Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq26527 163 3e-35
seq22587 158 1e-33
seq23972 143 2e-29
seq1002 138 1e-27
seq11113 134 1e-26
seq20756 109 5e-19
seq10668 91.5 1e-13
seq25860 87.8 2e-12
>seq26527
Length=223112
Score = 163 bits (180), Expect = 3e-35
Identities = 177/233 (76%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692
|| || || || || || | ||| || ||||| ||| ||||||||| ||||| ||||||
Sbjct 222574 CCACCACCACGCAGGCGGAGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCG 222633
Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752
|| || ||||| | || || ||||||||||| ||||| ||||||||||||||||| | |
Sbjct 222634 GAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCGGGG 222693
Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACT 41810
|| | || |||||||||| ||| || ||| || | || | |||||| |||||
Sbjct 222694 GGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGACGACT 222751
Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||||||| | || || || || ||||| || ||||| ||||| |||||||||
Sbjct 222752 CCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 222804
>seq22587
Length=423
Score = 158 bits (174), Expect = 1e-33
Identities = 176/233 (76%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692
|| || || || || || | ||| || ||||| ||| ||||||||| ||||| ||||||
Sbjct 315 CCACCACCACGCAGGCGGAGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCG 256
Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752
|| || ||||| | || || ||||||||||| || || ||||||||||||||||| | |
Sbjct 255 GAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATCAGGCGCTGTTGGTCGGGG 196
Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACT 41810
|| | || |||||||||| ||| || ||| || | || | |||||| |||||
Sbjct 195 GGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGACGACT 138
Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||||||| | || || || || ||||| || ||||| ||||| |||||||||
Sbjct 137 CCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 85
>seq23972
Length=267833
Score = 143 bits (158), Expect = 2e-29
Identities = 170/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | |||| |||||| || ||||||||| ||||| ||||| ||
Sbjct 225521 CCACCACGCAGACGGAGGACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAC 225462
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| || ||||||||||| ||||| |||||||||||||| || | |||
Sbjct 225461 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGATCGGGAGGA 225402
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || ||||||||| ||| || |||| || | | | |||||| || || ||
Sbjct 225401 ATGCCCTCCTTGTCTTGGATCTTGGACTTC-ACATTGTCGATCGTGTCGGATGATTCGAC 225343
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| || || || ||||| || |||||||| ||||| || |||||
Sbjct 225342 TTCCAATGTGATAGTCTTACCGGTGAGCGTCTTGACGAAGATTTGCAT 225295
Score = 125 bits (138), Expect = 7e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | || || || || ||| ||||||||||||||| ||||||||
Sbjct 225293 CCACCACGGAGGCGGAGAACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAC 225234
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| || || | || || |||||||| || ||||| || || ||||||||||| | |||
Sbjct 225233 AAAGTACGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGGA 225174
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| | || | | ||| | | | |||||| ||||||||
Sbjct 225173 ATACCCTCCTTGTCC-TGAATCTTCGACTTGACGTTGTCAATGGTGTCGGAAGACTCCAC 225115
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | || || || || || ||||||||||| || || ||||||||
Sbjct 225114 CTCAAGAGTGATGGTCTTGCCGGTCAGCGTCTTGACAAAGATCTGCAT 225067
Score = 118 bits (130), Expect = 1e-21
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | || || || || || ||||||||| ||||| ||||||||
Sbjct 225065 CCACCGCGAAGACGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 225006
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || || ||||||||||| ||||| ||||||||||||||||| | ||
Sbjct 225005 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGG 224946
Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778
| || |||||||||| ||| ||
Sbjct 224945 ATGCCCTCCTTGTCCTGGATCTT 224923
>seq1002
Length=198801
Score = 138 bits (152), Expect = 1e-27
Identities = 142/183 (78%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||| ||||| |||||||| || ||||| | || |||||||||||||||||||| |
Sbjct 112545 CCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAA 112604
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792
|||||||||||||||| | ||| | || |||||||||| ||| || ||| || |
Sbjct 112605 TCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTT-GACATTG 112663
Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851
| | |||||| ||||||||||| | || || || || |||||||| ||||| |||
Sbjct 112664 TCAATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACG 112723
Query 41852 AAA 41854
|||
Sbjct 112724 AAA 112726
Score = 132 bits (146), Expect = 4e-26
Identities = 141/184 (77%), Gaps = 4/184 (2%)
Strand=Plus/Plus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||| ||||| |||||||| | ||||| | || || ||||||||||||||||| |
Sbjct 118101 CCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAA 118160
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790
|||||||||||||||| | ||| | || |||||||||| ||| || ||| || |
Sbjct 118161 TCAGGCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 118220
Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
|| | |||||| ||||||||||| | || || || || |||||||| ||||| ||
Sbjct 118221 CG--ATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGAC 118278
Query 41851 GAAA 41854
||||
Sbjct 118279 GAAA 118282
>seq11113
Length=490148
Score = 134 bits (148), Expect = 1e-26
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | |||| |||||| || ||||||||| ||||| ||||| ||
Sbjct 77219 CCACCACGCAGACGGAGGACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAC 77278
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || |||||||||||||| ||||| ||||||||||||||||| | ||
Sbjct 77279 AGGGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGG 77338
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | ||||||||| ||| || ||| ||| | | | |||||| || || ||
Sbjct 77339 ATACCCTCCTTGTCTTGGATCTTGGACTT-GACGTTGTCGATCGTGTCGGATGATTCGAC 77397
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| || || || ||||| || || ||||| ||||| || |||||
Sbjct 77398 TTCCAATGTGATAGTCTTACCGGTGAGTGTCTTGACGAAGATTTGCAT 77445
Score = 116 bits (128), Expect = 3e-21
Identities = 143/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
||||||||||||||| |||||||| || || || | || || |||||||| || || ||
Sbjct 77482 CTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCCTCAAGCTGCTTTCCAGCAAA 77541
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790
|| |||||||||||||| | |||| | |||||||||| ||| | || | | |||
Sbjct 77542 GATGAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCC-TGAATCTTGGACTTGACGT 77600
Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849
| | | |||||| ||||| ||||| | || || || || || ||||| ||||| |
Sbjct 77601 TGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTGA 77660
Query 41850 CGAAAATCTGCAT 41862
| || ||||||||
Sbjct 77661 CAAAGATCTGCAT 77673
>seq20756
Length=5129
Score = 109 bits (120), Expect = 5e-19
Identities = 89/108 (82%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
||||||||| ||||| |||||||| |||||||| | || || ||||||||||| |||||
Sbjct 4899 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAA 4958
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778
||||||||||||||||| | || | || |||||||||| ||| ||
Sbjct 4959 AATCAGGCGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTT 5006
>seq10668
Length=117041
Score = 91.5 bits (100), Expect = 1e-13
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859
|| ||||| || || || ||||||||| ||||||| |||||| |||||| || |||
Sbjct 90245 CGCATCGCCCCCCGCTCTGGCCTCGCCTCCAAGCACTTCATCGACACGGGCGCTGGCGTC 90304
Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912
|| || |||||||||||||| | |||| ||| | || |||||||||| |||
Sbjct 90305 ATTGATGCCGACTACCGCGGCCAGGTCAAGATCCTTCTGTTCAACCACGCCGA 90357
Score = 91.5 bits (100), Expect = 1e-13
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859
|| ||||| || || || ||||||||| ||||||| |||||| |||||| || |||
Sbjct 93880 CGCATCGCCCCCCGCTCTGGCCTCGCCTCCAAGCACTTCATCGACACGGGCGCTGGCGTC 93939
Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912
|| || |||||||||||||| | |||| ||| | || |||||||||| |||
Sbjct 93940 ATTGATGCCGACTACCGCGGCCAGGTCAAGATCCTGCTGTTCAACCACGCCGA 93992
>seq25860
Length=735992
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/134 (75%), Gaps = 4/134 (3%)
Strand=Plus/Minus
Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACG 41789
||||||||||||||||| | ||| | || |||||||||| ||| || ||| || |
Sbjct 34302 ATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 34243
Query 41790 ACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849
||| |||||| |||||||||||| | || || || || ||||| || ||||| |
Sbjct 34242 TCGATG--GTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGA 34185
Query 41850 CGAAAATCTGCATG 41863
|||| |||||||||
Sbjct 34184 CGAAGATCTGCATG 34171
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462141725517200
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