Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq23972 116 9e-21
seq11113 105 2e-17
>seq23972
Length=267833
Score = 116 bits (128), Expect = 9e-21
Identities = 150/207 (72%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||| ||||| || || || || |||||| | || ||||| ||| |||
Sbjct 225070 CAGATCTTTGTCAAGACGCTGACCGGCAAGACCATCACTCTTGAGGTGGAGTCTTCCGAC 225129
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | || || ||| |||||||| || || || || ||| || ||| ||
Sbjct 225130 ACCATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCAACAG 225189
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| || |||||||| ||||||||| | || ||||| | |||||| |||| |||||| |
Sbjct 225190 CGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGTACTTTGTCCGACTACAACATT 225249
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379
||||| ||||| ||||||||||| |||
Sbjct 225250 CAGAAGGAGTCCACTCTTCACCTCGTT 225276
Score = 87.8 bits (96), Expect = 4e-12
Identities = 75/93 (81%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822
||| ||||||||||| ||||| ||||| | || ||||| | |||||| | ||||| ||
Sbjct 225276 AACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGACCATCCTC 225217
Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855
||||||||||| |||||||| || || |||||
Sbjct 225216 AAGCTGCTTTCCAGCGAAGATGAGACGCTGTTG 225184
>seq11113
Length=490148
Score = 105 bits (116), Expect = 2e-17
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||| || || || || || || |||||| | || || || ||| |||
Sbjct 77670 CAGATCTTTGTCAAGACTCTGACCGGCAAGACCATCACTCTCGAGGTTGAGTCTTCCGAC 77611
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| |||||||| || || || || ||| || ||| ||
Sbjct 77610 ACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCAACAG 77551
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| || ||||| || ||||||||| | || ||||| | ||| || |||| |||||| |
Sbjct 77550 CGCCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGTACTCTGTCCGACTACAACATT 77491
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
||||| ||||| ||||||||||| ||| | | |||||
Sbjct 77490 CAGAAGGAGTCGACTCTTCACCTCGTTCTCCGCCTTCG 77453
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181395595279601
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |