Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq22587 127 2e-24 seq26527 118 1e-21 seq23972 116 4e-21 seq11113 116 4e-21 seq1002 95.1 1e-14 seq20756 82.4 8e-11 >seq22587 Length=423 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||||||||| || ||||| ||||| || |||||||||||| || ||| | Sbjct 303 AGGCGGAGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGG 244 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| |||||||||| ||||| || ||||| || ||||| || Sbjct 243 CCATCCTCAAGCTGCTTGCCAGCAAAAATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCC 184 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | ||||||||||| ||||| || || || Sbjct 183 TTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTG 124 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || | || || ||||| || ||||| Sbjct 123 ATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 86 >seq26527 Length=223112 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||||||||| || ||||| ||||| || |||||||||||| || ||| | Sbjct 222586 AGGCGGAGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGG 222645 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || |||| ||||| || ||||| || ||||| || Sbjct 222646 CCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCC 222705 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | ||||||||||| ||||| || || || Sbjct 222706 TTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTG 222765 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || | || || ||||| || ||||| Sbjct 222766 ATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 222803 >seq23972 Length=267833 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | |||||||| || ||||| ||||| ||||||||||||||| Sbjct 225293 CCACCACGGAGGCGGAGAACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAC 225234 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || || ||||| || || || || || | |||||| || ||||| || Sbjct 225233 AAAGTACGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGGA 225174 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || ||||| || ||||| ||| | |||||||| || ||||| Sbjct 225173 ATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACC 225114 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| ||||| || ||||| | || || || || || ||||| Sbjct 225113 TCAAGAGTGATGGTCTTGCCGGTCAGCGTCTTGACAAAGATCTGCAT 225067 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || || ||||| || ||||||||||| | |||| | ||| || ||||| Sbjct 225497 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCAAGCTGC 225438 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 ||||| || ||||||| ||||| |||||||| || ||||| || || ||||| || || Sbjct 225437 TTGCCAGCGAAAATCAGGCGCTGTTGATCGGGAGGAATGCCCTCCTTGTCTTGGATCTTG 225378 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || ||| | |||||||| ||||| || || | || || || |||||||| Sbjct 225377 GACTTCACATTGTCGATCGTGTCGGATGATTCGACTTCCAATGTGATAGTCTTACCGGTG 225318 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | || || ||||| |||||||| Sbjct 225317 AGCGTCTTGACGAAGATTTGCAT 225295 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || || || ||||| || |||||||||||| | |||| | || || Sbjct 225047 ACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCA 224988 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| || ||||||| ||||| || ||||| || ||||| || || || || Sbjct 224987 AGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGG 224928 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || ||| | ||||| || || || || || || || ||||| || Sbjct 224927 ATCTTCGACTTAACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTG 224868 Query 134685 CCGGT 134689 ||||| Sbjct 224867 CCGGT 224863 >seq11113 Length=490148 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || || || ||||| ||||||||||||||| | || || || || Sbjct 77465 ACGAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCCTCA 77524 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || ||||| || | ||||| || ||||| || || || || || || ||| Sbjct 77525 AGCTGCTTTCCAGCAAAGATGAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGA 77584 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | |||||||| || || || |||||||| ||||| || Sbjct 77585 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTG 77644 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| | ||| || || || || ||||| Sbjct 77645 CCGGTCAGAGTCTTGACAAAGATCTGCAT 77673 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || || ||||| || ||||||||||| | |||| || || |||||||| Sbjct 77243 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCCTCGAGCTGC 77302 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 ||||| || ||||||| ||||| || ||||| || || || || || ||||| || || Sbjct 77303 TTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCTTGGATCTTG 77362 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||||| ||| | |||||||| ||||| || || | || || || |||||||| Sbjct 77363 GACTTGACGTTGTCGATCGTGTCGGATGATTCGACTTCCAATGTGATAGTCTTACCGGTG 77422 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | || || ||||| |||||||| Sbjct 77423 AGTGTCTTGACGAAGATTTGCAT 77445 >seq1002 Length=198801 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || |||||||||||| | ||| | || |||||||| ||||| || |||| Sbjct 112545 CCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAA 112604 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||| ||||| || ||||| || ||||| || || || || || || ||||| || Sbjct 112605 TCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 112664 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | |||||||| || ||||| || || || ||||| || || || | || || |||| Sbjct 112665 CAATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGA 112724 Query 134704 AA 134705 || Sbjct 112725 AA 112726 Score = 86.0 bits (94), Expect = 6e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || |||||||||||| | ||| | || || ||||| ||||| || |||| Sbjct 118101 CCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAA 118160 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||| ||||| || || || || ||||| || || || || || || ||||| || Sbjct 118161 TCAGGCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 118220 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | |||||||| || ||||| || || || ||||| || || || | || || |||| Sbjct 118221 CGATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGA 118280 Query 134704 AA 134705 || Sbjct 118281 AA 118282 >seq20756 Length=5129 Score = 82.4 bits (90), Expect = 8e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 134520 GATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCA 134579 || ||||| || |||||||||||| | |||| | || || ||||| ||||| || Sbjct 4897 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCG 4956 Query 134580 AAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACC 134639 ||||||| ||||| || ||||| || ||||| || || || || || || || || Sbjct 4957 AAAATCAGGCGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTAACG 5016 Query 134640 GCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||| | ||||| || || || || || || || ||||| || ||||| Sbjct 5017 TTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 5066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505220998844120