Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq23861 105 5e-18 >seq23861 Length=270256 Score = 105 bits (116), Expect = 5e-18 Identities = 232/343 (68%), Gaps = 6/343 (2%) Strand=Plus/Plus Query 27385 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 27444 |||||||| |||| | ||||||||||| || | || ||| || ||| || || Sbjct 163414 GGGTTCCATGCGCTGAGGATGATGCGCCGATCGTACGGATTGGTCTTGAGCTTGTGGACA 163473 Query 27445 GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCT 27504 | | |||||| || || || |||| |||||| | || || |||||| Sbjct 163474 ATCTCTGCCAGCTGGTCGACACCTTGACCCGTGTAGTCCGTCTTCGCATCAACGTACTCG 163533 Query 27505 GCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC 27564 || ||||| |||| ||||||||| ||||| || || || ||||| || |||| | ||| Sbjct 163534 GCACCGAAGTGCCGCCATTGGAAGCCGTAGACGGGACCGAGGTCGCCTACTTCGCGGTGT 163593 Query 27565 TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCC 27624 || ||| |||| | || || | || |||||| ||||||||||||| | ||| Sbjct 163594 GAGAGTCCCACGCTGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGATGCCC 163653 Query 27625 TTCTCGGAGAGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCAC 27683 |||| ||| | |||| ||| |||| | || |||||||| ||||| | || Sbjct 163654 GCCTCGCTCAGCGGTATGGATGACGTGCTGCCCTGT-ACAAACCACAGAAGCTCGGCGAC 163712 Query 27684 GACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGGAA 27724 |||||| | || ||||| | ||| ||||| || ||||||| Sbjct 163713 GACGGC--GCGAAGGAAGACGCGCTTCGTCGTCAGCAGGGGAA 163753 Score = 102 bits (112), Expect = 6e-17 Identities = 231/343 (67%), Gaps = 6/343 (2%) Strand=Plus/Plus Query 27385 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 27444 |||||||| |||| | ||||||||||| || | || ||| || ||| || || Sbjct 129693 GGGTTCCATGCGCTGAGGATGATGCGCCGATCGTACGGATTGGTCTTGAGCTTGTGGACA 129752 Query 27445 GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCT 27504 | | |||||| || || || |||| |||||| | || || ||||| Sbjct 129753 ATCTCTGCCAGCTGGTCGACACCTTGTCCCGTGTAGTCCGTCGTCGCATCAACATACTCA 129812 Query 27505 GCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC 27564 || ||||| |||| ||||||||| ||||| || || || ||||| || |||| | ||| Sbjct 129813 GCACCGAAGTGCCGCCATTGGAAGCCGTAGACGGGACCGAGGTCGCCTACTTCGCGGTGT 129872 Query 27565 TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCC 27624 || ||| |||| | || || | || |||||| ||||||||||||| | ||| Sbjct 129873 GAGAGTCCCACGCTGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGATGCCC 129932 Query 27625 TTCTCGGAGAGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCAC 27683 |||| ||| | |||| ||| |||| | |||||||||| ||||| | || Sbjct 129933 GCCTCGCTCAGCGGTATGGACGACGTGCTGCCCTGT-ACGAACCACAAAAGCTCGGCGAC 129991 Query 27684 GACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGGAA 27724 |||||| | || ||||| | ||| ||||| || ||||||| Sbjct 129992 GACGGC--GCGAAGGAAGACGCGCTTTGTCGTCAGCAGGGGAA 130032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369380740895111