Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq24749 275 7e-69 seq27938 188 8e-43 seq891 105 7e-18 seq11514 87.8 2e-12 >seq24749 Length=740841 Score = 275 bits (304), Expect = 7e-69 Identities = 515/753 (68%), Gaps = 18/753 (2%) Strand=Plus/Plus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254 ||||| || || | |||||| || ||| || ||||||| |||||||||| || Sbjct 415694 ATGCGTGTTTCCGTCGGTATCTGGGGAGACAACGTTGAGCGTGTCATTGAGACGTACAAC 415753 Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314 | ||| | || | ||| || ||||| | || ||||| ||||||||||| ||| | Sbjct 415754 CTCATGTCCAGCAAATTCTTCACACACGCATCTCCTACCCTCTTCAACGCTGGCACGCCT 415813 Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374 || ||||| ||||| |||||||||||| | |||||||||||| || || || ||| Sbjct 415814 CAGGCTCAGCTGTCGTCCTGCTTCCTGGTTGACATGAAGGATGACAGCATTGAAGGTATC 415873 Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC 53434 ||||| || |||||| |||||| ||||||||| | | |||||||| ||| | || Sbjct 415874 TACGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATTGGTCTGAAC 415933 Query 53435 TGC--TCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 | ||| | ||||||| | ||| | || || || |||||| | | | Sbjct 415934 GTCCATCGCA--TCCGTGCCACTGGCTCTTACATTGCCGGCACCAACGGCACTTCAAACG 415991 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | ||| ||| ||||| |||||||||||||||||||| || ||||| ||||||| || Sbjct 415992 GCATCACGCCCATGCTTCGCGTCTTCAACAACACGGCGCGCTACGTTGACCAGGGCGGCA 416051 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 ||||| || | || ||||||||||| ||||| |||||||| || | | |||| Sbjct 416052 ACAAGCGTCCCGGCGCTTTTGCCATCTACCTTGAGCCATGGCACGCTGATGTCTTCGAGT 416111 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAG 53672 | || || || || ||| || || | || || | ||| || || || || | Sbjct 416112 TCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAAGTTCGCGCTCGCGATCTTTTCCTGG 416171 Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732 | |||||||| || || ||||||||| | || |||||| ||| || ||| || | Sbjct 416172 CCCTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAGAAGAACGGCGACTGGACTCTCA 416231 Query 53733 TGTGCCCGAACGAGTGCCCCGGCC-TCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATG 53791 ||||||| ||||||||||| |||| | | | || ||||||||| |||||| | | || Sbjct 416232 TGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTG-CTACGGTGACGAGTTTGAGGCCTTG 416290 Query 53792 TATCGGACGTAC------GCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAG 53845 || || |||| || | |||||||| |||| ||||||||| || Sbjct 416291 TACGAGAAGTACGAGAAGGCTGGCAAGGGCCGC------AAGACCATCAAGGCGCAGAAG 416344 Query 53846 GTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAG 53905 | ||| | || ||||| || ||| ||||| || | || | |||| ||||||| Sbjct 416345 CTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGCTCTACAAG 416404 Query 53906 GATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 ||| |||| |||||||||||||||||| Sbjct 416405 GATCACTGCAACCGCAAGAGCAACCAGAAGAAC 416437 Score = 132 bits (146), Expect = 5e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254 ||||| || || | |||||| || ||| || ||||||| |||||||||| || Sbjct 447728 ATGCGTGTGTCCGTTGGTATCTGGGGAGACAACGTTGAGCGTGTCATTGAGACGTACAAC 447669 Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314 | ||| | | || | ||| || |||||| | || ||||| ||||||||||| ||| Sbjct 447668 CTCATGTCCAACAAATTCTTCACACACGCCTCTCCTACCCTCTTCAACGCTGGCACGCCC 447609 Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374 || ||||| ||||| |||||||||||| | ||||||||||| || || || ||| Sbjct 447608 CAGGCTCAGCTGTCGTCCTGCTTCCTGGTCGACATGAAGGATGATAGCATTGAAGGTATC 447549 Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG 53427 ||||| || |||||| |||||| ||||||||| | | |||||||| || Sbjct 447548 TACGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATTGG 447496 Score = 118 bits (130), Expect = 1e-21 Identities = 302/446 (68%), Gaps = 23/446 (5%) Strand=Plus/Minus Query 55493 CTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCG 55552 || ||||||||||| ||||| || || || | |||||| | |||||||||||| Sbjct 447032 CTTCTCGTGGCGCCCATGCCCACGGCCAGTACCTCGCAGATCCTTGGCAACAACGAGTGC 446973 Query 55553 TTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATG 55612 |||||||| |||||| |||||||||||| |||||| || || || ||||| || | Sbjct 446972 TTCGAGCCTTACACGTCCAACATCTACCAGCGCCGTGTGCTCGCCGGCGAGTTC--CAGG 446915 Query 55613 ATCAACAAGCAC---CTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG-AT 55668 || ||| | | || |||||||||| | || ||| | || || Sbjct 446914 -TCGTCAACCCCTGGCTGCTCAAGGACCTTGTCGACATGGGTCTTTGGT-CTGATAGCAT 446857 Query 55669 CAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCAGAA---TCTGGAGATTCCTCTG 55723 |||| || || | ||| ||| || ||| ||||||| || | ||||| | Sbjct 446856 GAAGAACCGCATCAT-TGCAGAAAATGGT-TCCATCCAGAACATTCCCAACATTCC-CGC 446800 Query 55724 CGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACAT 55782 || | ||||| | ||| ||| || ||||||||| | ||| | | || | || Sbjct 446799 CGACATCAAGTCCCTGTACAAGACTGTCTGGGAGATTTCTCAGCGCACCGTCGTTCAGAT 446740 Query 55783 GAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAA 55842 | ||| ||||||||||| | |||||||||||| ||||| ||||||| |||| || | Sbjct 446739 GGCTGCCGATCGTGGTGCCTTCATCGACCAGTCTCAGTCCTTGAACATTCACATGAAGGA 446680 Query 55843 TCCTTCACTGGCCAAGTT---GAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAA 55899 ||| | ||| |||| | |||| |||||||| ||| |||||| || ||||| Sbjct 446679 CCCTACCATGGGCAAGATCACGAGC---ATGCACTTCGCCGGCTGGAAGCTTGGCCTCAA 446623 Query 55900 GACGGGTATGTACTATCTGCGGACCC 55925 ||| || |||||||| ||||| |||| Sbjct 446622 GACCGGCATGTACTACCTGCGCACCC 446597 Score = 107 bits (118), Expect = 2e-18 Identities = 300/447 (67%), Gaps = 25/447 (6%) Strand=Plus/Plus Query 55493 CTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCG 55552 || ||||||||||| ||||| || || || | |||||| | |||||||||||| Sbjct 416972 CTTCTCGTGGCGCCCATGCCCACGGCCAGTACCTCGCAGATCCTTGGCAACAACGAGTGC 417031 Query 55553 TTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATG 55612 |||||||| |||||| |||||||||||| |||||| || || || ||||| || | Sbjct 417032 TTCGAGCCTTACACGTCCAACATCTACCAGCGCCGTGTGCTCGCCGGCGAGTTC--CAGG 417089 Query 55613 ATCAACAAGCAC---CTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG-AT 55668 || ||| | | || ||||||| || | || ||| | || || Sbjct 417090 -TCGTCAACCCCTGGCTGCTCAAGGATCTTGTTGACATGGGTCTTTGGT-CTGATAGCAT 417147 Query 55669 CAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGG---AGATTCCTCT 55722 |||| || || |||| ||| || ||| ||||||| | | ||||| | Sbjct 417148 GAAGAATCGCATCATTGCCGAGAATGGT---TCCATCCAGAACATCCCCAACATTCC-CG 417203 Query 55723 GCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACA 55781 || | ||||| | ||| ||| || ||||||||| | ||| | | | | | Sbjct 417204 CCGACGTCAAGTCCCTGTACAAGACTGTCTGGGAGATTTCTCAGCGCACCGTTGTGCAGA 417263 Query 55782 TGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGA 55841 || ||| ||||||||||| | |||||||||||||||||| ||||||| |||| || Sbjct 417264 TGGCTGCCGATCGTGGTGCCTTCATCGACCAGTCCCAGTCCTTGAACATTCACATGAAGG 417323 Query 55842 ATCCTTCACTGGCCAAGTT---GAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCA 55898 | ||| | ||| |||| | |||| |||||||| ||| |||||| || |||| Sbjct 417324 ACCCTACCATGGGCAAGATCACGAGC---ATGCACTTCGCCGGCTGGAAGCTTGGCCTCA 417380 Query 55899 AGACGGGTATGTACTATCTGCGGACCC 55925 |||| || |||||||| ||||| |||| Sbjct 417381 AGACCGGCATGTACTACCTGCGCACCC 417407 >seq27938 Length=10276 Score = 188 bits (208), Expect = 8e-43 Identities = 395/585 (68%), Gaps = 18/585 (3%) Strand=Plus/Minus Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 || || || |||||||| || |||||| |||||| ||||||||| | | |||||| Sbjct 10273 ATTGAAGGTATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGT 10214 Query 53423 ATCGGTATCCACTGC--TCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACG 53480 || ||| | || | ||| | ||||||| | ||| | || || || |||| Sbjct 10213 ATTGGTCTGAACGTCCATCGCA--TCCGTGCCACTGGCTCTTACATTGCCGGCACCAACG 10156 Query 53481 GCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540 || | | || ||| ||| ||||| |||||||||||||||||||| || ||||| Sbjct 10155 GCACTTCAAACGGCATCACGCCCATGCTTCGCGTCTTCAACAACACGGCGCGCTACGTTG 10096 Query 53541 ACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600 ||||||| || ||||| || | || ||||||||||| ||||| |||||||| | Sbjct 10095 ACCAGGGCGGCAACAAGCGTCCCGGCGCTTTTGCCATCTACCTTGAGCCATGGCACGCTG 10036 Query 53601 ACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTG 53660 | | | ||||| || || || || ||| || || | || || | ||| || | Sbjct 10035 ATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAAGTTCGCGCTCGCG 9976 Query 53661 ACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGG 53720 | || || || |||||||| || || ||||||||| | || |||||| ||| | Sbjct 9975 ATCTTTTCCTGGCCCTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAGAAGAACGGCG 9916 Query 53721 AGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCC-TCCAGGGTGTCTACGGTGAGGAG 53779 | ||| || |||||||| ||||||||||| |||| | | | || ||||||||| ||| Sbjct 9915 ACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTG-CTACGGTGACGAG 9857 Query 53780 TTTAACGAGATGTATCGGACGTAC------GCAGTTCAGGGCCGCTACAAGAAGAAGGTC 53833 ||| | | |||| || |||| || | |||||||| |||| || Sbjct 9856 TTTGAGGCCTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCCGC------AAGACCATC 9803 Query 53834 AAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTAC 53893 ||||||| || | ||| | || ||||| || ||| ||||| || | || | | Sbjct 9802 AAGGCGCAGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTC 9743 Query 53894 ATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 ||| |||||||||| |||| |||||||||||||||||| Sbjct 9742 ATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAAC 9698 >seq891 Length=198929 Score = 105 bits (116), Expect = 7e-18 Identities = 295/450 (66%), Gaps = 2/450 (0%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || ||||| || || || || |||||| ||||| ||| || | ||| ||||| || | | Sbjct 115081 CCCGTACCAATACCATCGGCGCCGTTGCACAGAACCATGGGAATAATCGGGGCATAGACC 115022 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 | || || | | | | ||||| ||||| || || | || | |||| | Sbjct 115021 TTGGGTTCGATCGGCTTTCCGTCCTCCATTTGAACTTCCAGATTGGGCTCGTCAAGAACA 114962 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCA 152055 || ||| ||| | | ||| ||| |||||| ||| || |||| |||||| || Sbjct 114961 GAAAAGATCTTTCGGGCGAATGGAGACAAGCGCGTGTGGATATAACGGGGGCTGGCAGCG 114902 Query 152056 TCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115 || ||||| || || || | || || | ||| |||||||||| ||||| ||| Sbjct 114901 TCTGATCCACCGGCAAGACGAGAACCGAAGTTACCACTGGGCTCGAGGCAGTTGACATTG 114842 Query 152116 TTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCG 152175 || | || || || ||||| || | | ||||| || ||| | ||||||| Sbjct 114841 TTTGAACCGACAAAGTTCTGGGCGAGGCCAATGATCGTCTGTTGAAGAGACATTTCACCG 114782 Query 152176 TGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTC 152235 ||||| ||||| | || || | | || || ||||| | | | |||||| ||| | Sbjct 114781 TGGTGGTACGCGGCCTTTTCGGAAACATAACCGGCCAATTCCACGACCTTCTGGTCTTTG 114722 Query 152236 GTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTCC 152295 | ||||| |||||| || ||| | || ||||| ||||| ||||||| |||||| Sbjct 114721 ATGAGGTTTCTCTTGAAGCAAGCGAACATGACCTTCCGCTGACCAGGTTTCAGACCGTCA 114662 Query 152296 ACCACGTGA-GGAATCGAACGCTTGATGTC 152324 | || ||| ||||| |||||| | |||| Sbjct 114661 AGAAC-TGACGGAATGGAACGCATATTGTC 114633 >seq11514 Length=5315 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 55493 CTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCG 55552 || ||||||||||| ||||| || || || | |||||| | |||||||||||| Sbjct 143 CTTCTCGTGGCGCCCATGCCCACGGCCAGTACCTCGCAGATCCTTGGCAACAACGAGTGC 84 Query 55553 TTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTT 55605 |||||||| |||||| |||||||||||| |||||| || || || ||||| Sbjct 83 TTCGAGCCTTACACGTCCAACATCTACCAGCGCCGTGTGCTCGCCGGCGAGTT 31 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547023920343800