Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq23861 118 1e-21 seq23293 118 1e-21 >seq23861 Length=270256 Score = 118 bits (130), Expect = 1e-21 Identities = 155/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 6499 GAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTT 6558 |||| | ||||| || |||||| || | ||||| || ||| |||| ||||| Sbjct 129353 GAGCAGCGGGAAATCTCTGGGCTCCCGCTCGAGCTGTGTCTCCAGCGCATCGACGTGGTC 129412 Query 6559 CAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCA-ACCCCACGA 6617 ||||||| |||||||| |||| |||| ||| |||||| |||| | | || | Sbjct 129413 GAGGTAGACGTGCGCATCGCCCATGACATGCGTCAGGCTCCCAGGGACCAGATCGCATG- 129471 Query 6618 CATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACC 6677 || | || ||||||| ||| ||||| ||||| || ||||| ||||||||||| || | | Sbjct 129472 CACGCGCAATCATGTGCGTCAGCAGCGCGTAGCTCGCAATATTGAACGGCACGCCGAGAC 129531 Query 6678 CCATGTCTCCCGATCGTTGATAGAGCTGGCAG 6709 ||||||| | || ||||| |||||||||||| Sbjct 129532 CCATGTCACATGACCGTTGGTAGAGCTGGCAG 129563 Score = 118 bits (130), Expect = 1e-21 Identities = 155/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 |||||||||||| ||||| || | |||||||| | || ||||||||||| ||||| || Sbjct 129563 CTGCCAGCTCTACCAACGGTCATGTGACATGGGTCTCGGCGTGCCGTTCAATATTGCGAG 129504 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGT-TGGTTCCTGGGGAGCTGG 34754 ||||| ||||| ||| ||||||| || | || | || | | |||| |||||| ||| Sbjct 129503 CTACGCGCTGCTGACGCACATGATTGCGCGTG-CATGCGATCTGGTCCCTGGGAGCCTGA 129445 Query 34755 TGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGC 34814 |||| |||| |||||||| ||||||| ||||| |||| ||| || |||| Sbjct 129444 CGCATGTCATGGGCGATGCGCACGTCTACCTCGACCACGTCGATGCGCTGGAGACACAGC 129385 Query 34815 TGCAACGAGAGCCCCGACCGTTCCCCCAGCTC 34846 | | || |||||| || ||||| | |||| Sbjct 129384 TCGAGCGGGAGCCCAGAGATTTCCCGCTGCTC 129353 Score = 118 bits (130), Expect = 1e-21 Identities = 155/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 6499 GAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTT 6558 |||| | ||||| || |||||| || | ||||| || ||| |||| ||||| Sbjct 163074 GAGCAGCGGGAAATCTCTGGGCTCCCGCTCGAGCTGTGTCTCCAGCGCATCGACGTGGTC 163133 Query 6559 CAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCA-ACCCCACGA 6617 ||||||| |||||||| |||| |||| ||| |||||| |||| | | || | Sbjct 163134 GAGGTAGACGTGCGCATCGCCCATGACATGCGTCAGGCTCCCAGGGACCAGATCGCATG- 163192 Query 6618 CATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACC 6677 || | || ||||||| ||| ||||| ||||| || ||||| ||||||||||| || | | Sbjct 163193 CACGCGCAATCATGTGCGTCAGCAGCGCGTAGCTCGCAATATTGAACGGCACGCCGAGAC 163252 Query 6678 CCATGTCTCCCGATCGTTGATAGAGCTGGCAG 6709 ||||||| | || ||||| |||||||||||| Sbjct 163253 CCATGTCACATGACCGTTGGTAGAGCTGGCAG 163284 Score = 118 bits (130), Expect = 1e-21 Identities = 155/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 |||||||||||| ||||| || | |||||||| | || ||||||||||| ||||| || Sbjct 163284 CTGCCAGCTCTACCAACGGTCATGTGACATGGGTCTCGGCGTGCCGTTCAATATTGCGAG 163225 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGT-TGGTTCCTGGGGAGCTGG 34754 ||||| ||||| ||| ||||||| || | || | || | | |||| |||||| ||| Sbjct 163224 CTACGCGCTGCTGACGCACATGATTGCGCGTG-CATGCGATCTGGTCCCTGGGAGCCTGA 163166 Query 34755 TGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGC 34814 |||| |||| |||||||| ||||||| ||||| |||| ||| || |||| Sbjct 163165 CGCATGTCATGGGCGATGCGCACGTCTACCTCGACCACGTCGATGCGCTGGAGACACAGC 163106 Query 34815 TGCAACGAGAGCCCCGACCGTTCCCCCAGCTC 34846 | | || |||||| || ||||| | |||| Sbjct 163105 TCGAGCGGGAGCCCAGAGATTTCCCGCTGCTC 163074 Score = 91.5 bits (100), Expect = 1e-13 Identities = 190/276 (69%), Gaps = 8/276 (3%) Strand=Plus/Plus Query 6853 CAGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCGCCCCAA 6911 ||||||||| | || || |||| ||||||| |||||| | || ||||| || || | Sbjct 163482 CAGCTGGTCGACACCTTGACCCGTGTAGTCCGTCTTCGCATCAACG-TACTCGGCACCGA 163540 Query 6912 AGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACC 6971 |||| | ||| ||||| |||||||| || || | |||||| | || || || || | Sbjct 163541 AGTGCCGCCATTGGAAGCCGTAGACGGGACCGAGGTCGCCTACTTCGCGGTGTGAGAGTC 163600 Query 6972 CC-CGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCA--CCCCCCGGG 7028 || |||| ||| || || || || || |||| ||||||||||||| | ||| || | Sbjct 163601 CCACGCT-GTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGATGCCCGCCTCG 163659 Query 7029 ACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGC 7088 || | | ||| |||| ||| || |||||||| ||||| |||| ||| Sbjct 163660 CTCAGCGGT--ATGGATGACGTGCTGCCCTGTACAAACCACAGAAGCTCGGCGACGACGG 163717 Query 7089 CCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAA 7124 | | | || || |||||||||||||| |||| Sbjct 163718 CGCGAAGGAAGACGCGCTTCGTCGTCAGCAGGGGAA 163753 Score = 91.5 bits (100), Expect = 1e-13 Identities = 190/276 (69%), Gaps = 8/276 (3%) Strand=Plus/Minus Query 34221 TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGT 34280 |||| |||||||||||||| || || | | | ||| |||| ||||| ||||||| Sbjct 163753 TTCCCCTGCTGACGACGAAGCGCGTCTTCCTTCGCGCCGTCGTCGCCGAGCTTCTGTGGT 163694 Query 34281 TCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGG--TGAAGATCTGGGA 34338 | || ||| |||| ||| | | || | || ||| | ||||||||||| Sbjct 163693 TTGTACAGGGCAGCACGTCATCCAT--ACCGCTGAGCGAGGCGGGCATCAAGATCTGGGA 163636 Query 34339 CGCTCACGGGTCTCGAGACTTTCTGGACAAGCG-GGGGTTCCCATCTCGGGAGGAGGGCG 34397 || |||| || || || || || ||| |||| ||| || || || || | |||| Sbjct 163635 CGGCAACGGCTCGCGCGAGTTCCTCGAC-AGCGTGGGACTCTCACACCGCGAAGTAGGCG 163577 Query 34398 ACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCG 34457 || | || || |||||||| ||||| ||| | ||||| || || ||||| || | ||| Sbjct 163576 ACCTCGGTCCCGTCTACGGCTTCCAATGGCGGCACTTCGGTGCCGAGTA-CGTTGATGCG 163518 Query 34458 AAG-CGGACTATTCGGGACAGGGAGCGGACCAGCTG 34492 ||| ||||||| |||| || || | ||||||||| Sbjct 163517 AAGACGGACTACACGGGTCAAGGTGTCGACCAGCTG 163482 Score = 86.0 bits (94), Expect = 6e-12 Identities = 189/276 (68%), Gaps = 8/276 (3%) Strand=Plus/Plus Query 6853 CAGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCGCCCCAA 6911 ||||||||| | || ||||||| ||||||| | |||| | | |||||| || || | Sbjct 129761 CAGCTGGTCGACACCTTGTCCCGTGTAGTCCGTCGTCGCATCAAC-ATACTCAGCACCGA 129819 Query 6912 AGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACC 6971 |||| | ||| ||||| |||||||| || || | |||||| | || || || || | Sbjct 129820 AGTGCCGCCATTGGAAGCCGTAGACGGGACCGAGGTCGCCTACTTCGCGGTGTGAGAGTC 129879 Query 6972 CC-CGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCA--CCCCCCGGG 7028 || |||| ||| || || || || || |||| ||||||||||||| | ||| || | Sbjct 129880 CCACGCT-GTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGATGCCCGCCTCG 129938 Query 7029 ACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGC 7088 || | | ||| |||| ||| |||||||||| ||||| |||| ||| Sbjct 129939 CTCAGCGGT--ATGGACGACGTGCTGCCCTGTACGAACCACAAAAGCTCGGCGACGACGG 129996 Query 7089 CCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAA 7124 | | | || || || ||||||||||| |||| Sbjct 129997 CGCGAAGGAAGACGCGCTTTGTCGTCAGCAGGGGAA 130032 Score = 86.0 bits (94), Expect = 6e-12 Identities = 189/276 (68%), Gaps = 8/276 (3%) Strand=Plus/Minus Query 34221 TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGT 34280 |||| ||||||||||| || || || | | | ||| |||| ||||| |||||| Sbjct 130032 TTCCCCTGCTGACGACAAAGCGCGTCTTCCTTCGCGCCGTCGTCGCCGAGCTTTTGTGGT 129973 Query 34281 TCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGG--TGAAGATCTGGGA 34338 |||| ||| |||| ||| | | || | || ||| | ||||||||||| Sbjct 129972 TCGTACAGGGCAGCACGTCGTCCAT--ACCGCTGAGCGAGGCGGGCATCAAGATCTGGGA 129915 Query 34339 CGCTCACGGGTCTCGAGACTTTCTGGACAAGCG-GGGGTTCCCATCTCGGGAGGAGGGCG 34397 || |||| || || || || || ||| |||| ||| || || || || | |||| Sbjct 129914 CGGCAACGGCTCGCGCGAGTTCCTCGAC-AGCGTGGGACTCTCACACCGCGAAGTAGGCG 129856 Query 34398 ACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCG 34457 || | || || |||||||| ||||| ||| | ||||| || || |||||| | | ||| Sbjct 129855 ACCTCGGTCCCGTCTACGGCTTCCAATGGCGGCACTTCGGTGCTGAGTAT-GTTGATGCG 129797 Query 34458 AAG-CGGACTATTCGGGACAGGGAGCGGACCAGCTG 34492 | | ||||||| ||||||| || | ||||||||| Sbjct 129796 ACGACGGACTACACGGGACAAGGTGTCGACCAGCTG 129761 >seq23293 Length=363 Score = 118 bits (130), Expect = 1e-21 Identities = 155/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 6499 GAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTT 6558 |||| | ||||| || |||||| || | ||||| || ||| |||| ||||| Sbjct 117 GAGCAGCGGGAAATCTCTGGGCTCCCGCTCGAGCTGTGTCTCCAGCGCATCGACGTGGTC 176 Query 6559 CAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCA-ACCCCACGA 6617 ||||||| |||||||| |||| |||| ||| |||||| |||| | | || | Sbjct 177 GAGGTAGACGTGCGCATCGCCCATGACATGCGTCAGGCTCCCAGGGACCAGATCGCATG- 235 Query 6618 CATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACC 6677 || | || ||||||| ||| ||||| ||||| || ||||| ||||||||||| || | | Sbjct 236 CACGCGCAATCATGTGCGTCAGCAGCGCGTAGCTCGCAATATTGAACGGCACGCCGAGAC 295 Query 6678 CCATGTCTCCCGATCGTTGATAGAGCTGGCAG 6709 ||||||| | || ||||| |||||||||||| Sbjct 296 CCATGTCACATGACCGTTGGTAGAGCTGGCAG 327 Score = 118 bits (130), Expect = 1e-21 Identities = 155/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 |||||||||||| ||||| || | |||||||| | || ||||||||||| ||||| || Sbjct 327 CTGCCAGCTCTACCAACGGTCATGTGACATGGGTCTCGGCGTGCCGTTCAATATTGCGAG 268 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGT-TGGTTCCTGGGGAGCTGG 34754 ||||| ||||| ||| ||||||| || | || | || | | |||| |||||| ||| Sbjct 267 CTACGCGCTGCTGACGCACATGATTGCGCGTG-CATGCGATCTGGTCCCTGGGAGCCTGA 209 Query 34755 TGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGC 34814 |||| |||| |||||||| ||||||| ||||| |||| ||| || |||| Sbjct 208 CGCATGTCATGGGCGATGCGCACGTCTACCTCGACCACGTCGATGCGCTGGAGACACAGC 149 Query 34815 TGCAACGAGAGCCCCGACCGTTCCCCCAGCTC 34846 | | || |||||| || ||||| | |||| Sbjct 148 TCGAGCGGGAGCCCAGAGATTTCCCGCTGCTC 117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448105054294320