Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq18890 102 1e-16 >seq18890 Length=446397 Score = 102 bits (112), Expect = 1e-16 Identities = 178/257 (69%), Gaps = 3/257 (1%) Strand=Plus/Minus Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATT 39973 || || |||||||| || ||| ||||| || ||||| || |||| || |||| || Sbjct 408932 TCGGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAGCATCGAGCCTCAGGAACC 408873 Query 39974 TGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCA 40033 || ||||| | || || | || | | || || || || || ||||| ||||||| Sbjct 408872 TGGACCTCGGCACTGAAGCGCTCAACGAGGTTCTCGTTGACGATGCCATCTGAAGCGGCA 408813 Query 40034 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGG--TG-TCAATTTATTCCAG 40090 || || || | | ||| || || || |||||||| || || || |||||| Sbjct 408812 AAGAAGGCAAGGATGTGTGAGATGAAGTACTTTTCATCATCATTGATCTTGTTGTTCCAG 408753 Query 40091 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTT 40150 || | || ||| || |||| ||| | ||||| || ||||| || || ||||||||||| Sbjct 408752 TCGTGGAGATCCTTAGATAGATCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCTGCCTTC 408693 Query 40151 TTGTACATGTTCCATAT 40167 |||||||| | ||| || Sbjct 408692 TTGTACATTTGCCAAAT 408676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686667686424840