Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq24749 159 3e-34
seq27938 123 2e-23
>seq24749
Length=740841
Score = 159 bits (176), Expect = 3e-34
Identities = 759/1183 (64%), Gaps = 51/1183 (4%)
Strand=Plus/Minus
Query 147253 GGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGA 147312
||||| || ||| | || ||||| ||||| ||||||| ||| | ||| || || |||
Sbjct 416736 GGCATGCGGAGAGCAAGGAAAGCATCAGCCAAGCCCTGGACACCAAGGCCAATGGGCCGA 416677
Query 147313 TGCTTTTCGTTGCTGCGCTTCGCGC-TCGCT-ATGGGATAGTGGTTGCGATCAATAATCT 147370
|| ||||||| | || || ||| | | ||| || ||||| || || |||
Sbjct 416676 TGGCGCATGTTGCTGT--TGCGAGCCTCGATGACGGGGTAATGGTTCACGTCGATGATCC 416619
Query 147371 TGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCC 147430
|||||||||| | || || || | ||| | | ||| |||| ||| ||||| |
Sbjct 416618 TGTTGAGGTTCCTGACGACGACCTGAGTGACCTGGTGGAGCTTCTTGAAGTCATACACGC 416559
Query 147431 CGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCT 147490
||| | | | ||| | | || ||| | ||| ||||| ||||||||||| ||
Sbjct 416558 CGTTGTTGTAATCAACGTAGGCGGGCAGGGCCAGAGAGGCCAGGTTGCAGACGGCAACCT 416499
Query 147491 CTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCA 147550
| |||| | ||||| || || || | |||||||||| || ||| || |
Sbjct 416498 CATCGGGTGCCGAGTACTCGACAATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAA 416439
Query 147551 AATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGG 147610
|| | ||| ||||| || || ||||| || ||| |||||||| | || |||||
Sbjct 416438 GGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGG 416379
Query 147611 TCTCGACTTGCGTTTCAACGATAA---ACCTATGCAGGTCCTGCGCTCGCACCCGCTGCC 147667
||||| || | || | || ||| | || | |||||| | | ||
Sbjct 416378 TCTCGGTCTGAGCCTCGAGGACGGCGTACCAAAGC---TTCTGCGC-----CTTGATGGT 416327
Query 147668 GATAGCGGCCCTCG------TTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGT 147721
| |||||||| | || |||||| ||||||||| |||||||||||| ||||
Sbjct 416326 CTT-GCGGCCCTTGCCAGCCTTCTCGTACTTCTCGTACAAGGCCTCAAACTCGTCACCGT 416268
Query 147722 AGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGT 147781
|||| || |||||||| || |||| | || ||||| || | ||| | ||| | |
Sbjct 416267 AGCAGTCAGCAAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCT 416208
Query 147782 TAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCT---- 147837
|| || ||| || ||||| || | |||||| || | ||||||||| ||
Sbjct 416207 CGACACGCTTCATGAAGAGATCGGGGATCCACAGGGCCAGGAAAAGATCGCGAGCGCGAA 416148
Query 147838 -TTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCA-CGCTATAGATGTCGGCGT 147895
|| | |||| | || | ||||| | | ||| | | | | ||| || ||||
Sbjct 416147 CTTCC--TCCTTGCCGTGGTTCTTGCGG---AGGTCAAGGAACTCGA-AGACATCAGCGT 416094
Query 147896 GCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---CCGCCCTGGTCGACAT 147952
|||| || |||| ||||| ||| | || || |||||| ||||||||||| || |
Sbjct 416093 GCCATGGCTCAAGGTAGATGGCAAAAGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGT 416034
Query 147953 GGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGG 148012
|||| || ||||||| || ||||| | |||||| | |||| | | |||||||||||
Sbjct 416033 AGCGCGCCGTGTTGTTGAAGACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGG 415974
Query 148013 TGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCG-TGCACGTTAACGCCAATGCCGCC- 148070
|| || | ||| ||| || | | || || ||||| | ||||| || ||
Sbjct 415973 TGCCGGCAATGTAAGAGCCAGTGGCACGGA-TGCGATGGACGTTCAGACCAATACCACCA 415915
Query 148071 GCCGTACTTTGATATGGCAGCGCAATCGCC--CAATGTCGTGTAGATGCCGTCGATGCTG 148128
||| | ||| || || || ||| | | | || |||||| || || ||||||
Sbjct 415914 GCCAT-CTTGGAGAT--CATGGCACAGGTCTTGAGGGTGTCGTAGATACCTTCAATGCTG 415858
Query 148129 TCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAG 148188
|| | || | | ||| || || || || ||| || | |||| || || |
Sbjct 415857 TCATCCTTCATGTCAACCAGGAAGCAGGACGACAGCTGAGCCTGAGGCGTGCCAGCGTTG 415798
Query 148189 AAAAGGGTGGGACTCGCGTGCGTAAACAATTT--TTGACTCATCATGCGATACGTCTCAA 148246
|| ||||| ||| ||||| || || ||||| | || ||| | | ||||||||||
Sbjct 415797 AAGAGGGTAGGAGATGCGTGTGTGAAGAATTTGCTGGA--CATGAGGTTGTACGTCTCAA 415740
Query 148247 TAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTG 148306
| | || | || ||| || || || | | || ||||| | ||||||||| |
Sbjct 415739 TGACACGCTCAACGTTGTCTCCCCAGATACCGACGGAAACACGCATAATCATGTGCTGCG 415680
Query 148307 GTCGTTCGGCAA-CTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAA 148365
| || ||||||| |||| || | |||||| ||||| | || ||||| ||| |
Sbjct 415679 GGCGCTCGGCAATCTTG-CCGTCAAGCTTGAGGAGATAGGAACGCTCCAGGGTCTTGAAG 415621
Query 148366 CCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408
|||||||| | ||| | || || | ||||| | |||||||
Sbjct 415620 CCAAAGTATTGGTAGTTGAAGTCACGGTCGTAGACAATGGCCG 415578
>seq27938
Length=10276
Score = 123 bits (136), Expect = 2e-23
Identities = 378/577 (66%), Gaps = 33/577 (6%)
Strand=Plus/Plus
Query 147456 CACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGAT 147515
|| ||| | ||| ||||| ||||||||||| ||| |||| | ||||| || ||
Sbjct 9602 CAGGGCCAGAGAGGCCAGGTTGCAGACGGCAACCTCATCGGGTGCCGAGTACTCGACAAT 9661
Query 147516 TTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATT 147575
|| | |||||||||| || ||| || | || | ||| ||||| || || ||
Sbjct 9662 CTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTT 9721
Query 147576 GCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAA- 147634
||| || ||| |||||||| | || |||||||||| || | || | ||
Sbjct 9722 GCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGACGGC 9781
Query 147635 --ACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCG------TTTTC 147686
||| | || | |||||| | | || | |||||||| | || ||
Sbjct 9782 GTACCAAAGC---TTCTGCGC-----CTTGATGGTCTT-GCGGCCCTTGCCAGCCTTCTC 9832
Query 147687 GTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTG 147746
|||| ||||||||| |||||||||||| |||||||| || |||||||| || ||||
Sbjct 9833 GTACTTCTCGTACAAGGCCTCAAACTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCACTC 9892
Query 147747 ATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGG 147806
| || ||||| || | ||| | ||| | | || || ||| || ||||| ||
Sbjct 9893 GTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCGGG 9952
Query 147807 CACCCACAGCGCGTACATAAGATCGCGCGCT-----TTGCAATCCTCGGCGCCCATGTTG 147861
| |||||| || | ||||||||| || || | |||| | || | |||
Sbjct 9953 GATCCACAGGGCCAGGAAAAGATCGCGAGCGCGAACTTCC--TCCTTGCCGTGGTTCTTG 10010
Query 147862 CGTTTCAAATTAAGCA-CGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAG 147920
|| | | ||| | | | | ||| || |||||||| || |||| ||||| ||| |
Sbjct 10011 CGG---AGGTCAAGGAACTCGA-AGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAA 10066
Query 147921 CGCACCTTTACGCTTT---CCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCG 147977
|| || |||||| ||||||||||| || | |||| || ||||||| || |||||
Sbjct 10067 AGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAGACGCG 10126
Query 147978 CACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTG 148014
| |||||| | |||| | | |||||||||||||
Sbjct 10127 AAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTG 10163
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476443903511160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |