Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq669 174 2e-38 seq33151 104 3e-17 >seq669 Length=171934 Score = 174 bits (192), Expect = 2e-38 Identities = 519/795 (65%), Gaps = 77/795 (10%) Strand=Plus/Plus Query 145537 TAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTCC 145596 || |||| ||||| ||||| || | | ||| |||| || |||| | | |||||||| Sbjct 135026 TAAACCGACATCTTCATGGCAATCGTCTTGTGAGGGTCATACCCCTTGACCACAAAGTCC 135085 Query 145597 TCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGG----ATCCTGAGCCT-GGGAA 145651 || ||| | || | || ||||| | |||||||| | ||| |||| ||||| Sbjct 135086 TCTGCCTTCCAGCCGTCAATGTCA-CAGCCCGCCTCGCGCGTCATCTCGAGCAGCGGGAA 135144 Query 145652 AGGGCCGGGGGCTCCTGGTC-AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACG 145710 | | ||||||| | || ||||| || ||| | | || |||| |||||||||| Sbjct 135145 AT--CTTTGGGCTCCCGCTCGAGCTGTGTCTCCAGCGCACCGACATGGTCGAGGTAGACG 135202 Query 145711 TGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCC-CGTGAGGTGGGCGAC 145769 ||||| || |||| ||| || | | | ||| || | || | | || | || | Sbjct 135203 TGCGCATCGCCCATGACATGCGTCAGGCTCCCAGGGACCAGATCGCATGCAC-GCGCAAT 135261 Query 145770 CATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCC 145829 ||||| |||||||| | |||||| || || ||||| ||||| || || |||||||| | Sbjct 135262 CATGTGCGTCAGCAGCGCGTAGCTCGCAATATTGAACGGCACGCCGAGACCCATGTCACA 135321 Query 145830 CGAGCGCTGGTACAGCTGGCA---------------------------GGAGA------- 145855 || || ||||| |||||||| || | Sbjct 135322 TGACCGTTGGTAGAGCTGGCAGTGCAGGTGGCCCTTGGGCTTCTCCTCGGCGTCCTCGGC 135381 Query 145856 ----------GCTCCCC--GCCCGCC--------ACGTAGAACTG-GCACAGGAGGTGGC 145894 |||| || |||||| ||||| ||||| ||| | | ||||| Sbjct 135382 CGCGGCATTGGCTCTCCTGGCCCGCGGGTAGGAGACGTAAAACTGAGCAAAC-ATGTGGC 135440 Query 145895 AGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCC 145954 |||||||||| ||||| ||||| |||||||||||| ||| |||||| || | || Sbjct 135441 AGGGCGGCAGCGCCATCTTCTTCAGGTGCGCCGGGTTCCATGCGCTGAGGATGATGCGCC 135500 Query 145955 TGCTC-TCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTG--AGCTGGTCCACGCCCT 146011 | || | || || |||||| || | | || ||| |||||||| || || | Sbjct 135501 -GATCGTACGGATTGGTCTTGAGCTTGTGGACAA--TCTCTGCCAGCTGGTCGACACCTT 135557 Query 146012 GCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACC 146071 | ||| ||| || ||||| | || |||||| |||| |||||||||| ||| ||||| | Sbjct 135558 GACCCGTGTAGTCCGTCTTCGCATCAACGTACTCGGCACCGAAGTGCCGCCATTGGAAGC 135617 Query 146072 CGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGT 146131 |||||||||| || ||||| || ||| | |||| || || | | | ||||||| | Sbjct 135618 CGTAGACGGGACCGAGGTCGCCTACCTCGCGGTGCGAGAGTCCCACGCTGTCGAGGAACT 135677 Query 146132 CCCGGGACCCGTTGGCGTCCCAGATCTTGACGCC--CCTCGCGGAGAGCTCATTGGAGTC 146189 | || || |||||| ||||||||||||||| ||| |||||| || | | |||| Sbjct 135678 CGCGCGAGCCGTTGCCGTCCCAGATCTTGATGCCCGCCTCGCTCAGCGGT--ATGGACGA 135735 Query 146190 CGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTT 146249 |||| ||| | |||||| | ||||| ||| ||| | | |||||| | ||| Sbjct 135736 CGTGCTGCCCTGTACGAACCACAAAAGCTCGGCGACGACGGCGCGAAGGAAGACGCGCTT 135795 Query 146250 GGTGGTCAGCAGGGG 146264 || ||||||||||| Sbjct 135796 TGTCGTCAGCAGGGG 135810 >seq33151 Length=22394 Score = 104 bits (114), Expect = 3e-17 Identities = 221/322 (69%), Gaps = 11/322 (3%) Strand=Plus/Plus Query 145537 TAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTCC 145596 || |||| ||||| ||||| || | | ||| |||| || |||| | | |||||||| Sbjct 7215 TAAACCGACATCTTCATGGCAATCGTCTTGTGAGGGTCATACCCCTTGACCACAAAGTCC 7274 Query 145597 TCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGG----ATCCTGAGCCT-GGGAA 145651 || ||| | || | || ||||| | |||||||| | ||| |||| ||||| Sbjct 7275 TCTGCCTTCCAGCCGTCAATGTCA-CAGCCCGCCTCGCGCGTCATCTCGAGCAGCGGGAA 7333 Query 145652 AGGGCCGGGGGCTCCTGGTC-AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACG 145710 | | ||||||| | || ||||| || ||| | | || |||| |||||||||| Sbjct 7334 AT--CTTTGGGCTCCCGCTCGAGCTGTGTCTCCAGCGCACCGACATGGTCGAGGTAGACG 7391 Query 145711 TGCGCGTCCCCCAGGACGTGGATGAAG-TCCCCGGGCTCGAGGCCCGTGAGGTGGGCGAC 145769 ||||| || |||| ||| || | | | |||| ||| | | | || | || | Sbjct 7392 TGCGCATCGCCCATGACATGCGTCAGGCTCCCAGGGACCAGATCGCATG-CACGCGCAAT 7450 Query 145770 CATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCC 145829 ||||| |||||||| | |||||| || || ||||| ||||| || || |||||||| | Sbjct 7451 CATGTGCGTCAGCAGCGCGTAGCTCGCAATATTGAACGGCACGCCGAGACCCATGTCACA 7510 Query 145830 CGAGCGCTGGTACAGCTGGCAG 145851 || || ||||| ||||||||| Sbjct 7511 TGACCGTTGGTAGAGCTGGCAG 7532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589793695903280