Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq336 122 1e-22 seq31830 111 2e-19 seq7069 84.2 3e-11 >seq336 Length=177044 Score = 122 bits (134), Expect = 1e-22 Identities = 451/702 (64%), Gaps = 20/702 (3%) Strand=Plus/Minus Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 ||||| || || | || ||||| | | ||| || |||| | || || || ||||| Sbjct 110837 CCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATG 110778 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 |||||||| || ||||| | || | || ||||| | | | | ||||| || || Sbjct 110777 AAGAGATCGGGGATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCCTTGCCG 110718 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 ||||| || || |||||| | | | ||||| ||||| || || | ||| ||| Sbjct 110717 TGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATG 110658 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | | | | || || || ||||| || ||||| || | ||| | || ||||| || | Sbjct 110657 GCAAAAGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAG 110598 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 || | | ||| || | || || || || | || ||||| |||| || || ||| Sbjct 110597 ACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCA 110538 Query 54281 CTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCG 54340 ||||||| || | | ||||| || || || ||||| || ||||| | || Sbjct 110537 GTGGCACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCA 110478 Query 54341 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 54400 || || | || || ||||| || || || ||||||||| |||||| | || || Sbjct 110477 CAGGTCTTGAGGGTGTCGTAGATACCTTCAATGCTATCATCCTTCATGTCGACCAGGAAG 110418 Query 54401 CAGCTAGACATTTGGTGACGACTAG----TTCCCGCATTAAATAAGGTAGGAGAAGCGTG 54456 ||| |||| | ||| | || | | || || || || | ||||||||| ||||| Sbjct 110417 CAGGACGACA---GCTGA-GCCTGGGGCGTGCCAGCGTTGAAGAGGGTAGGAGAGGCGTG 110362 Query 54457 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGAT----AGCTGA--GTCTATATC 54510 || || |||| | || | || ||||||||||| || ||| | || | | || Sbjct 110361 TGTGAAGAATTTGTTGGACATGAGGTTGTACGTCTCAATGACACGCTCAACGT-TGTCTC 110303 Query 54511 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTT 54570 || || || || | |||||||| | ||||||||| || | || ||||||| Sbjct 110302 CC-----CAGATACCAACGGACACACGCATAATCATGTGCTGCGGGCGCTCGGCGATCTT 110248 Query 54571 GTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 54630 | || | || || | || || |||| ||| || || ||||| || | ||| Sbjct 110247 GCCGTCAAGCTTGAGGAGATAAGAGCGCTCCAGAGTCTTGAAGCCAAAGTATTGGTAGTT 110188 Query 54631 AAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTT 54672 ||||| || ||||| | ||| | |||| ||| | ||||| Sbjct 110187 GAAGTCACGATCGTAGACAATGGCAGAGTCGAGCTCCTCCTT 110146 >seq31830 Length=311768 Score = 111 bits (122), Expect = 2e-19 Identities = 445/698 (64%), Gaps = 12/698 (2%) Strand=Plus/Plus Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 ||||| || || | || ||||| | | ||| || |||| | || || || ||||| Sbjct 111173 CCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATG 111232 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 |||||||| || ||||| | || | || ||||| | | | | ||||| || || Sbjct 111233 AAGAGATCGGGGATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCCTTGCCG 111292 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 ||||| || || |||||| | | | ||||| ||||| || || | ||| ||| Sbjct 111293 TGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATG 111352 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | | | | || || || ||||| || ||||| || | ||| | || ||||| || | Sbjct 111353 GCAAAAGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAG 111412 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 || | | ||| || | || || || || | || ||||| |||| || || ||| Sbjct 111413 ACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCA 111472 Query 54281 CTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCG 54340 ||||||| || | | ||||| || || || ||||| || ||||| | || Sbjct 111473 GTGGCACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCA 111532 Query 54341 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 54400 || || | || || ||||| || || || || |||||| |||||| || || || Sbjct 111533 CAGGTCTTGAGGGTGTCGTAGATACCTTCAATGCTGTCATCCTTCATGTCAACCAGGAAG 111592 Query 54401 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 54460 ||| |||| || || || || || || || | ||||||||| ||||| || Sbjct 111593 CAGGACGACAGCTGAGCCTGAGGCGTGCCAGCGTTGAAGAGGGTAGGAGATGCGTGTGTG 111652 Query 54461 AACCATTTTTCAGAAAGTAGATTGTACGTCTCGAT----AGCTGA--GTCTATATCCCAT 54514 || |||| || | || ||||||||||| || ||| | || | | |||| Sbjct 111653 AAGAATTTGCTGGACATGAGGTTGTACGTCTCAATGACACGCTCAACGT-TGTCTCCC-- 111709 Query 54515 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 54574 || || || | |||||||| | ||||||||| || | || | |||||| | Sbjct 111710 ---CAGATACCGACGGAAACACGCATAATCATGTGCTGCGGGCGCTCGGCAATCTTGCCG 111766 Query 54575 TTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 54634 | | || || | ||||| |||| || || || ||||| || | ||| ||| Sbjct 111767 TCAAGCTTGAGGAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGAAG 111826 Query 54635 TCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTT 54672 || || ||||| | ||| | |||| || | ||||| Sbjct 111827 TCACGGTCGTAGACAATGGCCGAGTCAAGCTCCTCCTT 111864 >seq7069 Length=10009 Score = 84.2 bits (92), Expect = 3e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185 |||| || ||| |||||||| ||| ||||||||||| | | || | |||||||| Sbjct 237 AACAGCAGACAAGCGAAATCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAG 178 Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245 || || || || ||||| ||||| ||||| || ||||| || || || || || | ||| Sbjct 177 AAAGTCAGGCCAGGCATGAGGCCTCGCTTCTTGAGCCAGAAGATTGAGGCGAAGGCACCA 118 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAA 24279 ||||| || || || || |||| || |||| Sbjct 117 CTGAAGAAGATACCCTCAACGACCGCGAAAGCAA 84 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593436747219360