Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq24749 159 3e-34 seq27938 123 2e-23 >seq24749 Length=740841 Score = 159 bits (176), Expect = 3e-34 Identities = 759/1183 (64%), Gaps = 51/1183 (4%) Strand=Plus/Minus Query 147253 GGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGA 147312 ||||| || ||| | || ||||| ||||| ||||||| ||| | ||| || || ||| Sbjct 416736 GGCATGCGGAGAGCAAGGAAAGCATCAGCCAAGCCCTGGACACCAAGGCCAATGGGCCGA 416677 Query 147313 TGCTTTTCGTTGCTGCGCTTCGCGC-TCGCT-ATGGGATAGTGGTTGCGATCAATAATCT 147370 || ||||||| | || || ||| | | ||| || ||||| || || ||| Sbjct 416676 TGGCGCATGTTGCTGT--TGCGAGCCTCGATGACGGGGTAATGGTTCACGTCGATGATCC 416619 Query 147371 TGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCC 147430 |||||||||| | || || || | ||| | | ||| |||| ||| ||||| | Sbjct 416618 TGTTGAGGTTCCTGACGACGACCTGAGTGACCTGGTGGAGCTTCTTGAAGTCATACACGC 416559 Query 147431 CGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCT 147490 ||| | | | ||| | | || ||| | ||| ||||| ||||||||||| || Sbjct 416558 CGTTGTTGTAATCAACGTAGGCGGGCAGGGCCAGAGAGGCCAGGTTGCAGACGGCAACCT 416499 Query 147491 CTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCA 147550 | |||| | ||||| || || || | |||||||||| || ||| || | Sbjct 416498 CATCGGGTGCCGAGTACTCGACAATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAA 416439 Query 147551 AATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGG 147610 || | ||| ||||| || || ||||| || ||| |||||||| | || ||||| Sbjct 416438 GGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGG 416379 Query 147611 TCTCGACTTGCGTTTCAACGATAA---ACCTATGCAGGTCCTGCGCTCGCACCCGCTGCC 147667 ||||| || | || | || ||| | || | |||||| | | || Sbjct 416378 TCTCGGTCTGAGCCTCGAGGACGGCGTACCAAAGC---TTCTGCGC-----CTTGATGGT 416327 Query 147668 GATAGCGGCCCTCG------TTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGT 147721 | |||||||| | || |||||| ||||||||| |||||||||||| |||| Sbjct 416326 CTT-GCGGCCCTTGCCAGCCTTCTCGTACTTCTCGTACAAGGCCTCAAACTCGTCACCGT 416268 Query 147722 AGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGT 147781 |||| || |||||||| || |||| | || ||||| || | ||| | ||| | | Sbjct 416267 AGCAGTCAGCAAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCT 416208 Query 147782 TAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCT---- 147837 || || ||| || ||||| || | |||||| || | ||||||||| || Sbjct 416207 CGACACGCTTCATGAAGAGATCGGGGATCCACAGGGCCAGGAAAAGATCGCGAGCGCGAA 416148 Query 147838 -TTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCA-CGCTATAGATGTCGGCGT 147895 || | |||| | || | ||||| | | ||| | | | | ||| || |||| Sbjct 416147 CTTCC--TCCTTGCCGTGGTTCTTGCGG---AGGTCAAGGAACTCGA-AGACATCAGCGT 416094 Query 147896 GCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---CCGCCCTGGTCGACAT 147952 |||| || |||| ||||| ||| | || || |||||| ||||||||||| || | Sbjct 416093 GCCATGGCTCAAGGTAGATGGCAAAAGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGT 416034 Query 147953 GGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGG 148012 |||| || ||||||| || ||||| | |||||| | |||| | | ||||||||||| Sbjct 416033 AGCGCGCCGTGTTGTTGAAGACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGG 415974 Query 148013 TGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCG-TGCACGTTAACGCCAATGCCGCC- 148070 || || | ||| ||| || | | || || ||||| | ||||| || || Sbjct 415973 TGCCGGCAATGTAAGAGCCAGTGGCACGGA-TGCGATGGACGTTCAGACCAATACCACCA 415915 Query 148071 GCCGTACTTTGATATGGCAGCGCAATCGCC--CAATGTCGTGTAGATGCCGTCGATGCTG 148128 ||| | ||| || || || ||| | | | || |||||| || || |||||| Sbjct 415914 GCCAT-CTTGGAGAT--CATGGCACAGGTCTTGAGGGTGTCGTAGATACCTTCAATGCTG 415858 Query 148129 TCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAG 148188 || | || | | ||| || || || || ||| || | |||| || || | Sbjct 415857 TCATCCTTCATGTCAACCAGGAAGCAGGACGACAGCTGAGCCTGAGGCGTGCCAGCGTTG 415798 Query 148189 AAAAGGGTGGGACTCGCGTGCGTAAACAATTT--TTGACTCATCATGCGATACGTCTCAA 148246 || ||||| ||| ||||| || || ||||| | || ||| | | |||||||||| Sbjct 415797 AAGAGGGTAGGAGATGCGTGTGTGAAGAATTTGCTGGA--CATGAGGTTGTACGTCTCAA 415740 Query 148247 TAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTG 148306 | | || | || ||| || || || | | || ||||| | ||||||||| | Sbjct 415739 TGACACGCTCAACGTTGTCTCCCCAGATACCGACGGAAACACGCATAATCATGTGCTGCG 415680 Query 148307 GTCGTTCGGCAA-CTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAA 148365 | || ||||||| |||| || | |||||| ||||| | || ||||| ||| | Sbjct 415679 GGCGCTCGGCAATCTTG-CCGTCAAGCTTGAGGAGATAGGAACGCTCCAGGGTCTTGAAG 415621 Query 148366 CCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 |||||||| | ||| | || || | ||||| | ||||||| Sbjct 415620 CCAAAGTATTGGTAGTTGAAGTCACGGTCGTAGACAATGGCCG 415578 >seq27938 Length=10276 Score = 123 bits (136), Expect = 2e-23 Identities = 378/577 (66%), Gaps = 33/577 (6%) Strand=Plus/Plus Query 147456 CACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGAT 147515 || ||| | ||| ||||| ||||||||||| ||| |||| | ||||| || || Sbjct 9602 CAGGGCCAGAGAGGCCAGGTTGCAGACGGCAACCTCATCGGGTGCCGAGTACTCGACAAT 9661 Query 147516 TTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATT 147575 || | |||||||||| || ||| || | || | ||| ||||| || || || Sbjct 9662 CTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTT 9721 Query 147576 GCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAA- 147634 ||| || ||| |||||||| | || |||||||||| || | || | || Sbjct 9722 GCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGACGGC 9781 Query 147635 --ACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCG------TTTTC 147686 ||| | || | |||||| | | || | |||||||| | || || Sbjct 9782 GTACCAAAGC---TTCTGCGC-----CTTGATGGTCTT-GCGGCCCTTGCCAGCCTTCTC 9832 Query 147687 GTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTG 147746 |||| ||||||||| |||||||||||| |||||||| || |||||||| || |||| Sbjct 9833 GTACTTCTCGTACAAGGCCTCAAACTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCACTC 9892 Query 147747 ATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGG 147806 | || ||||| || | ||| | ||| | | || || ||| || ||||| || Sbjct 9893 GTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCGGG 9952 Query 147807 CACCCACAGCGCGTACATAAGATCGCGCGCT-----TTGCAATCCTCGGCGCCCATGTTG 147861 | |||||| || | ||||||||| || || | |||| | || | ||| Sbjct 9953 GATCCACAGGGCCAGGAAAAGATCGCGAGCGCGAACTTCC--TCCTTGCCGTGGTTCTTG 10010 Query 147862 CGTTTCAAATTAAGCA-CGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAG 147920 || | | ||| | | | | ||| || |||||||| || |||| ||||| ||| | Sbjct 10011 CGG---AGGTCAAGGAACTCGA-AGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAA 10066 Query 147921 CGCACCTTTACGCTTT---CCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCG 147977 || || |||||| ||||||||||| || | |||| || ||||||| || ||||| Sbjct 10067 AGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAGACGCG 10126 Query 147978 CACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTG 148014 | |||||| | |||| | | ||||||||||||| Sbjct 10127 AAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTG 10163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476443903511160