Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq23972 87.8 1e-12
seq22587 84.2 1e-11
>seq23972
Length=267833
Score = 87.8 bits (96), Expect = 1e-12
Identities = 144/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606
|| |||||| ||| || || |||||||| ||||| | || || | || || | ||
Sbjct 225269 TGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGACCATCCTCAAGCTGC 225210
Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666
||||| || || || | |||||| || || | || | ||| || ||||| ||| |||
Sbjct 225209 TTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTC 225150
Query 33667 TGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725
|| | | | |||| ||||||| || ||||| |||| ||||| || || || ||
Sbjct 225149 GACTTGA-CGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGAGTGATGGTCTTGCCGGT 225091
Query 33726 TAACGTTTTTACAAAGATCTGCATA 33750
| ||| || |||||||||||||||
Sbjct 225090 CAGCGTCTTGACAAAGATCTGCATA 225066
>seq22587
Length=423
Score = 84.2 bits (92), Expect = 1e-11
Identities = 158/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
||||||| | || || | ||| | || || ||| ||| || || |||||||| ||||
Sbjct 314 CACCACCACGCAGGCGGAGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 255
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
| || ||||| | || || | || || || |||||||||| ||||| || || | |
Sbjct 254 AAAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATCAGGCGCTGTTGGTCGGGGG 195
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699
| | || || ||||| || || || | ||| ||| | ||||||| || |||
Sbjct 194 GGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CATTGTCGATGGTGTCGGACGACTCC 136
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| |||| ||||| || || || || | || || || |||||||||||
Sbjct 135 ACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 86
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328591505267520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |