Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq22587 127 2e-24
seq26527 118 1e-21
seq23972 116 4e-21
seq11113 116 4e-21
seq1002 95.1 1e-14
seq20756 82.4 8e-11
>seq22587
Length=423
Score = 127 bits (140), Expect = 2e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| || | ||||||||| || ||||| ||||| || |||||||||||| || ||| |
Sbjct 303 AGGCGGAGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGG 244
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
|| || ||||| ||||| |||||||||| ||||| || ||||| || ||||| ||
Sbjct 243 CCATCCTCAAGCTGCTTGCCAGCAAAAATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCC 184
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || || || || ||||| ||| | ||||||||||| ||||| || || ||
Sbjct 183 TTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTG 124
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || || || || | || || ||||| || |||||
Sbjct 123 ATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 86
>seq26527
Length=223112
Score = 118 bits (130), Expect = 1e-21
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| || | ||||||||| || ||||| ||||| || |||||||||||| || ||| |
Sbjct 222586 AGGCGGAGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGG 222645
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
|| || ||||| ||||| || || |||| ||||| || ||||| || ||||| ||
Sbjct 222646 CCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCC 222705
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || || || || ||||| ||| | ||||||||||| ||||| || || ||
Sbjct 222706 TTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTG 222765
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || || || || | || || ||||| || |||||
Sbjct 222766 ATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 222803
>seq23972
Length=267833
Score = 116 bits (128), Expect = 4e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | |||||||| || ||||| ||||| |||||||||||||||
Sbjct 225293 CCACCACGGAGGCGGAGAACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAC 225234
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| || || || || ||||| || || || || || | |||||| || ||||| ||
Sbjct 225233 AAAGTACGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGGA 225174
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || || || || ||||| || ||||| ||| | |||||||| || |||||
Sbjct 225173 ATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACC 225114
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| ||||| ||||| || ||||| | || || || || || |||||
Sbjct 225113 TCAAGAGTGATGGTCTTGCCGGTCAGCGTCTTGACAAAGATCTGCAT 225067
Score = 114 bits (126), Expect = 1e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570
|| || || || ||||| || ||||||||||| | |||| | ||| || |||||
Sbjct 225497 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCAAGCTGC 225438
Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630
||||| || ||||||| ||||| |||||||| || ||||| || || ||||| || ||
Sbjct 225437 TTGCCAGCGAAAATCAGGCGCTGTTGATCGGGAGGAATGCCCTCCTTGTCTTGGATCTTG 225378
Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690
|| || ||| | |||||||| ||||| || || | || || || ||||||||
Sbjct 225377 GACTTCACATTGTCGATCGTGTCGGATGATTCGACTTCCAATGTGATAGTCTTACCGGTG 225318
Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713
| || || ||||| ||||||||
Sbjct 225317 AGCGTCTTGACGAAGATTTGCAT 225295
Score = 91.5 bits (100), Expect = 1e-13
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
|| ||||| || || || ||||| || |||||||||||| | |||| | || ||
Sbjct 225047 ACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCA 224988
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
||||| ||||| || ||||||| ||||| || ||||| || ||||| || || || ||
Sbjct 224987 AGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGG 224928
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684
|| || || || ||| | ||||| || || || || || || || ||||| ||
Sbjct 224927 ATCTTCGACTTAACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTG 224868
Query 134685 CCGGT 134689
|||||
Sbjct 224867 CCGGT 224863
>seq11113
Length=490148
Score = 116 bits (128), Expect = 4e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
|||||||| || || || ||||| ||||||||||||||| | || || || ||
Sbjct 77465 ACGAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCCTCA 77524
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
||||| || || ||||| || | ||||| || ||||| || || || || || || |||
Sbjct 77525 AGCTGCTTTCCAGCAAAGATGAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGA 77584
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684
|| || ||||| ||| | |||||||| || || || |||||||| ||||| ||
Sbjct 77585 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTG 77644
Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||| | ||| || || || || |||||
Sbjct 77645 CCGGTCAGAGTCTTGACAAAGATCTGCAT 77673
Score = 114 bits (126), Expect = 1e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570
|| || || || ||||| || ||||||||||| | |||| || || ||||||||
Sbjct 77243 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCCTCGAGCTGC 77302
Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630
||||| || ||||||| ||||| || ||||| || || || || || ||||| || ||
Sbjct 77303 TTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCTTGGATCTTG 77362
Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690
||||| ||| | |||||||| ||||| || || | || || || ||||||||
Sbjct 77363 GACTTGACGTTGTCGATCGTGTCGGATGATTCGACTTCCAATGTGATAGTCTTACCGGTG 77422
Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713
| || || ||||| ||||||||
Sbjct 77423 AGTGTCTTGACGAAGATTTGCAT 77445
>seq1002
Length=198801
Score = 95.1 bits (104), Expect = 1e-14
Identities = 130/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583
|||| || |||||||||||| | ||| | || |||||||| ||||| || ||||
Sbjct 112545 CCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAA 112604
Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643
||| ||||| || ||||| || ||||| || || || || || || ||||| ||
Sbjct 112605 TCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 112664
Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703
| | |||||||| || ||||| || || || ||||| || || || | || || ||||
Sbjct 112665 CAATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGA 112724
Query 134704 AA 134705
||
Sbjct 112725 AA 112726
Score = 86.0 bits (94), Expect = 6e-12
Identities = 128/182 (70%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583
|||| || |||||||||||| | ||| | || || ||||| ||||| || ||||
Sbjct 118101 CCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAA 118160
Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643
||| ||||| || || || || ||||| || || || || || || ||||| ||
Sbjct 118161 TCAGGCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 118220
Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703
| | |||||||| || ||||| || || || ||||| || || || | || || ||||
Sbjct 118221 CGATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGA 118280
Query 134704 AA 134705
||
Sbjct 118281 AA 118282
>seq20756
Length=5129
Score = 82.4 bits (90), Expect = 8e-11
Identities = 120/170 (71%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 134520 GATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCA 134579
|| ||||| || |||||||||||| | |||| | || || ||||| ||||| ||
Sbjct 4897 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCG 4956
Query 134580 AAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACC 134639
||||||| ||||| || ||||| || ||||| || || || || || || || ||
Sbjct 4957 AAAATCAGGCGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTAACG 5016
Query 134640 GCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689
||| | ||||| || || || || || || || ||||| || |||||
Sbjct 5017 TTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 5066
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505220998844120
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