Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq27250 129 5e-25
seq1447 104 2e-17
seq3447 100 2e-16
>seq27250
Length=10371
Score = 129 bits (142), Expect = 5e-25
Identities = 223/324 (69%), Gaps = 0/324 (0%)
Strand=Plus/Minus
Query 34311 GATGAGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACC 34370
||||| || ||||| ||||| | || | | || | ||| ||||||| |||||| ||
Sbjct 5334 GATGACGTCCGTCTCAGGGTTCTTGCACTTCTTGCAAAGCACGAACTTGCTGATGAAGCC 5275
Query 34371 ATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTT 34430
||||| | ||||| | ||| | ||||||| ||||||| ||| | || ||||
Sbjct 5274 GTCAAGGTGATCCTGAAGCTTGGGGCCATCGTGGGCACCGTTGATGATCCAACGATCGTC 5215
Query 34431 TTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAAT 34490
| || | | || || || || |||||| | ||||||||||| | ||||
Sbjct 5214 AGCGGGGTCAATGTTGGTCTGGGCACCGAGCTCGAAACCGAAGTACTTGATGAGGTAGGC 5155
Query 34491 GGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCC 34550
| | || || | || | || ||||| || || |||||| ||||| |||||||||||
Sbjct 5154 GCCGGGGCGGGCCAGAGACTGGGCGACACTGGTCAGGTTGACAATGACGGTCTTGATGCC 5095
Query 34551 GTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTC 34610
|||||||| || || | ||||| || ||| ||| ||||||||||||||| |||
Sbjct 5094 ATTGCCCTTGCCCTCAATCTTGGTCTGGAGACGCTCCATCTTGTAGCGGTAGAACTGGTC 5035
Query 34611 CGCCACATTGCGGTTAACGTTCAC 34634
|| |||| ||| |||||| ||
Sbjct 5034 GGCGACATCGCGACGAACGTTGAC 5011
>seq1447
Length=194970
Score = 104 bits (114), Expect = 2e-17
Identities = 134/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 34450 TGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCAAGCGCC 34509
|| || || |||||| | ||||||||||| | |||| | | || || | || | |
Sbjct 144971 TGGGCACCGAGCTCGAAACCGAAGTACTTGATGAGGTAGGCGCCGGGGCGGGCCAGAGAC 144912
Query 34510 TTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCGACC 34569
| ||||| || || |||||| ||||| ||||||||||| |||||||| || || | |
Sbjct 144911 TGGGCGACACTGGTCAGGTTGACAATGACGGTCTTGATGCCATTGCCCTTGCCCTCAATC 144852
Query 34570 TTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTGCGGTTAACG 34629
|||| || |||| ||| ||||||||||||||| ||| || |||| ||| ||||
Sbjct 144851 TTGGTCTGGAGGCGCTCCATCTTGTAGCGGTAGAACTGGTCGGCGACATCGCGACGAACG 144792
Query 34630 TTCAC 34634
|| ||
Sbjct 144791 TTGAC 144787
>seq3447
Length=175797
Score = 100 bits (110), Expect = 2e-16
Identities = 135/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 34447 GTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCAAGC 34506
|| || || || |||||| | ||||||||||| | |||| | | || || | ||
Sbjct 60927 GTCTGGGCACCGAGCTCGAAACCGAAGTACTTGATGAGGTAGGCGCCGGGGCGGGCCAGA 60868
Query 34507 GCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCG 34566
| || ||||| || || |||||| ||||| ||||||||||| |||||||| || ||
Sbjct 60867 GACTGGGCGACACTGGTCAGGTTGACAATGACGGTCTTGATGCCATTGCCCTTGCCCTCA 60808
Query 34567 ACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTGCGGTTA 34626
| ||||| || ||| ||| ||||||||||||||| ||| || |||| ||| |
Sbjct 60807 ATCTTGGTCTGGAGACGCTCCATCTTGTAGCGGTAGAACTGGTCGGCGACATCGCGACGA 60748
Query 34627 ACGTTCAC 34634
||||| ||
Sbjct 60747 ACGTTGAC 60740
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412700310251933
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |