Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq23861 102 7e-17 >seq23861 Length=270256 Score = 102 bits (112), Expect = 7e-17 Identities = 425/672 (63%), Gaps = 68/672 (10%) Strand=Plus/Plus Query 29848 TCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGC 29907 ||||||||||| ||||||||| |||| ||||| || |||| || ||||||||||| || Sbjct 129368 TCTGGGCTCCCGCTCGAGCTGTGTCTCCAGCGCATCGACGTGGTCGAGGTAGACGTGCGC 129427 Query 29908 GTCTCCCAGGTTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGT 29966 || |||| | || | || ||| || || | || || | | || ||||||| Sbjct 129428 ATCGCCCATGACATGCGTCAGGCTC-CCAGGGACCAGATCGCATGCACGCGCAATCATGT 129486 Query 29967 ACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACC 30026 ||| || || | |||||| || || || || || || ||||| |||||||| | |||| Sbjct 129487 GCGTCAGCAGCGCGTAGCTCGCAATATTGAACGGCACGCCGAGACCCATGTCACATGACC 129546 Query 30027 TCTGGTAGAGCTGACA------------CGAGAGCT----CTC--CGTC----------- 30057 ||||||||||| || | | ||| ||| |||| Sbjct 129547 GTTGGTAGAGCTGGCAGTGCAGGTGGCCCTTGGGCTTCTCCTCGGCGTCCTCGGCCGCGG 129606 Query 30058 -----GCTC--------------------ACGTAAAACTGAC---ACATGGCGTGGCACG 30089 |||| |||||||||||| ||||| ||||| | Sbjct 129607 CATTGGCTCTCCTGGCCCGCGGGTAGGAGACGTAAAACTGAGCAAACATG---TGGCAGG 129663 Query 30090 GAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGT 30149 | || || ||||| || || |||||||| |||| | ||||||||||| | Sbjct 129664 GCGGCAGCGCCATCTTCTTCAGGTGCGCCGGGTTCCATGCGCTGAGGATGATGCGCCGAT 129723 Query 30150 CTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCG 30209 | | || ||| || ||| || || | | |||||| || || || |||| Sbjct 129724 CGTACGGATTGGTCTTGAGCTTGTGGACAATCTCTGCCAGCTGGTCGACACCTTGTCCCG 129783 Query 30210 AGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACA 30269 |||||| | | || || ||||| || ||||| |||| ||| ||||| ||||| | Sbjct 129784 TGTAGTCCGTCGTCGCATCAACATACTCAGCACCGAAGTGCCGCCATTGGAAGCCGTAGA 129843 Query 30270 CCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGG 30329 | || || ||||| || |||| | ||| || ||| |||| | || || | | Sbjct 129844 CGGGACCGAGGTCGCCTACTTCGCGGTGTGAGAGTCCCACGCTGTCGAGGAACTCGCGCG 129903 Query 30330 AACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTG-GAC 30388 | |||||| ||||||||||||| | ||| ||| ||| | |||| ||| | Sbjct 129904 AGCCGTTGCCGTCCCAGATCTTGATGCCCGCCTCGCTCAGCGGTATGGACGACGTGCTGC 129963 Query 30389 CCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAA--AAGACCCTCTTGGTCG 30446 ||| | |||||||||| ||||| | |||||||| | || ||||| | ||| |||| Sbjct 129964 CCTGT-ACGAACCACAAAAGCTCGGCGACGACGGC--GCGAAGGAAGACGCGCTTTGTCG 130020 Query 30447 TGAGGAGGGGAA 30458 | || ||||||| Sbjct 130021 TCAGCAGGGGAA 130032 Score = 102 bits (112), Expect = 7e-17 Identities = 231/343 (67%), Gaps = 6/343 (2%) Strand=Plus/Plus Query 30119 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 30178 |||||||| |||| | ||||||||||| || | || ||| || ||| || || Sbjct 163414 GGGTTCCATGCGCTGAGGATGATGCGCCGATCGTACGGATTGGTCTTGAGCTTGTGGACA 163473 Query 30179 GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCT 30238 | | |||||| || || || |||| |||||| | | || || |||||| Sbjct 163474 ATCTCTGCCAGCTGGTCGACACCTTGACCCGTGTAGTCCGTCTTCGCATCAACGTACTCG 163533 Query 30239 GCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC 30298 || ||||| |||| ||| ||||| ||||| || || || ||||| || |||| | ||| Sbjct 163534 GCACCGAAGTGCCGCCATTGGAAGCCGTAGACGGGACCGAGGTCGCCTACTTCGCGGTGT 163593 Query 30299 TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCC 30358 || ||| |||| | || || | || |||||| ||||||||||||| | ||| Sbjct 163594 GAGAGTCCCACGCTGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGATGCCC 163653 Query 30359 TTCTCAGAGAGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCAC 30417 ||| ||| | |||| ||| |||| | || |||||||| ||||| | || Sbjct 163654 GCCTCGCTCAGCGGTATGGATGACGTGCTGCCCTGT-ACAAACCACAGAAGCTCGGCGAC 163712 Query 30418 GACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGGAA 30458 |||||| | || ||||| | ||| ||||| || ||||||| Sbjct 163713 GACGGC--GCGAAGGAAGACGCGCTTCGTCGTCAGCAGGGGAA 163753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406171345471452