Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq4446 91.5 2e-13
seq37272 82.4 8e-11
>seq4446
Length=444291
Score = 91.5 bits (100), Expect = 2e-13
Identities = 176/259 (68%), Gaps = 7/259 (3%)
Strand=Plus/Plus
Query 16502 TCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATT 16561
|| ||||| |||||||| || ||||| || || ||||||||||||||||| | |
Sbjct 123558 TCGGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAGCATCGAGCCTCAGGAACC 123617
Query 16562 TGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCA 16621
|| || || | || || || | |||||||| || ||||| || || || |||
Sbjct 123618 TGGACCTCGGCACTGAAGCGCTCAACGAGGTTCTCGTTGACGATGCCATCTGAAGCGGCA 123677
Query 16622 AAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCA-----GATGTAAGAATATGCC 16676
|| || || | ||||| ||||| || ||||| ||| ||| | | | ||
Sbjct 123678 AAGAAGGCAAGGATGTGTGAGATGAAGTACTTTTCATCATCATTGATCT--TGTTGTTCC 123735
Query 16677 AATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736
| || | | ||| || |||| ||| | ||||| | ||||| ||| |||| ||||||
Sbjct 123736 AGTCGTGGAGATCCTTAGATAGATCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCTGCCT 123795
Query 16737 TTTTATACATTTTCCAAAT 16755
| || ||||||| ||||||
Sbjct 123796 TCTTGTACATTTGCCAAAT 123814
>seq37272
Length=476240
Score = 82.4 bits (90), Expect = 8e-11
Identities = 175/259 (68%), Gaps = 7/259 (3%)
Strand=Plus/Plus
Query 16502 TCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATT 16561
|| ||||| |||||||| || ||||| || || ||||||||||||||||| | |
Sbjct 445739 TCAGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGAACC 445798
Query 16562 TGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCA 16621
|| || || | || || || | |||||||| || ||||| || || || |||
Sbjct 445799 TGGACCTCGGCACTGAAGCGCTCAACGAGGTTCTCGTTGACGATGCCATCTGAAGCGGCA 445858
Query 16622 AAAAACGCCAATATGTGCTTAATGAAATATTTT---TCGTCA--GATGTAAGAATATGCC 16676
|| || || | ||||| ||||| || ||| |||||| ||| | | | ||
Sbjct 445859 AAGAAGGCAAGGATGTGTGAGATGAAGTACTTTTCATCGTCATTGATCT--TGTTGTTCC 445916
Query 16677 AATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736
| || | | ||| ||||| | ||| | ||||| | ||||| || ||| ||||||
Sbjct 445917 AGTCGTGGAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAAGAAGCTTCTGCCT 445976
Query 16737 TTTTATACATTTTCCAAAT 16755
| || ||||||| ||||||
Sbjct 445977 TCTTGTACATTTGCCAAAT 445995
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511169036156240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |