Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq23972 134 1e-26
seq11113 131 1e-25
>seq23972
Length=267833
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || || || ||||| ||| |||| || | ||||| ||| | |||
Sbjct 225295 ATGCAAATCTTCGTCAAGACGCTCACCGGTAAGACTATCACATTGGAAGTCGAATCATCC 225354
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| |||| || | || || || || |||||||| || ||||| || |||||||||
Sbjct 225355 GACACGATCGACAATGTGAAGTCCAAGATCCAAGACAAGGAGGGCATTCCTCCCGATCAA 225414
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | || | ||| ||||| || | || ||| | ||| | || || ||||||
Sbjct 225415 CAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCTGACTACAAC 225474
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|| || |||||||||||| | |||||||| | ||| |||| |||||
Sbjct 225475 ATCCAGAAGGAGTCGACCCTGCATTTGGTCCTCCGTCTGCGTGGTGG 225521
Score = 131 bits (144), Expect = 1e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || || |||||||||||| | || |||||||| ||||| | |||
Sbjct 225067 ATGCAGATCTTTGTCAAGACGCTGACCGGCAAGACCATCACTCTTGAGGTGGAGTCTTCC 225126
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||| | ||||| || ||||| ||||| || || || || ||||| |||
Sbjct 225127 GACACCATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCAA 225186
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | ||| || || || | || || || || | ||||| ||||||
Sbjct 225187 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGTACTTTGTCCGACTACAAC 225246
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||| |||||||| || | || | ||| | || | || ||||| ||
Sbjct 225247 ATTCAGAAGGAGTCCACTCTTCACCTCGTTCTCCGCCTCCGTGGTGGTAT 225296
Score = 87.8 bits (96), Expect = 2e-12
Identities = 143/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071
||||||||| | || || ||||| || || | || ||| | || || | || ||
Sbjct 224863 ACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATCGACAACGTTAAGTCG 224922
Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131
|| || || ||||| || ||||| || ||||| |||||||| | || | ||| |||||
Sbjct 224923 AAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAACAGCGCCTGATTTTCGCTGGCAAG 224982
Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191
|| | || || | ||| | ||||| |||||||| || |||||||||||| | ||
Sbjct 224983 CAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCGACCCTCCAC 225042
Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217
| || | ||| | || ||||| ||
Sbjct 225043 CTTGTCCTCCGTCTTCGCGGTGGTAT 225068
>seq11113
Length=490148
Score = 131 bits (144), Expect = 1e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || || || ||||| ||| |||| || | ||||| ||| | |||
Sbjct 77445 ATGCAAATCTTCGTCAAGACACTCACCGGTAAGACTATCACATTGGAAGTCGAATCATCC 77386
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| |||| || | ||||| || || |||||||| || || || || ||||| |||
Sbjct 77385 GACACGATCGACAACGTCAAGTCCAAGATCCAAGACAAGGAGGGTATCCCTCCCGACCAA 77326
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | || | ||| ||||| || | || || || ||| | || || ||||||
Sbjct 77325 CAGCGCCTGATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACCCTGTCTGACTACAAC 77266
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|| || |||||||||||| | |||||||| | ||| |||| |||||
Sbjct 77265 ATCCAGAAGGAGTCGACCCTGCATTTGGTCCTCCGTCTGCGTGGTGG 77219
Score = 118 bits (130), Expect = 9e-22
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || ||||||||||||||| | || ||||| || || || | |||
Sbjct 77673 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACCATCACTCTCGAGGTTGAGTCTTCC 77614
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | ||||| || ||||| ||||| || || || || ||||| |||
Sbjct 77613 GACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCAA 77554
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | || | || || || || | || || || || | ||||| ||||||
Sbjct 77553 CAGCGCCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGTACTCTGTCCGACTACAAC 77494
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||| ||||||||||| | || | ||| | || | || ||||| ||
Sbjct 77493 ATTCAGAAGGAGTCGACTCTTCACCTCGTTCTCCGCCTTCGTGGTGGTAT 77444
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434765738205120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |