Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq23972 163 9e-35 seq11113 154 4e-32 seq22750 87.8 5e-12 seq21512 87.8 5e-12 seq18446 87.8 5e-12 >seq23972 Length=267833 Score = 163 bits (180), Expect = 9e-35 Identities = 177/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | ||||| || |||||||| ||||| || ||||| || | Sbjct 225301 TTTGCATACCACCACGGAGGCGGAGAACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGT 225242 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || || || || ||||| ||||| || |||||||| ||||| ||||| || || | Sbjct 225241 AGTCGGACAAAGTACGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGT 225182 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | |||||||| || || || |||||||| || | || || || ||||| | || || | Sbjct 225181 CGGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATGGTGTCGGAAG 225122 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || ||||| || | ||||| ||||| || || || ||||| |||||||| Sbjct 225121 ACTCCACCTCAAGAGTGATGGTCTTGCCGGTCAGCGTCTTGACAAAGATCTGCAT 225067 >seq11113 Length=490148 Score = 154 bits (170), Expect = 4e-32 Identities = 175/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | ||||| || |||||||| ||||| || ||||| || | Sbjct 77439 TTTGCATACCACCACGAAGGCGGAGAACGAGGTGAAGAGTCGACTCCTTCTGAATGTTGT 77498 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| ||||| || |||||||||||||| || || || || | Sbjct 77499 AGTCGGACAGAGTACGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGGCGCTGTTGGT 77558 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | |||||||| || || || |||||||| || | || || || || || | || || | Sbjct 77559 CGGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAG 77618 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || || | ||||| ||||| || || || ||||| |||||||| Sbjct 77619 ACTCAACCTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 77673 >seq22750 Length=328496 Score = 87.8 bits (96), Expect = 5e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 378249 AGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTC 378308 ||| || || ||||||||||| | ||| |||||||| |||| || |||||||| ||||| Sbjct 197912 AGTCTTGACAGCAGTATCAATAAGACCCTCACGACCAGCCATGGCGTGGAAGAAGAATTC 197971 Query 378309 AGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATC 378368 ||||||| || |||| | | | || |||||| || || | || | || || | Sbjct 197972 GCTAGGAGTGAGGCCACGGAGATACGAGTTCTCAACGAAACCGCGGGCTTCAGGAGAGTA 198031 Query 378369 ATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCC 378428 ||||| || || | ||||| | || || | || || || | ||||| || ||||| Sbjct 198032 ATCATCCTTGGTGAAGTGAGGCAGAGTGCGGTACTTGAAGCCGAAAGGAATACGCTTTCC 198091 Query 378429 ATCAACATTCTGTTGACC 378446 || || | || ||||| Sbjct 198092 CTCGACGATTTGCTGACC 198109 >seq21512 Length=824 Score = 87.8 bits (96), Expect = 5e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 378249 AGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTC 378308 ||| || || ||||||||||| | ||| |||||||| |||| || |||||||| ||||| Sbjct 81 AGTCTTGACAGCAGTATCAATAAGACCCTCACGACCAGCCATGGCGTGGAAGAAGAATTC 140 Query 378309 AGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATC 378368 ||||||| || |||| | | | || |||||| || || | || | || || | Sbjct 141 GCTAGGAGTGAGGCCACGGAGATACGAGTTCTCAACGAAACCGCGGGCTTCAGGAGAGTA 200 Query 378369 ATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCC 378428 ||||| || || | ||||| | || || | || || || | ||||| || ||||| Sbjct 201 ATCATCCTTGGTGAAGTGAGGCAGAGTGCGGTACTTGAAGCCGAAAGGAATACGCTTTCC 260 Query 378429 ATCAACATTCTGTTGACC 378446 || || | || ||||| Sbjct 261 CTCGACGATTTGCTGACC 278 >seq18446 Length=73582 Score = 87.8 bits (96), Expect = 5e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 378249 AGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTC 378308 ||| || || ||||||||||| | ||| |||||||| |||| || |||||||| ||||| Sbjct 51099 AGTCTTGACAGCAGTATCAATAAGACCCTCACGACCAGCCATGGCGTGGAAGAAGAATTC 51040 Query 378309 AGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATC 378368 ||||||| || |||| | | | || |||||| || || | || | || || | Sbjct 51039 GCTAGGAGTGAGGCCACGGAGATACGAGTTCTCAACGAAACCGCGGGCTTCAGGAGAGTA 50980 Query 378369 ATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCC 378428 ||||| || || | ||||| | || || | || || || | ||||| || ||||| Sbjct 50979 ATCATCCTTGGTGAAGTGAGGCAGAGTGCGGTACTTGAAGCCGAAAGGAATACGCTTTCC 50920 Query 378429 ATCAACATTCTGTTGACC 378446 || || | || ||||| Sbjct 50919 CTCGACGATTTGCTGACC 50902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514709229934043