Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq23972 100 2e-16
seq11113 100 2e-16
>seq23972
Length=267833
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|| || |||| || | |||||||| | || || || || || || |||||||| |
Sbjct 225521 CCACCACGCAGACGGAGGACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAC 225462
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | |||| |||| || ||||| || || ||| |||| || ||||||||||| || ||
Sbjct 225461 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGATCGGGAGGA 225402
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| ||||| || || ||||||| |||| | || | ||||| | | ||| |||
Sbjct 225401 ATGCCCTCCTTGTCTTGGATCTTGGACTTCACATTGTCGATCGTGTCGGATGATTCGACT 225342
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| | || |||| || || || || || || || ||||||||||||
Sbjct 225341 TCCAATGTGATAGTCTTACCGGTGAGCGTCTTGACGAAGATTTGCATA 225294
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || ||||| ||||||||| || | || | || || ||||| || ||
Sbjct 225263 GTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGACCATCCTCAAGCTGCTTTCCA 225204
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | |||||||||||||| || || || | |||||| || || ||||| ||
Sbjct 225203 GCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTG 225144
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | | || | ||||| | | || || || ||||| || | ||||| ||||| ||
Sbjct 225143 ACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGAGTGATGGTCTTGCCGGTCAGCGTC 225084
Query 27231 TTCACAAAGATTTGCATA 27248
|| |||||||| ||||||
Sbjct 225083 TTGACAAAGATCTGCATA 225066
>seq11113
Length=490148
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|| || |||| || | |||||||| | || || || || || || |||||||| |
Sbjct 77219 CCACCACGCAGACGGAGGACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAC 77278
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | |||| | || |||||||| || || ||| |||| || |||||||| || || ||
Sbjct 77279 AGGGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGG 77338
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| |||||| || || ||||||| || | | | || | ||||| | | ||| |||
Sbjct 77339 ATACCCTCCTTGTCTTGGATCTTGGACTTGACGTTGTCGATCGTGTCGGATGATTCGACT 77398
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| | || |||| || || || || || || || ||||||||||||
Sbjct 77399 TCCAATGTGATAGTCTTACCGGTGAGTGTCTTGACGAAGATTTGCATA 77446
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424788971646072
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |