Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq23972 163 9e-35
seq11113 154 4e-32
seq22750 87.8 5e-12
seq21512 87.8 5e-12
seq18446 87.8 5e-12
>seq23972
Length=267833
Score = 163 bits (180), Expect = 9e-35
Identities = 177/235 (75%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | ||||| || |||||||| ||||| || ||||| || |
Sbjct 225301 TTTGCATACCACCACGGAGGCGGAGAACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGT 225242
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || || || || ||||| ||||| || |||||||| ||||| ||||| || || |
Sbjct 225241 AGTCGGACAAAGTACGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGT 225182
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| |||||||| || || || |||||||| || | || || || ||||| | || || |
Sbjct 225181 CGGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATGGTGTCGGAAG 225122
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || ||||| || | ||||| ||||| || || || ||||| ||||||||
Sbjct 225121 ACTCCACCTCAAGAGTGATGGTCTTGCCGGTCAGCGTCTTGACAAAGATCTGCAT 225067
>seq11113
Length=490148
Score = 154 bits (170), Expect = 4e-32
Identities = 175/235 (74%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | ||||| || |||||||| ||||| || ||||| || |
Sbjct 77439 TTTGCATACCACCACGAAGGCGGAGAACGAGGTGAAGAGTCGACTCCTTCTGAATGTTGT 77498
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || ||||| ||||| || |||||||||||||| || || || || |
Sbjct 77499 AGTCGGACAGAGTACGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGGCGCTGTTGGT 77558
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| |||||||| || || || |||||||| || | || || || || || | || || |
Sbjct 77559 CGGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAG 77618
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || || || | ||||| ||||| || || || ||||| ||||||||
Sbjct 77619 ACTCAACCTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 77673
>seq22750
Length=328496
Score = 87.8 bits (96), Expect = 5e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 378249 AGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTC 378308
||| || || ||||||||||| | ||| |||||||| |||| || |||||||| |||||
Sbjct 197912 AGTCTTGACAGCAGTATCAATAAGACCCTCACGACCAGCCATGGCGTGGAAGAAGAATTC 197971
Query 378309 AGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATC 378368
||||||| || |||| | | | || |||||| || || | || | || || |
Sbjct 197972 GCTAGGAGTGAGGCCACGGAGATACGAGTTCTCAACGAAACCGCGGGCTTCAGGAGAGTA 198031
Query 378369 ATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCC 378428
||||| || || | ||||| | || || | || || || | ||||| || |||||
Sbjct 198032 ATCATCCTTGGTGAAGTGAGGCAGAGTGCGGTACTTGAAGCCGAAAGGAATACGCTTTCC 198091
Query 378429 ATCAACATTCTGTTGACC 378446
|| || | || |||||
Sbjct 198092 CTCGACGATTTGCTGACC 198109
>seq21512
Length=824
Score = 87.8 bits (96), Expect = 5e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 378249 AGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTC 378308
||| || || ||||||||||| | ||| |||||||| |||| || |||||||| |||||
Sbjct 81 AGTCTTGACAGCAGTATCAATAAGACCCTCACGACCAGCCATGGCGTGGAAGAAGAATTC 140
Query 378309 AGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATC 378368
||||||| || |||| | | | || |||||| || || | || | || || |
Sbjct 141 GCTAGGAGTGAGGCCACGGAGATACGAGTTCTCAACGAAACCGCGGGCTTCAGGAGAGTA 200
Query 378369 ATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCC 378428
||||| || || | ||||| | || || | || || || | ||||| || |||||
Sbjct 201 ATCATCCTTGGTGAAGTGAGGCAGAGTGCGGTACTTGAAGCCGAAAGGAATACGCTTTCC 260
Query 378429 ATCAACATTCTGTTGACC 378446
|| || | || |||||
Sbjct 261 CTCGACGATTTGCTGACC 278
>seq18446
Length=73582
Score = 87.8 bits (96), Expect = 5e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 378249 AGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTC 378308
||| || || ||||||||||| | ||| |||||||| |||| || |||||||| |||||
Sbjct 51099 AGTCTTGACAGCAGTATCAATAAGACCCTCACGACCAGCCATGGCGTGGAAGAAGAATTC 51040
Query 378309 AGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATC 378368
||||||| || |||| | | | || |||||| || || | || | || || |
Sbjct 51039 GCTAGGAGTGAGGCCACGGAGATACGAGTTCTCAACGAAACCGCGGGCTTCAGGAGAGTA 50980
Query 378369 ATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCC 378428
||||| || || | ||||| | || || | || || || | ||||| || |||||
Sbjct 50979 ATCATCCTTGGTGAAGTGAGGCAGAGTGCGGTACTTGAAGCCGAAAGGAATACGCTTTCC 50920
Query 378429 ATCAACATTCTGTTGACC 378446
|| || | || |||||
Sbjct 50919 CTCGACGATTTGCTGACC 50902
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1514709229934043
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |