Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq23972 107 2e-18
seq11113 107 2e-18
seq10668 104 2e-17
>seq23972
Length=267833
Score = 107 bits (118), Expect = 2e-18
Identities = 141/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| ||||||||||| |||| ||| || || | || || |||||||| || || ||
Sbjct 225258 CTCCTTCTGAATGTTGTAGTCGGACAAAGTACGACCATCCTCAAGCTGCTTTCCAGCGAA 225199
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | ||||| ||||| | ||||| | |||||||||| ||||| ||| | ||
Sbjct 225198 GATGAGACGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTGA-CGT 225140
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | |||||| || |||||||| | ||||| || || || |||| || || |
Sbjct 225139 TGTCAATGGTGTCGGAAGACTCCACCTCAAGAGTGATGGTCTTGCCGGTCAGCGTCTTGA 225080
Query 35724 CAAATATCTGCAT 35736
|||| ||||||||
Sbjct 225079 CAAAGATCTGCAT 225067
>seq11113
Length=490148
Score = 107 bits (118), Expect = 2e-18
Identities = 141/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| ||||||||||| |||| || || || | || || |||||||| || |||||
Sbjct 77482 CTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCCTCAAGCTGCTTTCCAGCAAA 77541
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | ||||| ||||| | ||||| | |||||||||| ||||| ||| | ||
Sbjct 77542 GATGAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTTGA-CGT 77600
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | |||||| || || ||||| | ||||| || || || |||| ||| || |
Sbjct 77601 TGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTGA 77660
Query 35724 CAAATATCTGCAT 35736
|||| ||||||||
Sbjct 77661 CAAAGATCTGCAT 77673
>seq10668
Length=117041
Score = 104 bits (114), Expect = 2e-17
Identities = 131/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 41171 TGTGGATGCGCTCGAGGATCAGCTGCGCGACACGATCACCCTTCATCACCACAAAGTCCA 41230
||| ||||||||||| ||||||||| ||||| |||||||||| |||| |||||||
Sbjct 94054 TGTAGATGCGCTCGATGATCAGCTGGGCGACGCGATCACCCTCAGCCACCGCAAAGTCGG 93995
Query 41231 CGTCGTTGTTGTTCACCATCACTATGCCCACGTTGCCCGTGTAGTCGGGATCGATGACGC 41290
|||| || ||| | || || || || | ||| |||||||| ||| |||||||
Sbjct 93994 TGTCGGCGTGGTTGAACAGCAGGATCTTGACCTGGCCGCGGTAGTCGGCATCAATGACGC 93935
Query 41291 CAGCAGCAATGTCGATCTTGTGCTTCAACGCCAGCCCCGATCGGGGCGCGATCCTACCGT 41350
|||| | ||||||| |||||| | || || || || ||||| ||||| | ||||
Sbjct 93934 CAGCGCCCGTGTCGATGAAGTGCTTGGAGGCGAGGCCAGAGCGGGGGGCGATGCGGCCGT 93875
Score = 87.8 bits (96), Expect = 2e-12
Identities = 125/176 (71%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 41175 GATGCGCTCGAGGATCAGCTGCGCGACACGATCACCCTTCATCACCACAAAGTCCACGTC 41234
||||||||| | ||||||||| ||||| || ||||||| |||| ||||||| |||
Sbjct 90415 GATGCGCTCAATGATCAGCTGGGCGACGCGGTCACCCTCGGCCACCGCAAAGTCGGTGTC 90356
Query 41235 GTTGTTGTTCACCATCACTATGCCCACGTTGCCCGTGTAGTCGGGATCGATGACGCCAGC 41294
| || ||| | || | || || | ||| |||||||| ||| |||||||||||
Sbjct 90355 GGCGTGGTTGAACAGAAGGATCTTGACCTGGCCGCGGTAGTCGGCATCAATGACGCCAGC 90296
Query 41295 AGCAATGTCGATCTTGTGCTTCAACGCCAGCCCCGATCGGGGCGCGATCCTACCGT 41350
| ||||||| |||||| | || || || || ||||| ||||| | ||||
Sbjct 90295 GCCCGTGTCGATGAAGTGCTTGGAGGCGAGGCCAGAGCGGGGGGCGATGCGGCCGT 90240
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450635365811480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |