Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq8958 143 6e-29 seq4446 134 3e-26 seq3921 123 5e-23 >seq8958 Length=8154 Score = 143 bits (158), Expect = 6e-29 Identities = 166/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 230414 AGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGG 230473 |||||||| | ||| ||| |||| ||| | || |||||||||||||| || ||| Sbjct 890 AGGAGTTCCTGACTGAGGCTCTTCCCTGTGGTCTGCTTGGCATGAACGCTACTCTCATGA 949 Query 230474 GACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGT 230533 |||||||| || ||||| || |||||| | | || || || || | ||||| || | Sbjct 950 AGCAGTACATTGAGTTCGTTGCAGACCGCCTCCTCGTCGCCCTCGGCAATGAGAAGGTTT 1009 Query 230534 ACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACT 230593 |||| | | ||||| |||| || |||||| |||||| ||| || |||||||||| Sbjct 1010 ACAAGGCAACCAACCCATTTGACTTCATGGAGAACATTTCTCTTGGCGGCAAGACCAACT 1069 Query 230594 TCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 ||||||| ||||||||| ||| || |||| | ||||||| ||| Sbjct 1070 TCTTCGAGAAGCGTGTCGCTGATTACCAGAAGGCTGGTGTCATG 1113 >seq4446 Length=444291 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGA 230475 |||||| | ||| ||| | || ||| |||| | |||||||||||| || ||| Sbjct 73368 GAGTTCCTGACTGAGGCTCTCCCCTGTGGCCTGCTCGGCATGAACGCTACTCTCATGAAG 73309 Query 230476 CAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTAC 230535 |||||||| || ||||| || |||||| | | || || || || | ||||| || ||| Sbjct 73308 CAGTACATTGAGTTCGTTGCAGACCGCCTCCTCGTCGCCCTCGGCAATGAGAAGGTTTAC 73249 Query 230536 AACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTC 230595 || | | ||||| |||| || |||||| |||||| ||| || |||||||||||| Sbjct 73248 AAGGCAACCAACCCATTTGACTTCATGGAGAACATTTCTCTTGGCGGCAAGACCAACTTC 73189 Query 230596 TTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 ||||| ||||||||| ||| || |||| | ||||||| ||| Sbjct 73188 TTCGAGAAGCGTGTCGCTGATTACCAGAAGGCTGGTGTCATG 73147 >seq3921 Length=218 Score = 123 bits (136), Expect = 5e-23 Identities = 139/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 230452 GGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTT 230511 |||||||||||| || ||| |||||||| || ||||| || |||||| | | || Sbjct 218 GGCATGAACGCTACTCTCATGAAGCAGTACATTGAGTTCGTTGCAGACCGCCTCCTCGTC 159 Query 230512 GCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATT 230571 || || || | ||||| || ||||| | | ||||| |||| || |||||| |||| Sbjct 158 GCCCTCGGCAATGAGAAGGTTTACAAGGCAACCAACCCATTTGACTTCATGGAGAACATT 99 Query 230572 TCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGT 230631 || ||| || ||||||||||||||||| ||||||||| ||| || |||| | ||||| Sbjct 98 TCTCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGCTGATTACCAGAAGGCTGGT 39 Query 230632 GTGATG 230637 || ||| Sbjct 38 GTCATG 33 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057303794552660