Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq23861 118 1e-21
seq23293 118 1e-21
>seq23861
Length=270256
Score = 118 bits (130), Expect = 1e-21
Identities = 155/212 (73%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 6499 GAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTT 6558
|||| | ||||| || |||||| || | ||||| || ||| |||| |||||
Sbjct 129353 GAGCAGCGGGAAATCTCTGGGCTCCCGCTCGAGCTGTGTCTCCAGCGCATCGACGTGGTC 129412
Query 6559 CAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCA-ACCCCACGA 6617
||||||| |||||||| |||| |||| ||| |||||| |||| | | || |
Sbjct 129413 GAGGTAGACGTGCGCATCGCCCATGACATGCGTCAGGCTCCCAGGGACCAGATCGCATG- 129471
Query 6618 CATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACC 6677
|| | || ||||||| ||| ||||| ||||| || ||||| ||||||||||| || | |
Sbjct 129472 CACGCGCAATCATGTGCGTCAGCAGCGCGTAGCTCGCAATATTGAACGGCACGCCGAGAC 129531
Query 6678 CCATGTCTCCCGATCGTTGATAGAGCTGGCAG 6709
||||||| | || ||||| ||||||||||||
Sbjct 129532 CCATGTCACATGACCGTTGGTAGAGCTGGCAG 129563
Score = 118 bits (130), Expect = 1e-21
Identities = 155/212 (73%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695
|||||||||||| ||||| || | |||||||| | || ||||||||||| ||||| ||
Sbjct 129563 CTGCCAGCTCTACCAACGGTCATGTGACATGGGTCTCGGCGTGCCGTTCAATATTGCGAG 129504
Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGT-TGGTTCCTGGGGAGCTGG 34754
||||| ||||| ||| ||||||| || | || | || | | |||| |||||| |||
Sbjct 129503 CTACGCGCTGCTGACGCACATGATTGCGCGTG-CATGCGATCTGGTCCCTGGGAGCCTGA 129445
Query 34755 TGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGC 34814
|||| |||| |||||||| ||||||| ||||| |||| ||| || ||||
Sbjct 129444 CGCATGTCATGGGCGATGCGCACGTCTACCTCGACCACGTCGATGCGCTGGAGACACAGC 129385
Query 34815 TGCAACGAGAGCCCCGACCGTTCCCCCAGCTC 34846
| | || |||||| || ||||| | ||||
Sbjct 129384 TCGAGCGGGAGCCCAGAGATTTCCCGCTGCTC 129353
Score = 118 bits (130), Expect = 1e-21
Identities = 155/212 (73%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 6499 GAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTT 6558
|||| | ||||| || |||||| || | ||||| || ||| |||| |||||
Sbjct 163074 GAGCAGCGGGAAATCTCTGGGCTCCCGCTCGAGCTGTGTCTCCAGCGCATCGACGTGGTC 163133
Query 6559 CAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCA-ACCCCACGA 6617
||||||| |||||||| |||| |||| ||| |||||| |||| | | || |
Sbjct 163134 GAGGTAGACGTGCGCATCGCCCATGACATGCGTCAGGCTCCCAGGGACCAGATCGCATG- 163192
Query 6618 CATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACC 6677
|| | || ||||||| ||| ||||| ||||| || ||||| ||||||||||| || | |
Sbjct 163193 CACGCGCAATCATGTGCGTCAGCAGCGCGTAGCTCGCAATATTGAACGGCACGCCGAGAC 163252
Query 6678 CCATGTCTCCCGATCGTTGATAGAGCTGGCAG 6709
||||||| | || ||||| ||||||||||||
Sbjct 163253 CCATGTCACATGACCGTTGGTAGAGCTGGCAG 163284
Score = 118 bits (130), Expect = 1e-21
Identities = 155/212 (73%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695
|||||||||||| ||||| || | |||||||| | || ||||||||||| ||||| ||
Sbjct 163284 CTGCCAGCTCTACCAACGGTCATGTGACATGGGTCTCGGCGTGCCGTTCAATATTGCGAG 163225
Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGT-TGGTTCCTGGGGAGCTGG 34754
||||| ||||| ||| ||||||| || | || | || | | |||| |||||| |||
Sbjct 163224 CTACGCGCTGCTGACGCACATGATTGCGCGTG-CATGCGATCTGGTCCCTGGGAGCCTGA 163166
Query 34755 TGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGC 34814
|||| |||| |||||||| ||||||| ||||| |||| ||| || ||||
Sbjct 163165 CGCATGTCATGGGCGATGCGCACGTCTACCTCGACCACGTCGATGCGCTGGAGACACAGC 163106
Query 34815 TGCAACGAGAGCCCCGACCGTTCCCCCAGCTC 34846
| | || |||||| || ||||| | ||||
Sbjct 163105 TCGAGCGGGAGCCCAGAGATTTCCCGCTGCTC 163074
Score = 91.5 bits (100), Expect = 1e-13
Identities = 190/276 (69%), Gaps = 8/276 (3%)
Strand=Plus/Plus
Query 6853 CAGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCGCCCCAA 6911
||||||||| | || || |||| ||||||| |||||| | || ||||| || || |
Sbjct 163482 CAGCTGGTCGACACCTTGACCCGTGTAGTCCGTCTTCGCATCAACG-TACTCGGCACCGA 163540
Query 6912 AGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACC 6971
|||| | ||| ||||| |||||||| || || | |||||| | || || || || |
Sbjct 163541 AGTGCCGCCATTGGAAGCCGTAGACGGGACCGAGGTCGCCTACTTCGCGGTGTGAGAGTC 163600
Query 6972 CC-CGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCA--CCCCCCGGG 7028
|| |||| ||| || || || || || |||| ||||||||||||| | ||| || |
Sbjct 163601 CCACGCT-GTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGATGCCCGCCTCG 163659
Query 7029 ACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGC 7088
|| | | ||| |||| ||| || |||||||| ||||| |||| |||
Sbjct 163660 CTCAGCGGT--ATGGATGACGTGCTGCCCTGTACAAACCACAGAAGCTCGGCGACGACGG 163717
Query 7089 CCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAA 7124
| | | || || |||||||||||||| ||||
Sbjct 163718 CGCGAAGGAAGACGCGCTTCGTCGTCAGCAGGGGAA 163753
Score = 91.5 bits (100), Expect = 1e-13
Identities = 190/276 (69%), Gaps = 8/276 (3%)
Strand=Plus/Minus
Query 34221 TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGT 34280
|||| |||||||||||||| || || | | | ||| |||| ||||| |||||||
Sbjct 163753 TTCCCCTGCTGACGACGAAGCGCGTCTTCCTTCGCGCCGTCGTCGCCGAGCTTCTGTGGT 163694
Query 34281 TCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGG--TGAAGATCTGGGA 34338
| || ||| |||| ||| | | || | || ||| | |||||||||||
Sbjct 163693 TTGTACAGGGCAGCACGTCATCCAT--ACCGCTGAGCGAGGCGGGCATCAAGATCTGGGA 163636
Query 34339 CGCTCACGGGTCTCGAGACTTTCTGGACAAGCG-GGGGTTCCCATCTCGGGAGGAGGGCG 34397
|| |||| || || || || || ||| |||| ||| || || || || | ||||
Sbjct 163635 CGGCAACGGCTCGCGCGAGTTCCTCGAC-AGCGTGGGACTCTCACACCGCGAAGTAGGCG 163577
Query 34398 ACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCG 34457
|| | || || |||||||| ||||| ||| | ||||| || || ||||| || | |||
Sbjct 163576 ACCTCGGTCCCGTCTACGGCTTCCAATGGCGGCACTTCGGTGCCGAGTA-CGTTGATGCG 163518
Query 34458 AAG-CGGACTATTCGGGACAGGGAGCGGACCAGCTG 34492
||| ||||||| |||| || || | |||||||||
Sbjct 163517 AAGACGGACTACACGGGTCAAGGTGTCGACCAGCTG 163482
Score = 86.0 bits (94), Expect = 6e-12
Identities = 189/276 (68%), Gaps = 8/276 (3%)
Strand=Plus/Plus
Query 6853 CAGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCGCCCCAA 6911
||||||||| | || ||||||| ||||||| | |||| | | |||||| || || |
Sbjct 129761 CAGCTGGTCGACACCTTGTCCCGTGTAGTCCGTCGTCGCATCAAC-ATACTCAGCACCGA 129819
Query 6912 AGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACC 6971
|||| | ||| ||||| |||||||| || || | |||||| | || || || || |
Sbjct 129820 AGTGCCGCCATTGGAAGCCGTAGACGGGACCGAGGTCGCCTACTTCGCGGTGTGAGAGTC 129879
Query 6972 CC-CGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCA--CCCCCCGGG 7028
|| |||| ||| || || || || || |||| ||||||||||||| | ||| || |
Sbjct 129880 CCACGCT-GTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGATGCCCGCCTCG 129938
Query 7029 ACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGC 7088
|| | | ||| |||| ||| |||||||||| ||||| |||| |||
Sbjct 129939 CTCAGCGGT--ATGGACGACGTGCTGCCCTGTACGAACCACAAAAGCTCGGCGACGACGG 129996
Query 7089 CCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAA 7124
| | | || || || ||||||||||| ||||
Sbjct 129997 CGCGAAGGAAGACGCGCTTTGTCGTCAGCAGGGGAA 130032
Score = 86.0 bits (94), Expect = 6e-12
Identities = 189/276 (68%), Gaps = 8/276 (3%)
Strand=Plus/Minus
Query 34221 TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGT 34280
|||| ||||||||||| || || || | | | ||| |||| ||||| ||||||
Sbjct 130032 TTCCCCTGCTGACGACAAAGCGCGTCTTCCTTCGCGCCGTCGTCGCCGAGCTTTTGTGGT 129973
Query 34281 TCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGG--TGAAGATCTGGGA 34338
|||| ||| |||| ||| | | || | || ||| | |||||||||||
Sbjct 129972 TCGTACAGGGCAGCACGTCGTCCAT--ACCGCTGAGCGAGGCGGGCATCAAGATCTGGGA 129915
Query 34339 CGCTCACGGGTCTCGAGACTTTCTGGACAAGCG-GGGGTTCCCATCTCGGGAGGAGGGCG 34397
|| |||| || || || || || ||| |||| ||| || || || || | ||||
Sbjct 129914 CGGCAACGGCTCGCGCGAGTTCCTCGAC-AGCGTGGGACTCTCACACCGCGAAGTAGGCG 129856
Query 34398 ACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCG 34457
|| | || || |||||||| ||||| ||| | ||||| || || |||||| | | |||
Sbjct 129855 ACCTCGGTCCCGTCTACGGCTTCCAATGGCGGCACTTCGGTGCTGAGTAT-GTTGATGCG 129797
Query 34458 AAG-CGGACTATTCGGGACAGGGAGCGGACCAGCTG 34492
| | ||||||| ||||||| || | |||||||||
Sbjct 129796 ACGACGGACTACACGGGACAAGGTGTCGACCAGCTG 129761
>seq23293
Length=363
Score = 118 bits (130), Expect = 1e-21
Identities = 155/212 (73%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 6499 GAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTT 6558
|||| | ||||| || |||||| || | ||||| || ||| |||| |||||
Sbjct 117 GAGCAGCGGGAAATCTCTGGGCTCCCGCTCGAGCTGTGTCTCCAGCGCATCGACGTGGTC 176
Query 6559 CAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCA-ACCCCACGA 6617
||||||| |||||||| |||| |||| ||| |||||| |||| | | || |
Sbjct 177 GAGGTAGACGTGCGCATCGCCCATGACATGCGTCAGGCTCCCAGGGACCAGATCGCATG- 235
Query 6618 CATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACC 6677
|| | || ||||||| ||| ||||| ||||| || ||||| ||||||||||| || | |
Sbjct 236 CACGCGCAATCATGTGCGTCAGCAGCGCGTAGCTCGCAATATTGAACGGCACGCCGAGAC 295
Query 6678 CCATGTCTCCCGATCGTTGATAGAGCTGGCAG 6709
||||||| | || ||||| ||||||||||||
Sbjct 296 CCATGTCACATGACCGTTGGTAGAGCTGGCAG 327
Score = 118 bits (130), Expect = 1e-21
Identities = 155/212 (73%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695
|||||||||||| ||||| || | |||||||| | || ||||||||||| ||||| ||
Sbjct 327 CTGCCAGCTCTACCAACGGTCATGTGACATGGGTCTCGGCGTGCCGTTCAATATTGCGAG 268
Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGT-TGGTTCCTGGGGAGCTGG 34754
||||| ||||| ||| ||||||| || | || | || | | |||| |||||| |||
Sbjct 267 CTACGCGCTGCTGACGCACATGATTGCGCGTG-CATGCGATCTGGTCCCTGGGAGCCTGA 209
Query 34755 TGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGC 34814
|||| |||| |||||||| ||||||| ||||| |||| ||| || ||||
Sbjct 208 CGCATGTCATGGGCGATGCGCACGTCTACCTCGACCACGTCGATGCGCTGGAGACACAGC 149
Query 34815 TGCAACGAGAGCCCCGACCGTTCCCCCAGCTC 34846
| | || |||||| || ||||| | ||||
Sbjct 148 TCGAGCGGGAGCCCAGAGATTTCCCGCTGCTC 117
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448105054294320
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