Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_026421.1
Length=182380
Score E
Sequences producing significant alignments: (Bits) Value
seq23861 109 6e-19
>seq23861
Length=270256
Score = 109 bits (120), Expect = 6e-19
Identities = 203/290 (70%), Gaps = 6/290 (2%)
Strand=Plus/Plus
Query 147106 ACGTAAAACTG-GCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGG 147164
|||||||| || ||| | |||||||| |||||||||||||| ||||| ||| ||
Sbjct 163357 ACGTAAAATTGAGCAAAC-ATGTGGCAGGGCGGCAGCGCCATCTTCTTCAGGTGCGCCGG 163415
Query 147165 GTTCCAGGCCGAGACCACCAGCCGCCTGCTC-TCGGGGTTCCTCTTAATCTCTTCGATAA 147223
|||||| || || | | |||| | || | || || |||| | || | || ||
Sbjct 163416 GTTCCATGCGCTGAGGATGATGCGCC-GATCGTACGGATTGGTCTTGAGCTTGTGGACAA 163474
Query 147224 CCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCC-CGCAGTCCACGTACCTG 147282
| ||||||||| || || || ||| ||||| ||| |||| || |||||| |
Sbjct 163475 TCTCTGCCAGCTGGTCGACACCTTGACCCGTGTAGTCCGTCTTCGCA-TCAACGTACTCG 163533
Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342
|| || ||||||| ||| ||||||||||| || || || |||||||| | | |||
Sbjct 163534 GCACCGAAGTGCCGCCATTGGAAGCCGTAGACGGGACCGAGGTCGCCTACTTCGCGGTGT 163593
Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGAT 147392
|||| ||| | | | ||| |||||| | || |||| | ||||||||||
Sbjct 163594 GAGAGTCCCACGCTGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGAT 163643
Score = 105 bits (116), Expect = 8e-18
Identities = 202/290 (70%), Gaps = 6/290 (2%)
Strand=Plus/Plus
Query 147106 ACGTAAAACTG-GCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGG 147164
||||||||||| ||| | |||||||| |||||||||||||| ||||| ||| ||
Sbjct 129636 ACGTAAAACTGAGCAAAC-ATGTGGCAGGGCGGCAGCGCCATCTTCTTCAGGTGCGCCGG 129694
Query 147165 GTTCCAGGCCGAGACCACCAGCCGCCTGCTC-TCGGGGTTCCTCTTAATCTCTTCGATAA 147223
|||||| || || | | |||| | || | || || |||| | || | || ||
Sbjct 129695 GTTCCATGCGCTGAGGATGATGCGCC-GATCGTACGGATTGGTCTTGAGCTTGTGGACAA 129753
Query 147224 CCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCC-CGCAGTCCACGTACCTG 147282
| ||||||||| || || || ||| ||||| ||| |||| || || |||
Sbjct 129754 TCTCTGCCAGCTGGTCGACACCTTGTCCCGTGTAGTCCGTCGTCGCA-TCAACATACTCA 129812
Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342
|| || ||||||| ||| ||||||||||| || || || |||||||| | | |||
Sbjct 129813 GCACCGAAGTGCCGCCATTGGAAGCCGTAGACGGGACCGAGGTCGCCTACTTCGCGGTGT 129872
Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGAT 147392
|||| ||| | | | ||| |||||| | || |||| | ||||||||||
Sbjct 129873 GAGAGTCCCACGCTGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGAT 129922
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583283188418400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |