Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq4446 91.5 2e-13 seq37272 82.4 8e-11 >seq4446 Length=444291 Score = 91.5 bits (100), Expect = 2e-13 Identities = 176/259 (68%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 16502 TCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATT 16561 || ||||| |||||||| || ||||| || || ||||||||||||||||| | | Sbjct 123558 TCGGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAGCATCGAGCCTCAGGAACC 123617 Query 16562 TGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCA 16621 || || || | || || || | |||||||| || ||||| || || || ||| Sbjct 123618 TGGACCTCGGCACTGAAGCGCTCAACGAGGTTCTCGTTGACGATGCCATCTGAAGCGGCA 123677 Query 16622 AAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCA-----GATGTAAGAATATGCC 16676 || || || | ||||| ||||| || ||||| ||| ||| | | | || Sbjct 123678 AAGAAGGCAAGGATGTGTGAGATGAAGTACTTTTCATCATCATTGATCT--TGTTGTTCC 123735 Query 16677 AATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736 | || | | ||| || |||| ||| | ||||| | ||||| ||| |||| |||||| Sbjct 123736 AGTCGTGGAGATCCTTAGATAGATCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCTGCCT 123795 Query 16737 TTTTATACATTTTCCAAAT 16755 | || ||||||| |||||| Sbjct 123796 TCTTGTACATTTGCCAAAT 123814 >seq37272 Length=476240 Score = 82.4 bits (90), Expect = 8e-11 Identities = 175/259 (68%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 16502 TCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATT 16561 || ||||| |||||||| || ||||| || || ||||||||||||||||| | | Sbjct 445739 TCAGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGAACC 445798 Query 16562 TGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCA 16621 || || || | || || || | |||||||| || ||||| || || || ||| Sbjct 445799 TGGACCTCGGCACTGAAGCGCTCAACGAGGTTCTCGTTGACGATGCCATCTGAAGCGGCA 445858 Query 16622 AAAAACGCCAATATGTGCTTAATGAAATATTTT---TCGTCA--GATGTAAGAATATGCC 16676 || || || | ||||| ||||| || ||| |||||| ||| | | | || Sbjct 445859 AAGAAGGCAAGGATGTGTGAGATGAAGTACTTTTCATCGTCATTGATCT--TGTTGTTCC 445916 Query 16677 AATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736 | || | | ||| ||||| | ||| | ||||| | ||||| || ||| |||||| Sbjct 445917 AGTCGTGGAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAAGAAGCTTCTGCCT 445976 Query 16737 TTTTATACATTTTCCAAAT 16755 | || ||||||| |||||| Sbjct 445977 TCTTGTACATTTGCCAAAT 445995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511169036156240