Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq8958 143 6e-29
seq4446 134 3e-26
seq3921 123 5e-23
>seq8958
Length=8154
Score = 143 bits (158), Expect = 6e-29
Identities = 166/224 (74%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 230414 AGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGG 230473
|||||||| | ||| ||| |||| ||| | || |||||||||||||| || |||
Sbjct 890 AGGAGTTCCTGACTGAGGCTCTTCCCTGTGGTCTGCTTGGCATGAACGCTACTCTCATGA 949
Query 230474 GACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGT 230533
|||||||| || ||||| || |||||| | | || || || || | ||||| || |
Sbjct 950 AGCAGTACATTGAGTTCGTTGCAGACCGCCTCCTCGTCGCCCTCGGCAATGAGAAGGTTT 1009
Query 230534 ACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACT 230593
|||| | | ||||| |||| || |||||| |||||| ||| || ||||||||||
Sbjct 1010 ACAAGGCAACCAACCCATTTGACTTCATGGAGAACATTTCTCTTGGCGGCAAGACCAACT 1069
Query 230594 TCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637
||||||| ||||||||| ||| || |||| | ||||||| |||
Sbjct 1070 TCTTCGAGAAGCGTGTCGCTGATTACCAGAAGGCTGGTGTCATG 1113
>seq4446
Length=444291
Score = 134 bits (148), Expect = 3e-26
Identities = 163/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGA 230475
|||||| | ||| ||| | || ||| |||| | |||||||||||| || |||
Sbjct 73368 GAGTTCCTGACTGAGGCTCTCCCCTGTGGCCTGCTCGGCATGAACGCTACTCTCATGAAG 73309
Query 230476 CAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTAC 230535
|||||||| || ||||| || |||||| | | || || || || | ||||| || |||
Sbjct 73308 CAGTACATTGAGTTCGTTGCAGACCGCCTCCTCGTCGCCCTCGGCAATGAGAAGGTTTAC 73249
Query 230536 AACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTC 230595
|| | | ||||| |||| || |||||| |||||| ||| || ||||||||||||
Sbjct 73248 AAGGCAACCAACCCATTTGACTTCATGGAGAACATTTCTCTTGGCGGCAAGACCAACTTC 73189
Query 230596 TTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637
||||| ||||||||| ||| || |||| | ||||||| |||
Sbjct 73188 TTCGAGAAGCGTGTCGCTGATTACCAGAAGGCTGGTGTCATG 73147
>seq3921
Length=218
Score = 123 bits (136), Expect = 5e-23
Identities = 139/186 (75%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 230452 GGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTT 230511
|||||||||||| || ||| |||||||| || ||||| || |||||| | | ||
Sbjct 218 GGCATGAACGCTACTCTCATGAAGCAGTACATTGAGTTCGTTGCAGACCGCCTCCTCGTC 159
Query 230512 GCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATT 230571
|| || || | ||||| || ||||| | | ||||| |||| || |||||| ||||
Sbjct 158 GCCCTCGGCAATGAGAAGGTTTACAAGGCAACCAACCCATTTGACTTCATGGAGAACATT 99
Query 230572 TCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGT 230631
|| ||| || ||||||||||||||||| ||||||||| ||| || |||| | |||||
Sbjct 98 TCTCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGCTGATTACCAGAAGGCTGGT 39
Query 230632 GTGATG 230637
|| |||
Sbjct 38 GTCATG 33
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057303794552660
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |