Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq27250 129 5e-25 seq1447 104 2e-17 seq3447 100 2e-16 >seq27250 Length=10371 Score = 129 bits (142), Expect = 5e-25 Identities = 223/324 (69%), Gaps = 0/324 (0%) Strand=Plus/Minus Query 34311 GATGAGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACC 34370 ||||| || ||||| ||||| | || | | || | ||| ||||||| |||||| || Sbjct 5334 GATGACGTCCGTCTCAGGGTTCTTGCACTTCTTGCAAAGCACGAACTTGCTGATGAAGCC 5275 Query 34371 ATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTT 34430 ||||| | ||||| | ||| | ||||||| ||||||| ||| | || |||| Sbjct 5274 GTCAAGGTGATCCTGAAGCTTGGGGCCATCGTGGGCACCGTTGATGATCCAACGATCGTC 5215 Query 34431 TTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAAT 34490 | || | | || || || || |||||| | ||||||||||| | |||| Sbjct 5214 AGCGGGGTCAATGTTGGTCTGGGCACCGAGCTCGAAACCGAAGTACTTGATGAGGTAGGC 5155 Query 34491 GGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCC 34550 | | || || | || | || ||||| || || |||||| ||||| ||||||||||| Sbjct 5154 GCCGGGGCGGGCCAGAGACTGGGCGACACTGGTCAGGTTGACAATGACGGTCTTGATGCC 5095 Query 34551 GTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTC 34610 |||||||| || || | ||||| || ||| ||| ||||||||||||||| ||| Sbjct 5094 ATTGCCCTTGCCCTCAATCTTGGTCTGGAGACGCTCCATCTTGTAGCGGTAGAACTGGTC 5035 Query 34611 CGCCACATTGCGGTTAACGTTCAC 34634 || |||| ||| |||||| || Sbjct 5034 GGCGACATCGCGACGAACGTTGAC 5011 >seq1447 Length=194970 Score = 104 bits (114), Expect = 2e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 34450 TGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCAAGCGCC 34509 || || || |||||| | ||||||||||| | |||| | | || || | || | | Sbjct 144971 TGGGCACCGAGCTCGAAACCGAAGTACTTGATGAGGTAGGCGCCGGGGCGGGCCAGAGAC 144912 Query 34510 TTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCGACC 34569 | ||||| || || |||||| ||||| ||||||||||| |||||||| || || | | Sbjct 144911 TGGGCGACACTGGTCAGGTTGACAATGACGGTCTTGATGCCATTGCCCTTGCCCTCAATC 144852 Query 34570 TTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTGCGGTTAACG 34629 |||| || |||| ||| ||||||||||||||| ||| || |||| ||| |||| Sbjct 144851 TTGGTCTGGAGGCGCTCCATCTTGTAGCGGTAGAACTGGTCGGCGACATCGCGACGAACG 144792 Query 34630 TTCAC 34634 || || Sbjct 144791 TTGAC 144787 >seq3447 Length=175797 Score = 100 bits (110), Expect = 2e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 34447 GTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCAAGC 34506 || || || || |||||| | ||||||||||| | |||| | | || || | || Sbjct 60927 GTCTGGGCACCGAGCTCGAAACCGAAGTACTTGATGAGGTAGGCGCCGGGGCGGGCCAGA 60868 Query 34507 GCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCG 34566 | || ||||| || || |||||| ||||| ||||||||||| |||||||| || || Sbjct 60867 GACTGGGCGACACTGGTCAGGTTGACAATGACGGTCTTGATGCCATTGCCCTTGCCCTCA 60808 Query 34567 ACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTGCGGTTA 34626 | ||||| || ||| ||| ||||||||||||||| ||| || |||| ||| | Sbjct 60807 ATCTTGGTCTGGAGACGCTCCATCTTGTAGCGGTAGAACTGGTCGGCGACATCGCGACGA 60748 Query 34627 ACGTTCAC 34634 ||||| || Sbjct 60747 ACGTTGAC 60740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412700310251933