Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq26527 134 1e-26 seq22587 134 1e-26 seq23972 113 3e-20 seq1002 109 4e-19 seq11113 104 2e-17 seq20756 86.0 5e-12 seq25860 82.4 5e-11 >seq26527 Length=223112 Score = 134 bits (148), Expect = 1e-26 Identities = 160/215 (74%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| || ||| |||||| ||||||||||| |||| || ||| | || || Sbjct 222594 CACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTC 222653 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || || ||||||| ||||| || || | || | || ||||| ||| Sbjct 222654 AAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTG 222713 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| || ||| | |||||||||| || |||||||| | || || ||| Sbjct 222714 GATCTTGGACTTGACATTGT--CGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTC 222771 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 || |||||||||||||| |||||||| |||||||| Sbjct 222772 TTGCCCGTGAGGGTCTTGACGAAGATCTGCATGAT 222806 >seq22587 Length=423 Score = 134 bits (148), Expect = 1e-26 Identities = 160/215 (74%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| || ||| |||||| ||||||||||| |||| || ||| | || || Sbjct 295 CACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTC 236 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || ||||| |||| ||||| || || | || | || ||||| ||| Sbjct 235 AAGCTGCTTGCCAGCAAAAATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTG 176 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| || ||| | |||||||||| || |||||||| | || || ||| Sbjct 175 GATCTTGGACTTGACATTGT--CGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTC 118 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 || |||||||||||||| |||||||| |||||||| Sbjct 117 TTGCCCGTGAGGGTCTTGACGAAGATCTGCATGAT 83 >seq23972 Length=267833 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| ||||||||||| || | || ||| |||| || |||||||| || || || Sbjct 225486 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAA 225427 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 |||| ||||| ||||| | ||| | || ||||| || ||||| ||||| | Sbjct 225426 AATCAGGCGCTGTTGATCGGGAGGAATGCCCTCCTTGTCTTGGATCTTGGACTTCACATT 225367 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||||| ||||| || |||| || || ||||| || ||||| ||||| || Sbjct 225366 GTCGATCGTGTCGGATGATTCGACTTCCAATGTGATAGTCTTACCGGTGAGCGTCTTGAC 225307 Query 44326 GAAGATTTGCAT 44337 |||||||||||| Sbjct 225306 GAAGATTTGCAT 225295 Score = 89.7 bits (98), Expect = 4e-13 Identities = 134/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| ||||||||||| |||| || ||| | || || Sbjct 225047 ACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCA 224988 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || || |||| ||||| || || | ||| | || ||||| ||| Sbjct 224987 AGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGG 224928 Query 44249 ATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 |||||| ||| || ||| | |||||||| | ||| || ||||| | || || ||||| Sbjct 224927 ATCTTCGACTT-AACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTT 224869 Query 44308 TCCCGTGA 44315 || |||| Sbjct 224868 GCCGGTGA 224861 >seq1002 Length=198801 Score = 109 bits (120), Expect = 4e-19 Identities = 135/183 (74%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| || ||| | || || |||||||| ||||| || | Sbjct 112545 CCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAA 112604 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||| ||||| || || | || | || ||||| ||| |||||| ||| || ||| Sbjct 112605 TCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 112664 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | |||||||||| ||| |||||||| | || || ||||| ||||| |||||||| || Sbjct 112665 --CAATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGAC 112722 Query 44326 GAA 44328 ||| Sbjct 112723 GAA 112725 Score = 104 bits (114), Expect = 2e-17 Identities = 134/183 (73%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| | ||| | || || |||||||| ||||| || | Sbjct 118101 CCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAA 118160 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||| ||||| || || | || | || ||||| ||| |||||| ||| || ||| Sbjct 118161 TCAGGCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 118220 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | |||||||||| ||| |||||||| | || || ||||| ||||| |||||||| || Sbjct 118221 --CGATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGAC 118278 Query 44326 GAA 44328 ||| Sbjct 118279 GAA 118281 >seq11113 Length=490148 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| ||||||||||| || | || ||| | || || |||||||| || || || Sbjct 77254 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCCTCGAGCTGCTTGCCAGCGAA 77313 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 |||| ||||| || || | ||| | ||| ||||| || ||||| ||| | | Sbjct 77314 AATCAGGCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCTTGGATCTTGGACTTGACGTT 77373 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||||| ||||| || |||| || || ||||| || ||||| ||||| || Sbjct 77374 GTCGATCGTGTCGGATGATTCGACTTCCAATGTGATAGTCTTACCGGTGAGTGTCTTGAC 77433 Query 44326 GAAGATTTGCAT 44337 |||||||||||| Sbjct 77434 GAAGATTTGCAT 77445 >seq20756 Length=5129 Score = 86.0 bits (94), Expect = 5e-12 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| ||||||||||| |||| || ||| | || || |||||||| || || || Sbjct 4899 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAA 4958 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 |||| ||||| || || | ||| | || ||||| ||| |||||| ||| || || Sbjct 4959 AATCAGGCGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTT-AACGT 5017 Query 44266 T-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGA 44315 | | |||||||| | ||| || ||||| | || || ||||| || |||| Sbjct 5018 TGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGA 5068 >seq25860 Length=735992 Score = 82.4 bits (90), Expect = 5e-11 Identities = 101/136 (74%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATG 44264 |||| ||||| || || | || | || ||||| ||| ||||| ||| || || Sbjct 34302 ATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 34243 Query 44265 TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 | | |||||||||| || |||||||| | || || ||||| |||||||||||||| | Sbjct 34242 T--CGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGA 34185 Query 44325 CGAAGATTTGCATGAT 44340 ||||||| |||||||| Sbjct 34184 CGAAGATCTGCATGAT 34169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359867197897977