Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq26527 149 1e-30
seq23972 149 1e-30
seq11113 143 6e-29
seq22587 140 8e-28
seq1002 134 3e-26
seq21251 123 6e-23
seq20756 118 3e-21
seq25860 87.8 4e-12
seq27938 86.0 1e-11
seq24749 86.0 1e-11
>seq26527
Length=223112
Score = 149 bits (164), Expect = 1e-30
Identities = 160/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || ||||| || ||||| || || |||| ||||| |||| | ||| | |||||
Sbjct 222592 AGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCC 222651
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||||||||| || || ||||||||||| || || || ||||||||
Sbjct 222652 TCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCC 222711
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| ||||||||||| || | ||||| || | ||||| |||
Sbjct 222712 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTC 222771
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|||||||| | || || | ||| | |||||
Sbjct 222772 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 222803
>seq23972
Length=267833
Score = 149 bits (164), Expect = 1e-30
Identities = 147/190 (77%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || ||||| |||||||| || || || | ||||| |||| |||||| | |||||
Sbjct 225278 AGAACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGACCATCC 225219
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||||||||| || || ||||||||||| |||||||| ||||||||
Sbjct 225218 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCCTCCTTGTCC 225159
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| ||| || || |||||||| || | ||||| || | ||||| |||
Sbjct 225158 TGAATCTTCGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGAGTGATGGTC 225099
Query 225682 TTGCCCGTCA 225691
||||| ||||
Sbjct 225098 TTGCCGGTCA 225089
Score = 143 bits (158), Expect = 6e-29
Identities = 150/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
||||| | |||||||||||||| || || || || |||| ||||| |||| || ||
Sbjct 225059 CGAAGACGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTG 225000
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| ||||| || |||||||| |||||||| || || || ||||||||||| || || ||
Sbjct 224999 CGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGGATGCCC 224940
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|||||||| |||||||| ||| || ||||||||||| |||| || || || |
Sbjct 224939 TCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGG 224880
Query 225673 GTGATCGTCTTGCCCGT 225689
||||| |||||||| ||
Sbjct 224879 GTGATGGTCTTGCCGGT 224863
Score = 131 bits (144), Expect = 4e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| | || || || || || || |||| ||||| || | || || | || ||
Sbjct 225506 AGGACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCC 225447
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| |||||||| || || || ||||| ||||| ||||| || |||||||||
Sbjct 225446 TCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGATCGGGAGGAATGCCCTCCTTGTCT 225387
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||||||| ||||| ||||| || | ||| || || || ||||| |||
Sbjct 225386 TGGATCTTGGACTTCACATTGTCGATCGTGTCGGATGATTCGACTTCCAATGTGATAGTC 225327
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || || | || || | ||| | ||||||
Sbjct 225326 TTACCGGTGAGCGTCTTGACGAAGATTTGCAT 225295
>seq11113
Length=490148
Score = 143 bits (158), Expect = 6e-29
Identities = 156/207 (75%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || || ||||| ||||| || || || || | ||||| |||| || |||
Sbjct 77452 ACGAAGGCGGAGAACGAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGT 77511
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||||| || |||||||| ||||| ||||| || || ||||||||||| ||||||||
Sbjct 77512 ACGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGGCGCTGTTGGTCGGGAGGAATACC 77571
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| || ||||| ||| || ||||||||||| || | || || || |
Sbjct 77572 CTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCAACCTCGAG 77631
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698
||||| |||||||| |||| ||| ||
Sbjct 77632 AGTGATGGTCTTGCCGGTCAGAGTCTT 77658
Score = 131 bits (144), Expect = 4e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| | || || || || || || |||| ||||| || | || || | |||||
Sbjct 77234 AGGACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCC 77293
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| |||||||| || || || ||||||||||| || ||||| |||||||||
Sbjct 77294 TCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCT 77353
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || ||||| ||||| || | ||| || || || ||||| |||
Sbjct 77354 TGGATCTTGGACTTGACGTTGTCGATCGTGTCGGATGATTCGACTTCCAATGTGATAGTC 77413
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || || | || || | ||| | ||||||
Sbjct 77414 TTACCGGTGAGTGTCTTGACGAAGATTTGCAT 77445
>seq22587
Length=423
Score = 140 bits (154), Expect = 8e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || ||||| || ||||| || || |||| ||||| |||| | ||| | |||||
Sbjct 297 AGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCC 238
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||| || || || || ||||||||||| || || || ||||||||
Sbjct 237 TCAAGCTGCTTGCCAGCAAAAATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCC 178
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| ||||||||||| || | ||||| || | ||||| |||
Sbjct 177 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTC 118
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|||||||| | || || | ||| | |||||
Sbjct 117 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 86
>seq1002
Length=198801
Score = 134 bits (148), Expect = 3e-26
Identities = 137/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
|| |||| ||||| |||| |||||| | ||||| || |||||||| || ||||| ||
Sbjct 118103 TTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATC 118162
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
|| || |||||||| || || || || |||||||| |||||||| ||| ||| |||
Sbjct 118163 AGGCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 118222
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704
|||||||| |||| ||||| || | ||||| ||||||||||||| || || | |||
Sbjct 118223 ATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAA 118281
Score = 129 bits (142), Expect = 1e-24
Identities = 136/179 (76%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
|| |||| ||||| |||| || ||| | ||||| || |||||||| || ||||| ||
Sbjct 112547 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATC 112606
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
|| || ||||||||||| || || || |||||||| |||||||| ||| ||| ||
Sbjct 112607 AGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCA 112666
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704
|||||||| |||| ||||| || | ||||| ||||||||||||| || || | |||
Sbjct 112667 ATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAA 112725
>seq21251
Length=37084
Score = 123 bits (136), Expect = 6e-23
Identities = 192/272 (71%), Gaps = 7/272 (3%)
Strand=Plus/Minus
Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATT 7500
|| ||||| ||||| |||| | || || || | ||||||| |||||| | |
Sbjct 7420 ACTTTATACTTAATTTTTGCTTTATTCTCAGGGTTATTAGGTACAGCTTTTTCTGTTTTA 7361
Query 7501 ATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATAT-TGAGTGGTAATAGCCAACTTT 7558
|| || ||||||||| | ||| ||| |||| |||| | || ||| |||| | |
Sbjct 7360 ATTAGATTAGAATTAAGCGGTCCAGGTGTTCAATATATCTCAG-----ATAACCAATTAT 7306
Query 7559 ACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTA 7618
| || ||||||||| || ||||| | | ||||| |||||| | |||||||| | |
Sbjct 7305 ATAATAGTATTATTACAGCTCATGCTATATTAATGATATTCTTTATGGTTATGCCTGCTT 7246
Query 7619 TGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTT 7678
| || || ||||| || |||| || | ||||||||| | |||| |||||||||||||
Sbjct 7245 TAATCGGAGGTTTTGGTAATTTCTTAATGCCTTTAATGGTAGGTGGGCCTGATATGGCTT 7186
Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTA 7710
| || || | || ||||| ||||| ||||||
Sbjct 7185 TCCCTAGATTAAATAATATCAGTTTCTGATTA 7154
>seq20756
Length=5129
Score = 118 bits (130), Expect = 3e-21
Identities = 128/170 (75%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 225520 GATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCG 225579
|| || || |||| ||||| |||| || || | ||||| || |||||||| ||||||
Sbjct 4897 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCG 4956
Query 225580 AAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACA 225639
|| || || || ||||||||||| || || || |||||||| |||||||| ||| ||
Sbjct 4957 AAAATCAGGCGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTAACG 5016
Query 225640 GCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
||||||||||| |||| || || || | ||||| |||||||| ||
Sbjct 5017 TTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 5066
>seq25860
Length=735992
Score = 87.8 bits (96), Expect = 4e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 225583 ATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCT 225642
|| || || ||||||||||| || || || |||||||| |||||||| ||| |||
Sbjct 34302 ATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 34243
Query 225643 TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATG 225702
||||||||||| || | ||||| || | ||||| ||||||||||| | || || | |
Sbjct 34242 TCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACG 34183
Query 225703 AACACTTGCAT 225713
|| | |||||
Sbjct 34182 AAGATCTGCAT 34172
>seq27938
Length=10276
Score = 86.0 bits (94), Expect = 1e-11
Identities = 182/272 (67%), Gaps = 0/272 (0%)
Strand=Plus/Plus
Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCC 193559
||||||||| |||| || | | || ||||||| |||||||| |||| |||
Sbjct 9702 TTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCG 9761
Query 193560 GCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTT 193619
| ||||| |||| | | | |||||| | || || || | ||| | | | ||||
Sbjct 9762 GTCTGAGCCTCGAGGACGGCGTACCAAAGCTTCTGCGCCTTGATGGTCTTGCGGCCCTTG 9821
Query 193620 CCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGA 193679
|| || |||||||||| ||||||| ||||||| || | |||||| || | ||
Sbjct 9822 CCAGCCTTCTCGTACTTCTCGTACAAGGCCTCAAACTCGTCACCGTAGCAGTCAGCAAGG 9881
Query 193680 CCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATG 193739
|| || || || ||||| | |||| |||| || || | | || || | |||||||
Sbjct 9882 CCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATG 9941
Query 193740 AAGAGGTCAGATGTCCAAATGGCGTAGAAAAG 193771
||||| || | |||| | ||| ||||||
Sbjct 9942 AAGAGATCGGGGATCCACAGGGCCAGGAAAAG 9973
>seq24749
Length=740841
Score = 86.0 bits (94), Expect = 1e-11
Identities = 182/272 (67%), Gaps = 0/272 (0%)
Strand=Plus/Minus
Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCC 193559
||||||||| |||| || | | || ||||||| |||||||| |||| |||
Sbjct 416433 TTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCG 416374
Query 193560 GCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTT 193619
| ||||| |||| | | | |||||| | || || || | ||| | | | ||||
Sbjct 416373 GTCTGAGCCTCGAGGACGGCGTACCAAAGCTTCTGCGCCTTGATGGTCTTGCGGCCCTTG 416314
Query 193620 CCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGA 193679
|| || |||||||||| ||||||| ||||||| || | |||||| || | ||
Sbjct 416313 CCAGCCTTCTCGTACTTCTCGTACAAGGCCTCAAACTCGTCACCGTAGCAGTCAGCAAGG 416254
Query 193680 CCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATG 193739
|| || || || ||||| | |||| |||| || || | | || || | |||||||
Sbjct 416253 CCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATG 416194
Query 193740 AAGAGGTCAGATGTCCAAATGGCGTAGAAAAG 193771
||||| || | |||| | ||| ||||||
Sbjct 416193 AAGAGATCGGGGATCCACAGGGCCAGGAAAAG 416162
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192102141808214
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