Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq23861 109 6e-19 >seq23861 Length=270256 Score = 109 bits (120), Expect = 6e-19 Identities = 203/290 (70%), Gaps = 6/290 (2%) Strand=Plus/Plus Query 147106 ACGTAAAACTG-GCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGG 147164 |||||||| || ||| | |||||||| |||||||||||||| ||||| ||| || Sbjct 163357 ACGTAAAATTGAGCAAAC-ATGTGGCAGGGCGGCAGCGCCATCTTCTTCAGGTGCGCCGG 163415 Query 147165 GTTCCAGGCCGAGACCACCAGCCGCCTGCTC-TCGGGGTTCCTCTTAATCTCTTCGATAA 147223 |||||| || || | | |||| | || | || || |||| | || | || || Sbjct 163416 GTTCCATGCGCTGAGGATGATGCGCC-GATCGTACGGATTGGTCTTGAGCTTGTGGACAA 163474 Query 147224 CCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCC-CGCAGTCCACGTACCTG 147282 | ||||||||| || || || ||| ||||| ||| |||| || |||||| | Sbjct 163475 TCTCTGCCAGCTGGTCGACACCTTGACCCGTGTAGTCCGTCTTCGCA-TCAACGTACTCG 163533 Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 || || ||||||| ||| ||||||||||| || || || |||||||| | | ||| Sbjct 163534 GCACCGAAGTGCCGCCATTGGAAGCCGTAGACGGGACCGAGGTCGCCTACTTCGCGGTGT 163593 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGAT 147392 |||| ||| | | | ||| |||||| | || |||| | |||||||||| Sbjct 163594 GAGAGTCCCACGCTGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGAT 163643 Score = 105 bits (116), Expect = 8e-18 Identities = 202/290 (70%), Gaps = 6/290 (2%) Strand=Plus/Plus Query 147106 ACGTAAAACTG-GCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGG 147164 ||||||||||| ||| | |||||||| |||||||||||||| ||||| ||| || Sbjct 129636 ACGTAAAACTGAGCAAAC-ATGTGGCAGGGCGGCAGCGCCATCTTCTTCAGGTGCGCCGG 129694 Query 147165 GTTCCAGGCCGAGACCACCAGCCGCCTGCTC-TCGGGGTTCCTCTTAATCTCTTCGATAA 147223 |||||| || || | | |||| | || | || || |||| | || | || || Sbjct 129695 GTTCCATGCGCTGAGGATGATGCGCC-GATCGTACGGATTGGTCTTGAGCTTGTGGACAA 129753 Query 147224 CCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCC-CGCAGTCCACGTACCTG 147282 | ||||||||| || || || ||| ||||| ||| |||| || || ||| Sbjct 129754 TCTCTGCCAGCTGGTCGACACCTTGTCCCGTGTAGTCCGTCGTCGCA-TCAACATACTCA 129812 Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 || || ||||||| ||| ||||||||||| || || || |||||||| | | ||| Sbjct 129813 GCACCGAAGTGCCGCCATTGGAAGCCGTAGACGGGACCGAGGTCGCCTACTTCGCGGTGT 129872 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGAT 147392 |||| ||| | | | ||| |||||| | || |||| | |||||||||| Sbjct 129873 GAGAGTCCCACGCTGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGAT 129922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583283188418400