Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq26527 127 1e-24 seq22587 118 7e-22 seq23972 113 3e-20 seq11113 104 2e-17 seq1002 96.9 2e-15 seq20756 91.5 1e-13 >seq26527 Length=223112 Score = 127 bits (140), Expect = 1e-24 Identities = 161/219 (74%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||| | |||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 222592 AGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCC 222651 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || ||||||||||| || || ||||| | || | ||||||||||| Sbjct 222652 TCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCC 222711 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || | ||| || |||| ||| || Sbjct 222712 TGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGAT 222767 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 ||||| |||||||||||||| || |||||||||||||| Sbjct 222768 AGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGAT 222806 >seq22587 Length=423 Score = 118 bits (130), Expect = 7e-22 Identities = 159/219 (73%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||| | |||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 297 AGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCC 238 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || || ||||| || || ||||| | || | ||||||||||| Sbjct 237 TCAAGCTGCTTGCCAGCAAAAATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCC 178 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || | ||| || |||| ||| || Sbjct 177 TGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGAT 122 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 ||||| |||||||||||||| || |||||||||||||| Sbjct 121 AGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGAT 83 >seq23972 Length=267833 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| ||||||||||||||| ||||| || | | || |||| Sbjct 225278 AGAACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGACCATCC 225219 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| |||||||| || || || ||||| | || | ||||||||||| Sbjct 225218 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCCTCCTTGTCC 225159 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||| || |||| || |||||| Sbjct 225158 TGAATCTTCGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGAGTGATGGTC 225099 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || ||||| |||||||||||||| Sbjct 225098 TTGCCGGTCAGCGTCTTGACAAAGATCTGCAT 225067 Score = 100 bits (110), Expect = 2e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | ||| ||||||||| ||||| ||||| || ||| |||| |||| Sbjct 225050 AGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCC 224991 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || ||||| ||||| || || ||||| | || | ||||||||||| Sbjct 224990 TCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCC 224931 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | || || |||||| |||| ||| |||||| Sbjct 224930 TGGATCTTCGACTTAACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTC 224871 Query 34946 TTTCCCGTGA 34955 || || |||| Sbjct 224870 TTGCCGGTGA 224861 >seq11113 Length=490148 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| || | ||| ||||||||| ||||| ||||| || ||| |||| |||| Sbjct 77234 AGGACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCC 77293 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || ||||| ||||| || || ||||| | || | ||||||||||| Sbjct 77294 TCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCT 77353 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | |||| || | ||||| || | || || ||| Sbjct 77354 TGGATCTTGGACTTGACGTTGTCGATCGTGTCGGATGATTCGACTTCCAATGTGATAGTC 77413 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||| ||||| || ||||| ||||| Sbjct 77414 TTACCGGTGAGTGTCTTGACGAAGATTTGCAT 77445 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| || ||||||||||||||| ||||| || || | || |||| Sbjct 77462 AGAACGAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCC 77521 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| || ||||| || || || ||||| | || | ||||||||||| Sbjct 77522 TCAAGCTGCTTTCCAGCAAAGATGAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCC 77581 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||| || || | || |||||| Sbjct 77582 TGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTC 77641 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || ||||| |||||||||||||| Sbjct 77642 TTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 77673 >seq1002 Length=198801 Score = 96.9 bits (106), Expect = 2e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| || || |||| |||| || || ||||| |||||||| | Sbjct 112545 CCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAA 112604 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| || || ||||| | || | ||||||||||| | || || ||||| Sbjct 112605 TCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 112664 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | || | || || ||| || |||| ||| |||||||| ||||| |||||||| || | Sbjct 112665 CAATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGA 112724 Query 34968 A 34968 | Sbjct 112725 A 112725 Score = 93.3 bits (102), Expect = 3e-14 Identities = 133/185 (72%), Gaps = 8/185 (4%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| || | |||| |||| || || ||||| |||||||| | Sbjct 118101 CCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAA 118160 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| || || ||||| | || | ||||||||||| | || || ||||| || Sbjct 118161 TCAGGCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGAC--AT- 118217 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | ||||| || || ||| || |||| ||| |||||||| ||||| |||||||| Sbjct 118218 -TGTCGATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTG 118276 Query 34964 ACAAA 34968 || || Sbjct 118277 ACGAA 118281 >seq20756 Length=5129 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| || ||| |||| |||| || || ||||| || ||||| Sbjct 4899 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAA 4958 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| || || ||||| | || | ||||||||||| | || || || ||| Sbjct 4959 AATCAGGCGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTAACGTT 5018 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGA 34955 | || | || || |||||| |||| ||| |||||||| || |||| Sbjct 5019 GTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGA 5068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325581335812139