Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq24749 275 7e-69
seq27938 188 8e-43
seq891 105 7e-18
seq11514 87.8 2e-12
>seq24749
Length=740841
Score = 275 bits (304), Expect = 7e-69
Identities = 515/753 (68%), Gaps = 18/753 (2%)
Strand=Plus/Plus
Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254
||||| || || | |||||| || ||| || ||||||| |||||||||| ||
Sbjct 415694 ATGCGTGTTTCCGTCGGTATCTGGGGAGACAACGTTGAGCGTGTCATTGAGACGTACAAC 415753
Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314
| ||| | || | ||| || ||||| | || ||||| ||||||||||| ||| |
Sbjct 415754 CTCATGTCCAGCAAATTCTTCACACACGCATCTCCTACCCTCTTCAACGCTGGCACGCCT 415813
Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374
|| ||||| ||||| |||||||||||| | |||||||||||| || || || |||
Sbjct 415814 CAGGCTCAGCTGTCGTCCTGCTTCCTGGTTGACATGAAGGATGACAGCATTGAAGGTATC 415873
Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC 53434
||||| || |||||| |||||| ||||||||| | | |||||||| ||| | ||
Sbjct 415874 TACGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATTGGTCTGAAC 415933
Query 53435 TGC--TCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492
| ||| | ||||||| | ||| | || || || |||||| | | |
Sbjct 415934 GTCCATCGCA--TCCGTGCCACTGGCTCTTACATTGCCGGCACCAACGGCACTTCAAACG 415991
Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552
| ||| ||| ||||| |||||||||||||||||||| || ||||| ||||||| ||
Sbjct 415992 GCATCACGCCCATGCTTCGCGTCTTCAACAACACGGCGCGCTACGTTGACCAGGGCGGCA 416051
Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612
||||| || | || ||||||||||| ||||| |||||||| || | | ||||
Sbjct 416052 ACAAGCGTCCCGGCGCTTTTGCCATCTACCTTGAGCCATGGCACGCTGATGTCTTCGAGT 416111
Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAG 53672
| || || || || ||| || || | || || | ||| || || || || |
Sbjct 416112 TCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAAGTTCGCGCTCGCGATCTTTTCCTGG 416171
Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732
| |||||||| || || ||||||||| | || |||||| ||| || ||| || |
Sbjct 416172 CCCTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAGAAGAACGGCGACTGGACTCTCA 416231
Query 53733 TGTGCCCGAACGAGTGCCCCGGCC-TCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATG 53791
||||||| ||||||||||| |||| | | | || ||||||||| |||||| | | ||
Sbjct 416232 TGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTG-CTACGGTGACGAGTTTGAGGCCTTG 416290
Query 53792 TATCGGACGTAC------GCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAG 53845
|| || |||| || | |||||||| |||| ||||||||| ||
Sbjct 416291 TACGAGAAGTACGAGAAGGCTGGCAAGGGCCGC------AAGACCATCAAGGCGCAGAAG 416344
Query 53846 GTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAG 53905
| ||| | || ||||| || ||| ||||| || | || | |||| |||||||
Sbjct 416345 CTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGCTCTACAAG 416404
Query 53906 GATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938
||| |||| ||||||||||||||||||
Sbjct 416405 GATCACTGCAACCGCAAGAGCAACCAGAAGAAC 416437
Score = 132 bits (146), Expect = 5e-26
Identities = 169/233 (73%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254
||||| || || | |||||| || ||| || ||||||| |||||||||| ||
Sbjct 447728 ATGCGTGTGTCCGTTGGTATCTGGGGAGACAACGTTGAGCGTGTCATTGAGACGTACAAC 447669
Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314
| ||| | | || | ||| || |||||| | || ||||| ||||||||||| |||
Sbjct 447668 CTCATGTCCAACAAATTCTTCACACACGCCTCTCCTACCCTCTTCAACGCTGGCACGCCC 447609
Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374
|| ||||| ||||| |||||||||||| | ||||||||||| || || || |||
Sbjct 447608 CAGGCTCAGCTGTCGTCCTGCTTCCTGGTCGACATGAAGGATGATAGCATTGAAGGTATC 447549
Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG 53427
||||| || |||||| |||||| ||||||||| | | |||||||| ||
Sbjct 447548 TACGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATTGG 447496
Score = 118 bits (130), Expect = 1e-21
Identities = 302/446 (68%), Gaps = 23/446 (5%)
Strand=Plus/Minus
Query 55493 CTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCG 55552
|| ||||||||||| ||||| || || || | |||||| | ||||||||||||
Sbjct 447032 CTTCTCGTGGCGCCCATGCCCACGGCCAGTACCTCGCAGATCCTTGGCAACAACGAGTGC 446973
Query 55553 TTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATG 55612
|||||||| |||||| |||||||||||| |||||| || || || ||||| || |
Sbjct 446972 TTCGAGCCTTACACGTCCAACATCTACCAGCGCCGTGTGCTCGCCGGCGAGTTC--CAGG 446915
Query 55613 ATCAACAAGCAC---CTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG-AT 55668
|| ||| | | || |||||||||| | || ||| | || ||
Sbjct 446914 -TCGTCAACCCCTGGCTGCTCAAGGACCTTGTCGACATGGGTCTTTGGT-CTGATAGCAT 446857
Query 55669 CAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCAGAA---TCTGGAGATTCCTCTG 55723
|||| || || | ||| ||| || ||| ||||||| || | ||||| |
Sbjct 446856 GAAGAACCGCATCAT-TGCAGAAAATGGT-TCCATCCAGAACATTCCCAACATTCC-CGC 446800
Query 55724 CGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACAT 55782
|| | ||||| | ||| ||| || ||||||||| | ||| | | || | ||
Sbjct 446799 CGACATCAAGTCCCTGTACAAGACTGTCTGGGAGATTTCTCAGCGCACCGTCGTTCAGAT 446740
Query 55783 GAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAA 55842
| ||| ||||||||||| | |||||||||||| ||||| ||||||| |||| || |
Sbjct 446739 GGCTGCCGATCGTGGTGCCTTCATCGACCAGTCTCAGTCCTTGAACATTCACATGAAGGA 446680
Query 55843 TCCTTCACTGGCCAAGTT---GAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAA 55899
||| | ||| |||| | |||| |||||||| ||| |||||| || |||||
Sbjct 446679 CCCTACCATGGGCAAGATCACGAGC---ATGCACTTCGCCGGCTGGAAGCTTGGCCTCAA 446623
Query 55900 GACGGGTATGTACTATCTGCGGACCC 55925
||| || |||||||| ||||| ||||
Sbjct 446622 GACCGGCATGTACTACCTGCGCACCC 446597
Score = 107 bits (118), Expect = 2e-18
Identities = 300/447 (67%), Gaps = 25/447 (6%)
Strand=Plus/Plus
Query 55493 CTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCG 55552
|| ||||||||||| ||||| || || || | |||||| | ||||||||||||
Sbjct 416972 CTTCTCGTGGCGCCCATGCCCACGGCCAGTACCTCGCAGATCCTTGGCAACAACGAGTGC 417031
Query 55553 TTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATG 55612
|||||||| |||||| |||||||||||| |||||| || || || ||||| || |
Sbjct 417032 TTCGAGCCTTACACGTCCAACATCTACCAGCGCCGTGTGCTCGCCGGCGAGTTC--CAGG 417089
Query 55613 ATCAACAAGCAC---CTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG-AT 55668
|| ||| | | || ||||||| || | || ||| | || ||
Sbjct 417090 -TCGTCAACCCCTGGCTGCTCAAGGATCTTGTTGACATGGGTCTTTGGT-CTGATAGCAT 417147
Query 55669 CAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGG---AGATTCCTCT 55722
|||| || || |||| ||| || ||| ||||||| | | ||||| |
Sbjct 417148 GAAGAATCGCATCATTGCCGAGAATGGT---TCCATCCAGAACATCCCCAACATTCC-CG 417203
Query 55723 GCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACA 55781
|| | ||||| | ||| ||| || ||||||||| | ||| | | | | |
Sbjct 417204 CCGACGTCAAGTCCCTGTACAAGACTGTCTGGGAGATTTCTCAGCGCACCGTTGTGCAGA 417263
Query 55782 TGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGA 55841
|| ||| ||||||||||| | |||||||||||||||||| ||||||| |||| ||
Sbjct 417264 TGGCTGCCGATCGTGGTGCCTTCATCGACCAGTCCCAGTCCTTGAACATTCACATGAAGG 417323
Query 55842 ATCCTTCACTGGCCAAGTT---GAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCA 55898
| ||| | ||| |||| | |||| |||||||| ||| |||||| || ||||
Sbjct 417324 ACCCTACCATGGGCAAGATCACGAGC---ATGCACTTCGCCGGCTGGAAGCTTGGCCTCA 417380
Query 55899 AGACGGGTATGTACTATCTGCGGACCC 55925
|||| || |||||||| ||||| ||||
Sbjct 417381 AGACCGGCATGTACTACCTGCGCACCC 417407
>seq27938
Length=10276
Score = 188 bits (208), Expect = 8e-43
Identities = 395/585 (68%), Gaps = 18/585 (3%)
Strand=Plus/Minus
Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422
|| || || |||||||| || |||||| |||||| ||||||||| | | ||||||
Sbjct 10273 ATTGAAGGTATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGT 10214
Query 53423 ATCGGTATCCACTGC--TCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACG 53480
|| ||| | || | ||| | ||||||| | ||| | || || || ||||
Sbjct 10213 ATTGGTCTGAACGTCCATCGCA--TCCGTGCCACTGGCTCTTACATTGCCGGCACCAACG 10156
Query 53481 GCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540
|| | | || ||| ||| ||||| |||||||||||||||||||| || |||||
Sbjct 10155 GCACTTCAAACGGCATCACGCCCATGCTTCGCGTCTTCAACAACACGGCGCGCTACGTTG 10096
Query 53541 ACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600
||||||| || ||||| || | || ||||||||||| ||||| |||||||| |
Sbjct 10095 ACCAGGGCGGCAACAAGCGTCCCGGCGCTTTTGCCATCTACCTTGAGCCATGGCACGCTG 10036
Query 53601 ACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTG 53660
| | | ||||| || || || || ||| || || | || || | ||| || |
Sbjct 10035 ATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAAGTTCGCGCTCGCG 9976
Query 53661 ACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGG 53720
| || || || |||||||| || || ||||||||| | || |||||| ||| |
Sbjct 9975 ATCTTTTCCTGGCCCTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAGAAGAACGGCG 9916
Query 53721 AGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCC-TCCAGGGTGTCTACGGTGAGGAG 53779
| ||| || |||||||| ||||||||||| |||| | | | || ||||||||| |||
Sbjct 9915 ACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTG-CTACGGTGACGAG 9857
Query 53780 TTTAACGAGATGTATCGGACGTAC------GCAGTTCAGGGCCGCTACAAGAAGAAGGTC 53833
||| | | |||| || |||| || | |||||||| |||| ||
Sbjct 9856 TTTGAGGCCTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCCGC------AAGACCATC 9803
Query 53834 AAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTAC 53893
||||||| || | ||| | || ||||| || ||| ||||| || | || | |
Sbjct 9802 AAGGCGCAGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTC 9743
Query 53894 ATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938
||| |||||||||| |||| ||||||||||||||||||
Sbjct 9742 ATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAAC 9698
>seq891
Length=198929
Score = 105 bits (116), Expect = 7e-18
Identities = 295/450 (66%), Gaps = 2/450 (0%)
Strand=Plus/Minus
Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935
|| ||||| || || || || |||||| ||||| ||| || | ||| ||||| || | |
Sbjct 115081 CCCGTACCAATACCATCGGCGCCGTTGCACAGAACCATGGGAATAATCGGGGCATAGACC 115022
Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995
| || || | | | | ||||| ||||| || || | || | |||| |
Sbjct 115021 TTGGGTTCGATCGGCTTTCCGTCCTCCATTTGAACTTCCAGATTGGGCTCGTCAAGAACA 114962
Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCA 152055
|| ||| ||| | | ||| ||| |||||| ||| || |||| |||||| ||
Sbjct 114961 GAAAAGATCTTTCGGGCGAATGGAGACAAGCGCGTGTGGATATAACGGGGGCTGGCAGCG 114902
Query 152056 TCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115
|| ||||| || || || | || || | ||| |||||||||| ||||| |||
Sbjct 114901 TCTGATCCACCGGCAAGACGAGAACCGAAGTTACCACTGGGCTCGAGGCAGTTGACATTG 114842
Query 152116 TTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCG 152175
|| | || || || ||||| || | | ||||| || ||| | |||||||
Sbjct 114841 TTTGAACCGACAAAGTTCTGGGCGAGGCCAATGATCGTCTGTTGAAGAGACATTTCACCG 114782
Query 152176 TGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTC 152235
||||| ||||| | || || | | || || ||||| | | | |||||| ||| |
Sbjct 114781 TGGTGGTACGCGGCCTTTTCGGAAACATAACCGGCCAATTCCACGACCTTCTGGTCTTTG 114722
Query 152236 GTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTCC 152295
| ||||| |||||| || ||| | || ||||| ||||| ||||||| ||||||
Sbjct 114721 ATGAGGTTTCTCTTGAAGCAAGCGAACATGACCTTCCGCTGACCAGGTTTCAGACCGTCA 114662
Query 152296 ACCACGTGA-GGAATCGAACGCTTGATGTC 152324
| || ||| ||||| |||||| | ||||
Sbjct 114661 AGAAC-TGACGGAATGGAACGCATATTGTC 114633
>seq11514
Length=5315
Score = 87.8 bits (96), Expect = 2e-12
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 55493 CTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCG 55552
|| ||||||||||| ||||| || || || | |||||| | ||||||||||||
Sbjct 143 CTTCTCGTGGCGCCCATGCCCACGGCCAGTACCTCGCAGATCCTTGGCAACAACGAGTGC 84
Query 55553 TTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTT 55605
|||||||| |||||| |||||||||||| |||||| || || || |||||
Sbjct 83 TTCGAGCCTTACACGTCCAACATCTACCAGCGCCGTGTGCTCGCCGGCGAGTT 31
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547023920343800
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