Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq24749 264 1e-65
seq27938 176 6e-39
seq11514 93.3 5e-14
seq891 87.8 2e-12
>seq24749
Length=740841
Score = 264 bits (292), Expect = 1e-65
Identities = 949/1466 (65%), Gaps = 41/1466 (3%)
Strand=Plus/Minus
Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765
|||||||||| | ||||| || || ||||| || || || || | ||| || | |||
Sbjct 417059 GGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCGTTGTTGCCAAGGATCTGCGAGGTAC 417000
Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825
||| || ||||| || |||| | |||||||||||| | || | | |||||| |
Sbjct 416999 TGGCCGTGGGCATGGGCGCCACGAGAAGACTGTTACGGACGCCATGTTGCTTGATCTGGC 416940
Query 110826 CCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTG 110883
|||||| | ||||||| | | | || | || || || |||| ||||||| | ||
Sbjct 416939 TCTTGAGGTCGGCCCAGTCCCAAAGGTCAG-TAGGCTTGACGTTCC-ACATGTCGTATTG 416882
Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943
||| | || ||||| |||| || |||||| |||| |||| |||| | | |||
Sbjct 416881 AAGGATACCCTGGGAGACGGGCGAGCCCTCATAGGTGGAGTAGGGGCCTTCCTCCTGAGC 416822
Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003
| | || | ||||| ||||| || ||||| |||||||| | || |
Sbjct 416821 GAGCTTGCATGACATGGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCTGCTTGTTGAG 416762
Query 111004 CTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACC 111063
||||||||| ||| || ||||| | |||| || || |||| || | ||
Sbjct 416761 CTCCTTGGCCTCAGGCGACTCAAAGGGCATGCGGAGAGCAAGGAAAGCATCAGCCAAGCC 416702
Query 111064 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAA---C 111120
|| ||||| | ||||| || | || ||||| || || | ||| || ||| | |
Sbjct 416701 CTGGACACCAAGGCCAATGGGCCGATGGCGCATGTTG--CTGTTGCG-AGCCTCGATGAC 416645
Query 111121 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 111180
||| ||| || ||| |||| | ||| || || || || | || |||| |
Sbjct 416644 GGGGTAATGGTTCACGTCGATGATCCTGTTGAGGTTCCTGACGACGACCTGAGTGACCTG 416585
Query 111181 ATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGAT 111240
|| || || | | ||| | || | | | || || || || ||||| |
Sbjct 416584 GTGGAGCTTCTTGAAGTCATACACGCCGTTGTTGTAATCAACGTAGGCGGGCAGGGCCAG 416525
Query 111241 TGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACA 111300
|| |||| ||||| || || |||||| | | |||||| | ||| ||||| ||
Sbjct 416524 AGAGGCCAGGTTGCAGACGGCAACCTCATCGGGTGCCGAGTACTCGACAATCTCTGTGCA 416465
Query 111301 TAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATC 111360
| |||||| || ||| || || | ||||| ||||| ||||| |||||| |||
Sbjct 416464 CAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATC 416405
Query 111361 CTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA- 111419
||||||||||||| |||| | || ||||| ||||| | | ||| | || | |||||
Sbjct 416404 CTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGACGGCGTACCAAAG 416345
Query 111420 CATCGGCGGCTGGTACAATGGCGTT--GGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGA 111476
| || ||| || | |||| || ||||| | || || ||||||||| ||| |
Sbjct 416344 CTTCTGCGCCTTG----ATGGTCTTGCGGCCCTTGCCAGCCTTCTCGTACTTCTCGTACA 416289
Query 111477 GGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAA 111536
||| |||||||| ||||| ||| | || || || || || || || | |
Sbjct 416288 AGGCCTCAAACTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCACTCGTTGGGGCACATGA 416229
Query 111537 GAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG--A 111594
||| ||| | || | ||| || ||||||||||| || || || |||||||||| |
Sbjct 416228 GAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCGGGGATCCACAGGGCCA 416169
Query 111595 TGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAA 111654
|||| ||||| | | ||| | || || | || ||||| || | ||||||||
Sbjct 416168 GGAAA--AGATCGCGAGCGCGAACTTCCTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAA 416111
Query 111655 CTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC------CTT-TC 111707
||| | || ||| ||||||||||||||||| |||| || | || || ||| |
Sbjct 416110 CTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCGCCGGGACGCTTGTT 416051
Query 111708 GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAA 111767
| ||||| || | || |||||||| ||| ||| || ||||||||||| || | |
Sbjct 416050 GCCGCCC----TGGTCAACGTAGCGCGCCGTGTTGTTGAAGACGCGAAGCATGGGCGTGA 415995
Query 111768 TACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGA 111827
| || | ||| || || || || ||| ||| | |||| | | |||||
Sbjct 415994 TGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCAGTGGCACGGATGCGATGGA 415935
Query 111828 TGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCAT 111887
|| || |||||||| |||||| ||| ||||| ||||| | | || || | |
Sbjct 415934 CGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGT 415875
Query 111888 AGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC 111947
||||||| | || ||| ||||| || | | |||||||| |||| ||| |
Sbjct 415874 AGATACCTTCAATGCTGTCATCCTTCATGTCAACCAGGAAGCAGGACGACAGCTGAGCCT 415815
Query 111948 TTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACA--TACCTTGGGACAT 112005
|| || ||||| ||||||||||| || | |||||| |||| | | || ||||||
Sbjct 415814 GAGGCGTGCCAGCGTTGAAGAGGGTAGGAGATGCGTGTGTGAAGAATTTGCT--GGACAT 415757
Query 112006 CTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCG 112065
|| ||| ||||| | |||| |||| || || || ||| |||| | || ||
Sbjct 415756 GAGGTTGTACGTCTCAATGACACGCTCAACGTTGTCTCCCCAGATACCGACGGAAACACG 415697
Query 112066 CATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA--AGATAGCTC 112123
||| | ||||| ||| ||| || | |||| || ||| |||| ||||||
Sbjct 415696 CATAATCATGTGCTGCGGGCGCTCGGCAATCTTGCCGTCAAGC--TTGAGGAGATAGGAA 415639
Query 112124 TTCTCAAGGGTTTTGAGACCAAAGTA 112149
||| ||||| |||| ||||||||
Sbjct 415638 CGCTCCAGGGTCTTGAAGCCAAAGTA 415613
Score = 93.3 bits (102), Expect = 5e-14
Identities = 217/324 (67%), Gaps = 4/324 (1%)
Strand=Plus/Plus
Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765
|||||||||| | ||||| || || ||||| || || || || | ||| || | |||
Sbjct 446945 GGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCGTTGTTGCCAAGGATCTGCGAGGTAC 447004
Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825
||| || ||||| || |||| | |||||||||||| | || | | |||||| |
Sbjct 447005 TGGCCGTGGGCATGGGCGCCACGAGAAGACTGTTACGGACGCCATGTTGCTTGATCTGGC 447064
Query 110826 CCTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTG 110883
|||||| | |||||| | || | || | || || || || ||||||||| | ||
Sbjct 447065 TCTTGAGGTCGGCCCAGTCCCAAAGGTCAG-TAGGCTTGACGTT-CCACATGTCGTATTG 447122
Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943
||| | || ||||| |||| || |||||| |||| |||| |||| | | |||
Sbjct 447123 AAGGATACCCTGGGAGACGGGCGAGCCCTCATAGGTGGAGTAGGGGCCTTCCTCCTGAGC 447182
Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003
| | || | ||||| ||||| || ||||| |||||||| | || |
Sbjct 447183 GAGCTTGCATGACATGGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCTGCTTGTTGAG 447242
Query 111004 CTCCTTGGCTTCATCTGAATCAAA 111027
||||||||| ||| || |||||
Sbjct 447243 CTCCTTGGCCTCAGGCGACTCAAA 447266
>seq27938
Length=10276
Score = 176 bits (194), Expect = 6e-39
Identities = 450/678 (66%), Gaps = 23/678 (3%)
Strand=Plus/Plus
Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289
|| ||||| | || |||| ||||| || || |||||| | | |||||| | |
Sbjct 9600 GGCAGGGCCAGAGAGGCCAGGTTGCAGACGGCAACCTCATCGGGTGCCGAGTACTCGACA 9659
Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349
|| ||||| || | |||||| || ||| || || | ||||| ||||| ||||| |
Sbjct 9660 ATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGG 9719
Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409
||||| |||||||||||||||| |||| | || ||||| ||||| | | ||| |
Sbjct 9720 TTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGACG 9779
Query 111410 GCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTT--GGCCCGT-CCCTCCGCCTCGTA 111465
|| | ||||| | || ||| || | |||| || ||||| | || || ||||||
Sbjct 9780 GCGTACCAAAGCTTCTGCGCCTTG----ATGGTCTTGCGGCCCTTGCCAGCCTTCTCGTA 9835
Query 111466 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTC 111525
||| ||| | ||| |||||||| ||||| ||| | || || || || ||
Sbjct 9836 CTTCTCGTACAAGGCCTCAAACTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCACTCGTT 9895
Query 111526 TGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAAT 111585
|| || | |||| ||| | || | ||| || ||||||||||| || || || ||
Sbjct 9896 GGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCGGGGAT 9955
Query 111586 CCACAGGG--ATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 111643
|||||||| | |||| ||||| | | ||| | || || | || ||||| ||
Sbjct 9956 CCACAGGGCCAGGAAA--AGATCGCGAGCGCGAACTTCCTCCTTGCCGTGGTTCTTGCGG 10013
Query 111644 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC- 111702
| ||||||||||| | || ||| ||||||||||||||||| |||| || | || ||
Sbjct 10014 AGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCGCCG 10073
Query 111703 -----CTT-TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAG 111756
||| | | ||||| || | || |||||||| ||| ||| || ||||||||
Sbjct 10074 GGACGCTTGTTGCCGCCC----TGGTCAACGTAGCGCGCCGTGTTGTTGAAGACGCGAAG 10129
Query 111757 CATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCT 111816
||| || | || || | ||| || || || || ||| ||| | |||| |
Sbjct 10130 CATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCAGTGGCACG 10189
Query 111817 CACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGT 111876
| ||||| || || |||||||| |||||| ||| ||||| ||||| | |
Sbjct 10190 GATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTT 10249
Query 111877 AAGAGTTCCATAGATACC 111894
|| || | ||||||||
Sbjct 10250 GAGGGTGTCGTAGATACC 10267
>seq11514
Length=5315
Score = 93.3 bits (102), Expect = 5e-14
Identities = 217/324 (67%), Gaps = 4/324 (1%)
Strand=Plus/Plus
Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765
|||||||||| | ||||| || || ||||| || || || || | ||| || | |||
Sbjct 56 GGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCGTTGTTGCCAAGGATCTGCGAGGTAC 115
Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825
||| || ||||| || |||| | |||||||||||| | || | | |||||| |
Sbjct 116 TGGCCGTGGGCATGGGCGCCACGAGAAGACTGTTACGGACGCCATGTTGCTTGATCTGGC 175
Query 110826 CCTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTG 110883
|||||| | |||||| | || | || | || || || || ||||||||| | ||
Sbjct 176 TCTTGAGGTCGGCCCAGTCCCAAAGGTCAG-TAGGCTTGACGTT-CCACATGTCGTATTG 233
Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943
||| | || ||||| |||| || |||||| |||| |||| |||| | | |||
Sbjct 234 AAGGATACCCTGGGAGACGGGCGAGCCCTCATAGGTGGAGTAGGGGCCTTCCTCCTGAGC 293
Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003
| | || | ||||| ||||| || ||||| |||||||| | || |
Sbjct 294 GAGCTTGCATGACATGGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCTGCTTGTTGAG 353
Query 111004 CTCCTTGGCTTCATCTGAATCAAA 111027
||||||||| ||| || |||||
Sbjct 354 CTCCTTGGCCTCAGGCGACTCAAA 377
>seq891
Length=198929
Score = 87.8 bits (96), Expect = 2e-12
Identities = 165/243 (68%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 181802 AGCGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAAT 181861
||||||| ||||| ||||| | ||| || | ||||| ||||| || ||| |
Sbjct 114905 AGCGTCTGATCCACCGGCAAGACGAGAACCGAAGTTACCACTGGGCTCGAGGCAGTTGAC 114846
Query 181862 GTTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCGCAAGGGACACTTC 181921
||||||||||| | ||| | ||| | || ||| || | ||| |||| |||
Sbjct 114845 ATTGTTTGAACCGACAAAGTTCTGGGCGAGGCCAATGATCGTCTGTTGAAGAGACATTTC 114786
Query 181922 ACCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTC 181981
|||||||||||| || | ||| || | |||||| | ||||| | | |||||| ||
Sbjct 114785 ACCGTGGTGGTACGCGGCCTTTTCGGAAACATAACCGGCCAATTCCACGACCTTCTGGTC 114726
Query 181982 ATCTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACC 182041
| ||||||| | | ||||||||| |||| || |||| ||| ||| || |||||
Sbjct 114725 TTTGATGAGGTTTCTCTTGAAGCAAGCGAACATGACCTTCCGCTGACCAGGTTTCAGACC 114666
Query 182042 ATC 182044
||
Sbjct 114665 GTC 114663
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627811552917600
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