Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq28027 95.1 4e-14 seq18890 95.1 4e-14 >seq28027 Length=10271 Score = 95.1 bits (104), Expect = 4e-14 Identities = 117/159 (74%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 443709 CGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCCAT 443768 || || |||||||| || || || || || | || || ||||| || || |||||||| Sbjct 5261 CGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAGCGGT-GCCTTCGCCTCCAT 5203 Query 443769 CTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAG 443828 ||||||| | || ||||| || || |||| || ||||| || ||||| || ||| Sbjct 5202 CTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTTCTCCAACGAGCTCATCTC 5143 Query 443829 TCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCT 443867 ||| ||||||||| | || ||||||||| ||||| || Sbjct 5142 TCGTGACGAGGGTCTTCACACCGACTTCGCTTGTCTGCT 5104 >seq18890 Length=446397 Score = 95.1 bits (104), Expect = 4e-14 Identities = 117/159 (74%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 443709 CGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCCAT 443768 || || |||||||| || || || || || | || || ||||| || || |||||||| Sbjct 160492 CGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAGCGGT-GCCTTCGCCTCCAT 160434 Query 443769 CTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAG 443828 ||||||| | || ||||| || || |||| || ||||| || ||||| || ||| Sbjct 160433 CTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTTCTCCAACGAGCTCATCTC 160374 Query 443829 TCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCT 443867 ||| ||||||||| | || ||||||||| ||||| || Sbjct 160373 TCGTGACGAGGGTCTTCACACCGACTTCGCTTGTCTGCT 160335 Score = 95.1 bits (104), Expect = 4e-14 Identities = 117/159 (74%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 443709 CGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCCAT 443768 || || |||||||| || || || || || | || || ||||| || || |||||||| Sbjct 409138 CGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAGCGGT-GCCTTCGCCTCCAT 409196 Query 443769 CTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAG 443828 ||||||| | || ||||| || || |||| || ||||| || ||||| || ||| Sbjct 409197 CTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTTCTCCAACGAGCTCATCTC 409256 Query 443829 TCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCT 443867 ||| ||||||||| | || ||||||||| ||||| || Sbjct 409257 TCGTGACGAGGGTCTTCACACCGACTTCGCTTGTCTGCT 409295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1587764536065045