Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq11113 170 4e-37 seq26527 168 1e-36 seq22587 168 1e-36 seq23972 161 2e-34 seq1002 134 3e-26 seq20756 125 1e-23 seq18890 100 6e-16 seq17 95.1 3e-14 seq25860 87.8 4e-12 seq16224 84.2 5e-11 >seq11113 Length=490148 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || |||| ||| | || || || |||||||||||||||| Sbjct 77219 CCACCACGCAGACGGAGGACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAC 77278 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| |||||||| || || || || || || |||| || |||||||| || Sbjct 77279 AGGGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGG 77338 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||||||||||||||| | || ||| | ||||| ||||| || | ||||||| Sbjct 77339 ATACCCTCCTTGTCTTGGATCTTGGACTTGACGTTGTCGATCGTGTCGGATGATTCGACT 77398 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| |||||||| || | ||||| ||||| || ||||| Sbjct 77399 TCCAATGTGATAGTCTTACCGGTGAGTGTCTTGACGAAGATTTGCAT 77445 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | || || || || ||||||||||| | Sbjct 77446 ACCACCACGAAGGCGGAGAACGAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGA 77505 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || |||||||| || || || || |||||||| | || |||||||| || Sbjct 77506 CAGAGTACGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGGCGCTGTTGGTCGGGAGG 77565 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| || ||||| | || ||| | ||||| ||||| |||| || || Sbjct 77566 AATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCAAC 77625 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||| ||||| || |||| |||||| || || |||||||| Sbjct 77626 CTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 77673 >seq26527 Length=223112 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || || || | ||| || || |||||||||||||| | Sbjct 222576 ACCACCACGCAGGCGGAGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 222635 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||||||||| || || || || || ||||||| || |||||||| || Sbjct 222636 AAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCGGGGGG 222695 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || || | ||||| ||||| || | || || Sbjct 222696 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCAC 222755 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| ||||| | ||||| ||||| |||||||| Sbjct 222756 CTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 222803 >seq22587 Length=423 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || || || | ||| || || |||||||||||||| | Sbjct 313 ACCACCACGCAGGCGGAGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 254 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||||||||| || || || || ||||| |||| || |||||||| || Sbjct 253 AAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATCAGGCGCTGTTGGTCGGGGGG 194 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || || | ||||| ||||| || | || || Sbjct 193 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCAC 134 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| ||||| | ||||| ||||| |||||||| Sbjct 133 CTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 86 >seq23972 Length=267833 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || |||| ||| | || || || |||||||||||||||| Sbjct 225521 CCACCACGCAGACGGAGGACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAC 225462 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| ||||| || || || || || || |||| || ||||| || ||| Sbjct 225461 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGATCGGGAGGA 225402 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||||||||||||||| | || || | ||||| ||||| || | ||||||| Sbjct 225401 ATGCCCTCCTTGTCTTGGATCTTGGACTTCACATTGTCGATCGTGTCGGATGATTCGACT 225342 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| |||||||| || | ||||| ||||| || ||||| Sbjct 225341 TCCAATGTGATAGTCTTACCGGTGAGCGTCTTGACGAAGATTTGCAT 225295 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | ||| || || || ||||||||||| | Sbjct 225294 ACCACCACGGAGGCGGAGAACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGA 225235 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || |||||||| || || || || || ||||| | ||| |||||||| || Sbjct 225234 CAAAGTACGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGG 225175 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| || ||||| | || ||| | || || ||||| |||| || || Sbjct 225174 AATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATGGTGTCGGAAGACTCCAC 225115 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| ||||| || |||| ||||| || || |||||||| Sbjct 225114 CTCAAGAGTGATGGTCTTGCCGGTCAGCGTCTTGACAAAGATCTGCAT 225067 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || || || || || | || || || |||||||||||||| | Sbjct 225066 ACCACCGCGAAGACGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 225007 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || || || |||| || |||||||| || Sbjct 225006 CAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGG 224947 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || ||| | ||||| |||||||| | ||||| Sbjct 224946 GATGCCCTCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATGGTGTCCGAGGACTCGAC 224887 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 || || ||||| ||||| || || Sbjct 224886 CTCAAGGGTGATGGTCTTGCCGGT 224863 >seq1002 Length=198801 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | | |||||||||||||| || || || ||||| || ||| Sbjct 118103 TTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATC 118162 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | || ||||||||| || || ||||||||||| |||||||| | || || | ||| Sbjct 118163 AGGCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 118222 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||| || | || || || || ||||| ||||| ||||||| ||||| ||||| Sbjct 118223 ATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAA 118281 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || |||||||||||||| || || || ||||| || ||| Sbjct 112547 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATC 112606 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | || |||||||| || || ||||||||||| |||||||| | || || | || Sbjct 112607 AGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCA 112666 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||| || | || || || || ||||| ||||| ||||||| ||||| ||||| Sbjct 112667 ATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAA 112725 >seq20756 Length=5129 Score = 125 bits (138), Expect = 1e-23 Identities = 128/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | || |||||||||||||| || || || || || || Sbjct 4900 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAA 4959 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| || |||||||| || || ||||||||||| |||||||| | || ||| | Sbjct 4960 ATCAGGCGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTAACGTTG 5019 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 ||||| |||||||| | ||||| || || ||||| ||||| || || Sbjct 5020 TCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 5066 >seq18890 Length=446397 Score = 100 bits (110), Expect = 6e-16 Identities = 302/460 (66%), Gaps = 16/460 (3%) Strand=Plus/Minus Query 229959 CGTCTCGTCGCGTGGGTGTGCGTTGAGGGTATTCTGTTCTCCGGGAGTTTCTGCGCCATC 230018 || |||||||| | | | |||||||||||| | ||| ||| ||| | ||||| Sbjct 160492 CGCCTCGTCGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATC 160433 Query 230019 TTTTGGCTACGCAACAAG---GGCGTCATGCCCGGGCTCGGTCTGTCGAACGAATTCATC 230075 || ||||| ||| ||| ||| ||||||| || || | | || ||||| ||||| Sbjct 160432 TTCTGGCT---CAAGAAGCGAGGCCTCATGCCTGGCCTGACTTTCTCCAACGAGCTCATC 160376 Query 230076 AGCAGGGACGAAGGTCTTCACCAGCAATTTGGCGAGGTCTTGTATTCGAAGCTAAAT--A 230133 | ||||| ||||||||| | | | || || | ||| | ||| || | | | Sbjct 160375 TCTCGTGACGAGGGTCTTCAC-ACCGACTTCGCTTG-TCTGCTGTTCT---CTCACTTGA 160321 Query 230134 ACAAACTACCTTTCGAA---ACGGTGAAACAAATCGTCACAGAAGTAGTTGCAAATGAAA 230190 |||| | || | | || || || | || ||||| || | || | ||| Sbjct 160320 ACAACCGCCCCAGCAAGCAGACTGTCCAAGACATTGTCACCGATGCTGTCAATATTGAGC 160261 Query 230191 AGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGG 230250 | |||||| | || ||| | || || | || |||||||||| ||| ||||||| Sbjct 160260 AAGAGTTCCTGACTGAGGCTCTCCCCTGTGGCCTGCTCGGCATGAACGCTACTCTCATGA 160201 Query 230251 GGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGT 230310 ||| || || || ||||| || || || | |||| || || || ||||||| || | Sbjct 160200 AGCAGTACATTGAGTTCGTTGCAGACCGCCTCCTCGTCGCCCTCGGCAACGAGAAGGTTT 160141 Query 230311 ATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACT 230370 | || | | ||||| |||| || |||||| |||||| || || || || |||| Sbjct 160140 ACAAGGCTACCAACCCATTCGACTTCATGGAGAACATTTCTCTTGGCGGCAAGACCAACT 160081 Query 230371 TCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGTGT 230410 ||||||| ||||||||| ||||| || | | | ||||| Sbjct 160080 TCTTCGAGAAGCGTGTCGCTGATTACCAGAAGGCTGGTGT 160041 >seq17 Length=218 Score = 95.1 bits (104), Expect = 3e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 230229 GGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTG 230288 |||||||| ||| ||||||| ||| || || || ||||| || || || | |||| Sbjct 218 GGCATGAACGCTACTCTCATGAAGCAGTACATTGAGTTCGTTGCAGACCGCCTCCTCGTC 159 Query 230289 GCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATT 230348 || || || ||||||| || || || | | ||||| |||| || |||||| |||| Sbjct 158 GCCCTCGGCAACGAGAAGGTTTACAAGGCTACCAACCCATTCGACTTCATGGAGAACATT 99 Query 230349 TCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGT 230408 || || || || || ||||||||||| ||||||||| ||||| || | | | ||| Sbjct 98 TCTCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGCTGATTACCAGAAGGCTGGT 39 Query 230409 GT 230410 || Sbjct 38 GT 37 >seq25860 Length=735992 Score = 87.8 bits (96), Expect = 4e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| || |||||||| || || ||||||||||| |||||||| | || || | Sbjct 34302 ATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 34243 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| || | || || || || ||||| ||||| ||||| | ||||| ||| Sbjct 34242 TCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACG 34183 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 34182 AAGATCTGCAT 34172 >seq16224 Length=81348 Score = 84.2 bits (92), Expect = 5e-11 Identities = 109/146 (75%), Gaps = 5/146 (3%) Strand=Plus/Minus Query 109939 GCAACATCATCAAATTGCGGGAACCCCCTAAAGCATATGATACCAAGGTTGATTGTGAAA 109998 || ||| | |||||||||||||| | |||||||| | | | |||| | | ||||||| Sbjct 65488 GCGACACCCTCAAATTGCGGGAAACTCCTAAAGCTCACGCT-CCAAAGCCGTCTGTGAAA 65430 Query 109999 GCA-TCAGCTGGCCGAG--AACAGAACTCGGGTATGGTAAAAATTCATATGATGCCACAA 110055 ||| | | ||||| | || | ||||||||| | || || | | ||||| |||| Sbjct 65429 GCAGTTCGGTGGCCAGGTTAATTGC-CTCGGGTATTGGAACAACGCGTGAGATGCAACAA 65371 Query 110056 TGGGCAATCCGCAGCCAAGCCTCTAA 110081 ||| |||||||||||||||||||||| Sbjct 65370 TGGACAATCCGCAGCCAAGCCTCTAA 65345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046362595992974