Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq26527 163 3e-35 seq22587 158 1e-33 seq23972 143 2e-29 seq1002 138 1e-27 seq11113 134 1e-26 seq20756 109 5e-19 seq10668 91.5 1e-13 seq25860 87.8 2e-12 >seq26527 Length=223112 Score = 163 bits (180), Expect = 3e-35 Identities = 177/233 (76%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || || || | ||| || ||||| ||| ||||||||| ||||| |||||| Sbjct 222574 CCACCACCACGCAGGCGGAGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCG 222633 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 || || ||||| | || || ||||||||||| ||||| ||||||||||||||||| | | Sbjct 222634 GAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCGGGG 222693 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACT 41810 || | || |||||||||| ||| || ||| || | || | |||||| ||||| Sbjct 222694 GGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGACGACT 222751 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||| | || || || || ||||| || ||||| ||||| ||||||||| Sbjct 222752 CCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 222804 >seq22587 Length=423 Score = 158 bits (174), Expect = 1e-33 Identities = 176/233 (76%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || || || | ||| || ||||| ||| ||||||||| ||||| |||||| Sbjct 315 CCACCACCACGCAGGCGGAGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCG 256 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 || || ||||| | || || ||||||||||| || || ||||||||||||||||| | | Sbjct 255 GAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATCAGGCGCTGTTGGTCGGGG 196 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACT 41810 || | || |||||||||| ||| || ||| || | || | |||||| ||||| Sbjct 195 GGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGACGACT 138 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||| | || || || || ||||| || ||||| ||||| ||||||||| Sbjct 137 CCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 85 >seq23972 Length=267833 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| |||||| || ||||||||| ||||| ||||| || Sbjct 225521 CCACCACGCAGACGGAGGACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAC 225462 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || ||||||||||| ||||| |||||||||||||| || | ||| Sbjct 225461 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGATCGGGAGGA 225402 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| ||| || |||| || | | | |||||| || || || Sbjct 225401 ATGCCCTCCTTGTCTTGGATCTTGGACTTC-ACATTGTCGATCGTGTCGGATGATTCGAC 225343 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || ||||| || |||||||| ||||| || ||||| Sbjct 225342 TTCCAATGTGATAGTCTTACCGGTGAGCGTCTTGACGAAGATTTGCAT 225295 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || || || ||| ||||||||||||||| |||||||| Sbjct 225293 CCACCACGGAGGCGGAGAACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAC 225234 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || || |||||||| || ||||| || || ||||||||||| | ||| Sbjct 225233 AAAGTACGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGTTGGTCGGGAGGA 225174 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| | || | | ||| | | | |||||| |||||||| Sbjct 225173 ATACCCTCCTTGTCC-TGAATCTTCGACTTGACGTTGTCAATGGTGTCGGAAGACTCCAC 225115 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || ||||||||||| || || |||||||| Sbjct 225114 CTCAAGAGTGATGGTCTTGCCGGTCAGCGTCTTGACAAAGATCTGCAT 225067 Score = 118 bits (130), Expect = 1e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | || || || || || ||||||||| ||||| |||||||| Sbjct 225065 CCACCGCGAAGACGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 225006 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| ||||| ||||||||||||||||| | || Sbjct 225005 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGG 224946 Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778 | || |||||||||| ||| || Sbjct 224945 ATGCCCTCCTTGTCCTGGATCTT 224923 >seq1002 Length=198801 Score = 138 bits (152), Expect = 1e-27 Identities = 142/183 (78%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| |||||||| || ||||| | || |||||||||||||||||||| | Sbjct 112545 CCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAA 112604 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||||||||||||||| | ||| | || |||||||||| ||| || ||| || | Sbjct 112605 TCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTT-GACATTG 112663 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | | |||||| ||||||||||| | || || || || |||||||| ||||| ||| Sbjct 112664 TCAATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACG 112723 Query 41852 AAA 41854 ||| Sbjct 112724 AAA 112726 Score = 132 bits (146), Expect = 4e-26 Identities = 141/184 (77%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| |||||||| | ||||| | || || ||||||||||||||||| | Sbjct 118101 CCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAA 118160 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 |||||||||||||||| | ||| | || |||||||||| ||| || ||| || | Sbjct 118161 TCAGGCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 118220 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | |||||| ||||||||||| | || || || || |||||||| ||||| || Sbjct 118221 CG--ATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGAC 118278 Query 41851 GAAA 41854 |||| Sbjct 118279 GAAA 118282 >seq11113 Length=490148 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| |||||| || ||||||||| ||||| ||||| || Sbjct 77219 CCACCACGCAGACGGAGGACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAC 77278 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || |||||||||||||| ||||| ||||||||||||||||| | || Sbjct 77279 AGGGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGG 77338 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| ||| || ||| ||| | | | |||||| || || || Sbjct 77339 ATACCCTCCTTGTCTTGGATCTTGGACTT-GACGTTGTCGATCGTGTCGGATGATTCGAC 77397 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || ||||| || || ||||| ||||| || ||||| Sbjct 77398 TTCCAATGTGATAGTCTTACCGGTGAGTGTCTTGACGAAGATTTGCAT 77445 Score = 116 bits (128), Expect = 3e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||||||||| |||||||| || || || | || || |||||||| || || || Sbjct 77482 CTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCCTCAAGCTGCTTTCCAGCAAA 77541 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 || |||||||||||||| | |||| | |||||||||| ||| | || | | ||| Sbjct 77542 GATGAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCC-TGAATCTTGGACTTGACGT 77600 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | | |||||| ||||| ||||| | || || || || || ||||| ||||| | Sbjct 77601 TGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTGCCGGTCAGAGTCTTGA 77660 Query 41850 CGAAAATCTGCAT 41862 | || |||||||| Sbjct 77661 CAAAGATCTGCAT 77673 >seq20756 Length=5129 Score = 109 bits (120), Expect = 5e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| |||||||| |||||||| | || || ||||||||||| ||||| Sbjct 4899 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAA 4958 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778 ||||||||||||||||| | || | || |||||||||| ||| || Sbjct 4959 AATCAGGCGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTT 5006 >seq10668 Length=117041 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859 || ||||| || || || ||||||||| ||||||| |||||| |||||| || ||| Sbjct 90245 CGCATCGCCCCCCGCTCTGGCCTCGCCTCCAAGCACTTCATCGACACGGGCGCTGGCGTC 90304 Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912 || || |||||||||||||| | |||| ||| | || |||||||||| ||| Sbjct 90305 ATTGATGCCGACTACCGCGGCCAGGTCAAGATCCTTCTGTTCAACCACGCCGA 90357 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859 || ||||| || || || ||||||||| ||||||| |||||| |||||| || ||| Sbjct 93880 CGCATCGCCCCCCGCTCTGGCCTCGCCTCCAAGCACTTCATCGACACGGGCGCTGGCGTC 93939 Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912 || || |||||||||||||| | |||| ||| | || |||||||||| ||| Sbjct 93940 ATTGATGCCGACTACCGCGGCCAGGTCAAGATCCTGCTGTTCAACCACGCCGA 93992 >seq25860 Length=735992 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/134 (75%), Gaps = 4/134 (3%) Strand=Plus/Minus Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACG 41789 ||||||||||||||||| | ||| | || |||||||||| ||| || ||| || | Sbjct 34302 ATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 34243 Query 41790 ACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 ||| |||||| |||||||||||| | || || || || ||||| || ||||| | Sbjct 34242 TCGATG--GTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGA 34185 Query 41850 CGAAAATCTGCATG 41863 |||| ||||||||| Sbjct 34184 CGAAGATCTGCATG 34171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462141725517200