGATCGACAACGTCAAGTCCAAGATCCAAGACAAGGAGGGTATCCCTCCCGACCAA 77326
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || |||| || || || || ||||| |||||| | | | |||| || || |||
Sbjct 77325 CAGCGCCTGATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACCCTGTCTGACTACAAC 77266
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || ||||| ||||| || || ||||| | || |||| || ||
Sbjct 77265 ATCCAGAAGGAGTCGACCCTGCATTTGGTCCTCCGTCTGCGTGGTGG 77219
Score = 111 bits (122), Expect = 1e-19
Identities = 147/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || || || ||||| || || || || ||||| || || | ||
Sbjct 77673 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACCATCACTCTCGAGGTTGAGTCTTCC 77614
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||| || ||||| || || || |||||||| |||
Sbjct 77613 GACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCAA 77554
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || | |||||||| || || ||||| |||||| | | |||| || || |||
Sbjct 77553 CAGCGCCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGTACTCTGTCCGACTACAAC 77494
Query 24884 ATTCAAAAGGAATCGACACTACAC 24907
||||| ||||| ||||| || |||
Sbjct 77493 ATTCAGAAGGAGTCGACTCTTCAC 77470
>seq26527
Length=223112
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || || || ||||| || || || || || | ||
Sbjct 222803 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 222744
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||| ||||| || || || || ||||| |||
Sbjct 222743 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAA 222684
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || ||||||| || || || ||||| |||||| | | | || || || |||
Sbjct 222683 CAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTTTCCGACTACAAC 222624
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933
|| || ||||| || || || ||| | ||| | || |||| || || ||
Sbjct 222623 ATCCAGAAGGAGTCCACCCTGCACCTCGTGCTCCGCCTGCGTGGTGGTGG 222574
>seq22587
Length=423
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || || || ||||| || || || || || | ||
Sbjct 86 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 145
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||| ||||| || || || || ||||| |||
Sbjct 146 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAA 205
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || |||| ||||| || || ||||| |||||| | | | || || || |||
Sbjct 206 CAGCGCCTGATTTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTTTCCGACTACAAC 265
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933
|| || ||||| || || || ||| | ||| | || |||| || || ||
Sbjct 266 ATCCAGAAGGAGTCCACCCTGCACCTCGTGCTCCGCCTGCGTGGTGGTGG 315
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449739680318680
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