Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq11113 185 2e-41 seq26527 170 4e-37 seq23972 165 2e-35 seq22587 161 2e-34 seq20756 143 6e-29 seq1002 134 3e-26 seq25860 102 2e-16 seq27938 84.2 5e-11 seq24749 84.2 5e-11 >seq11113 Length=490148 Score = 185 bits (204), Expect = 2e-41 Identities = 174/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || ||||||||||| ||||| || || ||||| || || | || || Sbjct 77452 ACGAAGGCGGAGAACGAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGT 77511 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || |||||||| || || ||||| ||||| |||||||| ||||||| || Sbjct 77512 ACGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGGCGCTGTTGGTCGGGAGGAATACC 77571 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| ||||| || ||||| ||||||||||| || ||||||||||| Sbjct 77572 CTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCAACCTCGAG 77631 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| ||||| || || |||||||| ||||| | |||||| Sbjct 77632 AGTGATGGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 77673 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | || || || ||||| || |||||||| || || | ||||| | ||||| Sbjct 77234 AGGACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCC 77293 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| ||||| || ||||| |||||||| ||||| | || |||||||| Sbjct 77294 TCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCT 77353 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| ||||| || ||| || || | ||||| ||| Sbjct 77354 TGGATCTTGGACTTGACGTTGTCGATCGTGTCGGATGATTCGACTTCCAATGTGATAGTC 77413 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | ||||| Sbjct 77414 TTACCGGTGAGTGTCTTGACGAAGATTTGCAT 77445 >seq26527 Length=223112 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || | ||| || | ||||| Sbjct 222592 AGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCC 222651 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| |||||||| || || | || ||||||||| Sbjct 222652 TCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCC 222711 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| || || ||||| || ||||| ||| Sbjct 222712 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTC 222771 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| || || | |||||| Sbjct 222772 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 222803 >seq23972 Length=267833 Score = 165 bits (182), Expect = 2e-35 Identities = 156/199 (78%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | ||||||||||| || || ||||| || |||||||| || || | ||||| Sbjct 225059 CGAAGACGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTG 225000 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||| || ||||||||||| ||||| || ||||| |||||||| ||||| | || Sbjct 224999 CGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGGATGCCC 224940 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| || ||||| ||||||||||| ||| || ||||| || Sbjct 224939 TCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGG 224880 Query 211074 GTGATCGTCTTTCCCGTGA 211092 ||||| ||||| || |||| Sbjct 224879 GTGATGGTCTTGCCGGTGA 224861 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||||||||||||||| || || ||||| || || | | || | ||||| Sbjct 225278 AGAACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGACCATCC 225219 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || || |||||||| ||||||| || ||||||||| Sbjct 225218 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCCTCCTTGTCC 225159 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| || |||||||| || || ||||| |||||||| ||| Sbjct 225158 TGAATCTTCGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGAGTGATGGTC 225099 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 225098 TTGCCGGTCAGCGTCTTGACAAAGATCTGCAT 225067 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | || || || ||||| || |||||||| || || | ||||| | || || Sbjct 225506 AGGACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCC 225447 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| ||||| || ||||| ||||| || ||||||| || |||||||| Sbjct 225446 TCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGATCGGGAGGAATGCCCTCCTTGTCT 225387 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || ||||| ||||| || ||| || || | ||||| ||| Sbjct 225386 TGGATCTTGGACTTCACATTGTCGATCGTGTCGGATGATTCGACTTCCAATGTGATAGTC 225327 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | ||||| Sbjct 225326 TTACCGGTGAGCGTCTTGACGAAGATTTGCAT 225295 >seq22587 Length=423 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || | ||| || | ||||| Sbjct 297 AGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCC 238 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || || || ||||| |||||||| || || | || ||||||||| Sbjct 237 TCAAGCTGCTTGCCAGCAAAAATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCC 178 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| || || ||||| || ||||| ||| Sbjct 177 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTC 118 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| || || | |||||| Sbjct 117 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 86 >seq20756 Length=5129 Score = 143 bits (158), Expect = 6e-29 Identities = 135/172 (78%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 210921 GACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCG 210980 ||||| || |||||||| || || | ||||| | ||||| || ||||||||||| ||| Sbjct 4897 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCG 4956 Query 210981 AAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACG 211040 || || ||||| |||||||| ||||| | || ||||||||||||||||| || ||| Sbjct 4957 AAAATCAGGCGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTAACG 5016 Query 211041 TTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGA 211092 || ||||||||||| ||| || ||||| || ||||| ||||| || |||| Sbjct 5017 TTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGA 5068 >seq1002 Length=198801 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | | || | ||||| || ||||||||||| ||||| || Sbjct 118103 TTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATC 118162 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 ||||| ||||||||||| || | || ||||||||||||||||| || || || ||| Sbjct 118163 AGGCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 118222 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||| ||| || ||||| || ||||| ||||| ||||| || ||||| || || Sbjct 118223 ATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAA 118281 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | || || | ||||| || ||||||||||| ||||| || Sbjct 112547 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATC 112606 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 ||||| |||||||| || || | || ||||||||||||||||| || || || || Sbjct 112607 AGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCA 112666 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||| ||| || ||||| || ||||| ||||| ||||| || ||||| || || Sbjct 112667 ATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAA 112725 >seq25860 Length=735992 Score = 102 bits (112), Expect = 2e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 210984 ATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTT 211043 || ||||| |||||||| || || | || ||||||||||||||||| || || || Sbjct 34302 ATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 34243 Query 211044 TCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACA 211103 ||||||||||| || || ||||| || ||||| ||||| |||||||| ||||| || Sbjct 34242 TCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACG 34183 Query 211104 AACACCTGCAT 211114 || | |||||| Sbjct 34182 AAGATCTGCAT 34172 >seq27938 Length=10276 Score = 84.2 bits (92), Expect = 5e-11 Identities = 189/283 (67%), Gaps = 6/283 (2%) Strand=Plus/Plus Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGC 178144 |||| |||||| ||||||||||| | |||| | ||| ||||| |||||||| Sbjct 9693 CCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCA---GTGATCCTTGTAGAGCATGAAGGGG 9749 Query 178145 ATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTC 178204 | || ||| | |||||| |||| | | | |||||||| ||| || || ||| Sbjct 9750 TTGCCGGTCTCGGTCTGAGCCTCGAGGACGGCGTACCAAAGCTTCTGCGCCTTGATGGTC 9809 Query 178205 TTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAG 178264 || | | || || | ||||||||||| | ||| | |||| || || || ||| Sbjct 9810 TTGCGGCCCTTGCCAGCCTTCTCGTACTTCTCGTACAAGGCCTCAAACTCGTCACCGTAG 9869 Query 178265 ACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTC 178324 ||| | || || || ||| |||||||| | |||| |||| | |||| | || Sbjct 9870 CAGTCAGCAAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCG 9929 Query 178325 ACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAA 178367 || || ||||||||||| || | | |||| | ||| ||||| Sbjct 9930 ACACGCTTCATGAAGAGATCGGGGATCCACAGGGCCAGGAAAA 9972 >seq24749 Length=740841 Score = 84.2 bits (92), Expect = 5e-11 Identities = 190/283 (67%), Gaps = 6/283 (2%) Strand=Plus/Minus Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGC 178144 |||| |||||| ||||||||||| | |||| || ||| ||||| |||||||| Sbjct 416442 CCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAG-TG--ATCCTTGTAGAGCATGAAGGGG 416386 Query 178145 ATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTC 178204 | || ||| | |||||| |||| | | | |||||||| ||| || || ||| Sbjct 416385 TTGCCGGTCTCGGTCTGAGCCTCGAGGACGGCGTACCAAAGCTTCTGCGCCTTGATGGTC 416326 Query 178205 TTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAG 178264 || | | || || | ||||||||||| | ||| | |||| || || || ||| Sbjct 416325 TTGCGGCCCTTGCCAGCCTTCTCGTACTTCTCGTACAAGGCCTCAAACTCGTCACCGTAG 416266 Query 178265 ACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTC 178324 ||| | || || || ||| |||||||| | |||| |||| | |||| | || Sbjct 416265 CAGTCAGCAAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCG 416206 Query 178325 ACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAA 178367 || || ||||||||||| || | | |||| | ||| ||||| Sbjct 416205 ACACGCTTCATGAAGAGATCGGGGATCCACAGGGCCAGGAAAA 416163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158734951237565