Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq24749 264 1e-65 seq27938 176 6e-39 seq11514 93.3 5e-14 seq891 87.8 2e-12 >seq24749 Length=740841 Score = 264 bits (292), Expect = 1e-65 Identities = 949/1466 (65%), Gaps = 41/1466 (3%) Strand=Plus/Minus Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765 |||||||||| | ||||| || || ||||| || || || || | ||| || | ||| Sbjct 417059 GGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCGTTGTTGCCAAGGATCTGCGAGGTAC 417000 Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825 ||| || ||||| || |||| | |||||||||||| | || | | |||||| | Sbjct 416999 TGGCCGTGGGCATGGGCGCCACGAGAAGACTGTTACGGACGCCATGTTGCTTGATCTGGC 416940 Query 110826 CCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTG 110883 |||||| | ||||||| | | | || | || || || |||| ||||||| | || Sbjct 416939 TCTTGAGGTCGGCCCAGTCCCAAAGGTCAG-TAGGCTTGACGTTCC-ACATGTCGTATTG 416882 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943 ||| | || ||||| |||| || |||||| |||| |||| |||| | | ||| Sbjct 416881 AAGGATACCCTGGGAGACGGGCGAGCCCTCATAGGTGGAGTAGGGGCCTTCCTCCTGAGC 416822 Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003 | | || | ||||| ||||| || ||||| |||||||| | || | Sbjct 416821 GAGCTTGCATGACATGGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCTGCTTGTTGAG 416762 Query 111004 CTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACC 111063 ||||||||| ||| || ||||| | |||| || || |||| || | || Sbjct 416761 CTCCTTGGCCTCAGGCGACTCAAAGGGCATGCGGAGAGCAAGGAAAGCATCAGCCAAGCC 416702 Query 111064 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAA---C 111120 || ||||| | ||||| || | || ||||| || || | ||| || ||| | | Sbjct 416701 CTGGACACCAAGGCCAATGGGCCGATGGCGCATGTTG--CTGTTGCG-AGCCTCGATGAC 416645 Query 111121 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 111180 ||| ||| || ||| |||| | ||| || || || || | || |||| | Sbjct 416644 GGGGTAATGGTTCACGTCGATGATCCTGTTGAGGTTCCTGACGACGACCTGAGTGACCTG 416585 Query 111181 ATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGAT 111240 || || || | | ||| | || | | | || || || || ||||| | Sbjct 416584 GTGGAGCTTCTTGAAGTCATACACGCCGTTGTTGTAATCAACGTAGGCGGGCAGGGCCAG 416525 Query 111241 TGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACA 111300 || |||| ||||| || || |||||| | | |||||| | ||| ||||| || Sbjct 416524 AGAGGCCAGGTTGCAGACGGCAACCTCATCGGGTGCCGAGTACTCGACAATCTCTGTGCA 416465 Query 111301 TAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATC 111360 | |||||| || ||| || || | ||||| ||||| ||||| |||||| ||| Sbjct 416464 CAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATC 416405 Query 111361 CTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA- 111419 ||||||||||||| |||| | || ||||| ||||| | | ||| | || | ||||| Sbjct 416404 CTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGACGGCGTACCAAAG 416345 Query 111420 CATCGGCGGCTGGTACAATGGCGTT--GGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGA 111476 | || ||| || | |||| || ||||| | || || ||||||||| ||| | Sbjct 416344 CTTCTGCGCCTTG----ATGGTCTTGCGGCCCTTGCCAGCCTTCTCGTACTTCTCGTACA 416289 Query 111477 GGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAA 111536 ||| |||||||| ||||| ||| | || || || || || || || | | Sbjct 416288 AGGCCTCAAACTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCACTCGTTGGGGCACATGA 416229 Query 111537 GAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG--A 111594 ||| ||| | || | ||| || ||||||||||| || || || |||||||||| | Sbjct 416228 GAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCGGGGATCCACAGGGCCA 416169 Query 111595 TGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAA 111654 |||| ||||| | | ||| | || || | || ||||| || | |||||||| Sbjct 416168 GGAAA--AGATCGCGAGCGCGAACTTCCTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAA 416111 Query 111655 CTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC------CTT-TC 111707 ||| | || ||| ||||||||||||||||| |||| || | || || ||| | Sbjct 416110 CTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCGCCGGGACGCTTGTT 416051 Query 111708 GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAA 111767 | ||||| || | || |||||||| ||| ||| || ||||||||||| || | | Sbjct 416050 GCCGCCC----TGGTCAACGTAGCGCGCCGTGTTGTTGAAGACGCGAAGCATGGGCGTGA 415995 Query 111768 TACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGA 111827 | || | ||| || || || || ||| ||| | |||| | | ||||| Sbjct 415994 TGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCAGTGGCACGGATGCGATGGA 415935 Query 111828 TGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCAT 111887 || || |||||||| |||||| ||| ||||| ||||| | | || || | | Sbjct 415934 CGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGT 415875 Query 111888 AGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC 111947 ||||||| | || ||| ||||| || | | |||||||| |||| ||| | Sbjct 415874 AGATACCTTCAATGCTGTCATCCTTCATGTCAACCAGGAAGCAGGACGACAGCTGAGCCT 415815 Query 111948 TTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACA--TACCTTGGGACAT 112005 || || ||||| ||||||||||| || | |||||| |||| | | || |||||| Sbjct 415814 GAGGCGTGCCAGCGTTGAAGAGGGTAGGAGATGCGTGTGTGAAGAATTTGCT--GGACAT 415757 Query 112006 CTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCG 112065 || ||| ||||| | |||| |||| || || || ||| |||| | || || Sbjct 415756 GAGGTTGTACGTCTCAATGACACGCTCAACGTTGTCTCCCCAGATACCGACGGAAACACG 415697 Query 112066 CATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA--AGATAGCTC 112123 ||| | ||||| ||| ||| || | |||| || ||| |||| |||||| Sbjct 415696 CATAATCATGTGCTGCGGGCGCTCGGCAATCTTGCCGTCAAGC--TTGAGGAGATAGGAA 415639 Query 112124 TTCTCAAGGGTTTTGAGACCAAAGTA 112149 ||| ||||| |||| |||||||| Sbjct 415638 CGCTCCAGGGTCTTGAAGCCAAAGTA 415613 Score = 93.3 bits (102), Expect = 5e-14 Identities = 217/324 (67%), Gaps = 4/324 (1%) Strand=Plus/Plus Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765 |||||||||| | ||||| || || ||||| || || || || | ||| || | ||| Sbjct 446945 GGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCGTTGTTGCCAAGGATCTGCGAGGTAC 447004 Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825 ||| || ||||| || |||| | |||||||||||| | || | | |||||| | Sbjct 447005 TGGCCGTGGGCATGGGCGCCACGAGAAGACTGTTACGGACGCCATGTTGCTTGATCTGGC 447064 Query 110826 CCTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTG 110883 |||||| | |||||| | || | || | || || || || ||||||||| | || Sbjct 447065 TCTTGAGGTCGGCCCAGTCCCAAAGGTCAG-TAGGCTTGACGTT-CCACATGTCGTATTG 447122 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943 ||| | || ||||| |||| || |||||| |||| |||| |||| | | ||| Sbjct 447123 AAGGATACCCTGGGAGACGGGCGAGCCCTCATAGGTGGAGTAGGGGCCTTCCTCCTGAGC 447182 Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003 | | || | ||||| ||||| || ||||| |||||||| | || | Sbjct 447183 GAGCTTGCATGACATGGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCTGCTTGTTGAG 447242 Query 111004 CTCCTTGGCTTCATCTGAATCAAA 111027 ||||||||| ||| || ||||| Sbjct 447243 CTCCTTGGCCTCAGGCGACTCAAA 447266 >seq27938 Length=10276 Score = 176 bits (194), Expect = 6e-39 Identities = 450/678 (66%), Gaps = 23/678 (3%) Strand=Plus/Plus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || ||||| | || |||| ||||| || || |||||| | | |||||| | | Sbjct 9600 GGCAGGGCCAGAGAGGCCAGGTTGCAGACGGCAACCTCATCGGGTGCCGAGTACTCGACA 9659 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || ||||| || | |||||| || ||| || || | ||||| ||||| ||||| | Sbjct 9660 ATCTCTGTGCACAGGTTGGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGG 9719 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 ||||| |||||||||||||||| |||| | || ||||| ||||| | | ||| | Sbjct 9720 TTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGACG 9779 Query 111410 GCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTT--GGCCCGT-CCCTCCGCCTCGTA 111465 || | ||||| | || ||| || | |||| || ||||| | || || |||||| Sbjct 9780 GCGTACCAAAGCTTCTGCGCCTTG----ATGGTCTTGCGGCCCTTGCCAGCCTTCTCGTA 9835 Query 111466 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTC 111525 ||| ||| | ||| |||||||| ||||| ||| | || || || || || Sbjct 9836 CTTCTCGTACAAGGCCTCAAACTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCACTCGTT 9895 Query 111526 TGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAAT 111585 || || | |||| ||| | || | ||| || ||||||||||| || || || || Sbjct 9896 GGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCGGGGAT 9955 Query 111586 CCACAGGG--ATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 111643 |||||||| | |||| ||||| | | ||| | || || | || ||||| || Sbjct 9956 CCACAGGGCCAGGAAA--AGATCGCGAGCGCGAACTTCCTCCTTGCCGTGGTTCTTGCGG 10013 Query 111644 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC- 111702 | ||||||||||| | || ||| ||||||||||||||||| |||| || | || || Sbjct 10014 AGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAAGCGCCG 10073 Query 111703 -----CTT-TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAG 111756 ||| | | ||||| || | || |||||||| ||| ||| || |||||||| Sbjct 10074 GGACGCTTGTTGCCGCCC----TGGTCAACGTAGCGCGCCGTGTTGTTGAAGACGCGAAG 10129 Query 111757 CATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCT 111816 ||| || | || || | ||| || || || || ||| ||| | |||| | Sbjct 10130 CATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCAGTGGCACG 10189 Query 111817 CACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGT 111876 | ||||| || || |||||||| |||||| ||| ||||| ||||| | | Sbjct 10190 GATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTT 10249 Query 111877 AAGAGTTCCATAGATACC 111894 || || | |||||||| Sbjct 10250 GAGGGTGTCGTAGATACC 10267 >seq11514 Length=5315 Score = 93.3 bits (102), Expect = 5e-14 Identities = 217/324 (67%), Gaps = 4/324 (1%) Strand=Plus/Plus Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765 |||||||||| | ||||| || || ||||| || || || || | ||| || | ||| Sbjct 56 GGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCGTTGTTGCCAAGGATCTGCGAGGTAC 115 Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825 ||| || ||||| || |||| | |||||||||||| | || | | |||||| | Sbjct 116 TGGCCGTGGGCATGGGCGCCACGAGAAGACTGTTACGGACGCCATGTTGCTTGATCTGGC 175 Query 110826 CCTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTG 110883 |||||| | |||||| | || | || | || || || || ||||||||| | || Sbjct 176 TCTTGAGGTCGGCCCAGTCCCAAAGGTCAG-TAGGCTTGACGTT-CCACATGTCGTATTG 233 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943 ||| | || ||||| |||| || |||||| |||| |||| |||| | | ||| Sbjct 234 AAGGATACCCTGGGAGACGGGCGAGCCCTCATAGGTGGAGTAGGGGCCTTCCTCCTGAGC 293 Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003 | | || | ||||| ||||| || ||||| |||||||| | || | Sbjct 294 GAGCTTGCATGACATGGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCTGCTTGTTGAG 353 Query 111004 CTCCTTGGCTTCATCTGAATCAAA 111027 ||||||||| ||| || ||||| Sbjct 354 CTCCTTGGCCTCAGGCGACTCAAA 377 >seq891 Length=198929 Score = 87.8 bits (96), Expect = 2e-12 Identities = 165/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 181802 AGCGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAAT 181861 ||||||| ||||| ||||| | ||| || | ||||| ||||| || ||| | Sbjct 114905 AGCGTCTGATCCACCGGCAAGACGAGAACCGAAGTTACCACTGGGCTCGAGGCAGTTGAC 114846 Query 181862 GTTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCGCAAGGGACACTTC 181921 ||||||||||| | ||| | ||| | || ||| || | ||| |||| ||| Sbjct 114845 ATTGTTTGAACCGACAAAGTTCTGGGCGAGGCCAATGATCGTCTGTTGAAGAGACATTTC 114786 Query 181922 ACCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTC 181981 |||||||||||| || | ||| || | |||||| | ||||| | | |||||| || Sbjct 114785 ACCGTGGTGGTACGCGGCCTTTTCGGAAACATAACCGGCCAATTCCACGACCTTCTGGTC 114726 Query 181982 ATCTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACC 182041 | ||||||| | | ||||||||| |||| || |||| ||| ||| || ||||| Sbjct 114725 TTTGATGAGGTTTCTCTTGAAGCAAGCGAACATGACCTTCCGCTGACCAGGTTTCAGACC 114666 Query 182042 ATC 182044 || Sbjct 114665 GTC 114663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627811552917600