Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq37272 156 4e-33 seq4446 138 1e-27 seq7069 136 4e-27 seq35245 132 5e-26 seq20113 120 3e-22 seq2280 120 3e-22 seq8335 116 4e-21 seq1514 113 5e-20 seq2224 111 2e-19 >seq37272 Length=476240 Score = 156 bits (172), Expect = 4e-33 Identities = 208/286 (73%), Gaps = 5/286 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| || || || |||||||||| ||| ||| | || ||| Sbjct 445995 ATTTGGCAAATGTACAAGAAGGCAGAAGCTTCTTTCTGGACCGCCGAAGAGATTGATCTG 445936 Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCTTGAAC---GACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||||||| | | || | ||| | || | |||||| Sbjct 445935 TCCAAGGATCTCCA-CGACTGGAACAACAAGATCAATGACGATGAAAAGTACTTCATCTC 445877 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||| | || ||||| || ||||| || ||||||||||||||||| || || ||||| Sbjct 445876 ACACATCCTTGCCTTCTTTGCCGCTTCAGATGGCATCGTCAACGAGAACCTCGTTGAGCG 445817 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| | ||||| ||||| ||||||| || |||||||||||||| |||||| || Sbjct 445816 CTTCAGTGCCGAGGTCCAGGTTCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGAT 445757 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||||||| | ||||| || | || ||| ||||| ||||| ||| Sbjct 445756 GGAGAACATCCACTCTGAGACTTACTCGCTGCTCATTGACACCTAC 445711 >seq4446 Length=444291 Score = 138 bits (152), Expect = 1e-27 Identities = 204/286 (71%), Gaps = 5/286 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || |||||||||| ||| ||| | || || Sbjct 123814 ATTTGGCAAATGTACAAGAAGGCAGAGGCTTCCTTCTGGACCGCCGAAGAGATTGATCTA 123755 Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCTTGAAC---GACAACGAGCGCCATTTCATCAA 116751 || ||||| | | | ||||||| | | || | || | || | |||||| Sbjct 123754 TCTAAGGATCTCCA-CGACTGGAACAACAAGATCAATGATGATGAAAAGTACTTCATCTC 123696 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||| | || ||||| || ||||| || ||||||||||||||||| || || ||||| Sbjct 123695 ACACATCCTTGCCTTCTTTGCCGCTTCAGATGGCATCGTCAACGAGAACCTCGTTGAGCG 123636 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| | ||||| ||||| | ||||| || |||||||||||||| ||||| || Sbjct 123635 CTTCAGTGCCGAGGTCCAGGTTCCTGAGGCTCGATGCTTCTACGGCTTCCAGATTATGAT 123576 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||||||| | ||||| || | || ||| ||||| ||||| ||| Sbjct 123575 GGAGAACATCCACTCCGAGACTTACTCGCTGCTCATTGACACCTAC 123530 >seq7069 Length=10009 Score = 136 bits (150), Expect = 4e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 ||||||| || ||||| || |||||| ||| | || | |||| | | |||| Sbjct 21 AGAAGGCTGACTGGGCCTTGACATGGATCACCGATAAGAAGTCTACCTTTGCCACCCGCC 80 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | || || ||||||| ||| ||||| ||||||| || |||||| | || || | Sbjct 81 TCGTTGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCAATCTTCT 140 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||||||||| || ||||||||||| |||||||||||| ||||||||||||||| | | Sbjct 141 GGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTTCTCCAACGAGCTCATCTCTCGTG 200 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTC 117199 |||||||||| || || || || ||| |||||||| Sbjct 201 ACGAGGGTCTTCACACTGATTTCGCTTGTCTGCTGTTC 238 >seq35245 Length=420 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||||||||| || |||||| | || || || | || Sbjct 335 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 276 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| |||||||||||| | ||||| Sbjct 275 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAA 216 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || || ||||| ||||| || || | ||||| || |||||||||| Sbjct 215 CAGCGCCTGATN---GCTGGCAAGCAGCTTGAGGATGGCCGCACTCTTTCCGACTACAAC 159 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 |||||||||||| |||| ||||| || ||| | ||| || | || || ||| Sbjct 158 ATCCAGAAGGAGTCCACTCTGCACCTCGTGCTCCGCCTGCGTGGTGGTGGC 108 >seq20113 Length=64481 Score = 120 bits (132), Expect = 3e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || || ||||| | || |||||| | || Sbjct 11184 ATGCAAATCTTCGTCAAGACACTCACCGGTAAGACTATCACATTGGAAGTCGAATCATCC 11243 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| || || | ||||| ||||| ||||| | ||||| Sbjct 11244 GACACGATCGACAACG-TCAAGTCCAAGATCCAAGACAAGGAGGGTATCCCTCCCGACCA 11302 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || || | ||| ||||| ||||| || || | |||||||| |||||||| Sbjct 11303 ACAGCGCCTGATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACCCTGTCTGACTACAA 11362 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 ||||||||||||| | || |||||| Sbjct 11363 CATCCAGAAGGAGTCGACCCTGCAT 11387 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| |||||||| |||| || || | || Sbjct 10956 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACCATCACTCTCGAGGTTGAGTCTTCC 11015 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || |||| ||||| ||||| || || | ||||| Sbjct 11016 GACACCATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCA 11074 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || ||||||| || || || ||||| || || | || || || ||||||||| Sbjct 11075 ACAGCGCCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGTACTCTGTCCGACTACAA 11134 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||||||| | || || || || || Sbjct 11135 CATTCAGAAGGAGTCGACTCTTCACCTCGT 11164 >seq2280 Length=241 Score = 120 bits (132), Expect = 3e-22 Identities = 131/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| ||| | || ||||| || ||||| || ||||||||||||||||| || Sbjct 229 TTCATCTCACACATCCTTGCCTTCTTTGCCGCTTCAGATGGCATCGTCAACGAGAACCTC 170 Query 116804 GTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAG 116863 || ||||| ||| | ||||| ||||| ||||||| || |||||||||||||| ||| Sbjct 169 GTTGAGCGCTTCAGTGCCGAGGTCCAGGTTCCCGAGGCTCGATGCTTCTACGGCTTCCAG 110 Query 116864 ATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||| ||||||||| | ||||| || | || ||| ||||| ||||| ||| Sbjct 109 ATCATGATGGAGAACATCCACTCTGAGACTTACTCGCTGCTCATTGACACCTAC 56 >seq8335 Length=118861 Score = 116 bits (128), Expect = 4e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || |||||||| || || || ||||| | || |||||| | || Sbjct 14735 ATGCAAATCTTCGTCAAGACGCTCACCGGTAAGACTATCACATTGGAAGTCGAATCATCC 14794 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||| || || | ||||| |||||||| || | || || Sbjct 14795 GACACGATCGACAATGTGAAGTCCAAGATCCAAGACAAGGAGGGCATTCCTCCCGATCAA 14854 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| ||||| ||||| || |||| |||||||| ||||||||| Sbjct 14855 CAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCTGACTACAAC 14914 Query 40870 ATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||||||| | || |||||| Sbjct 14915 ATCCAGAAGGAGTCGACCCTGCAT 14938 Score = 105 bits (116), Expect = 7e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| || ||||| |||||||| | || || || | || Sbjct 14507 ATGCAGATCTTTGTCAAGACGCTGACCGGCAAGACCATCACTCTTGAGGTGGAGTCTTCC 14566 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || |||| ||||| ||||| || || | ||||| Sbjct 14567 GACACCATTGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCA 14625 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || ||||||| ||| || || ||||| || || | || || | ||||||||| Sbjct 14626 ACAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGTACTTTGTCCGACTACAA 14685 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||||||| |||| || || || || Sbjct 14686 CATTCAGAAGGAGTCCACTCTTCACCTCGT 14715 >seq1514 Length=10590 Score = 113 bits (124), Expect = 5e-20 Identities = 129/171 (75%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| ||||| ||||||||| | || ||||| || | |||| | | | |||| | ||| Sbjct 5606 TCACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATCGACAACGTT-AAG 5664 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || || | ||||| ||||||||||| | ||||| || || || |||| ||| ||| Sbjct 5665 TCGAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAACAGCGCCTGATCTTCGCCGGC 5724 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAG 40881 || ||||| || || | |||||||| |||||||||||||||||||||| Sbjct 5725 AAGCAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAG 5775 >seq2224 Length=467227 Score = 111 bits (122), Expect = 2e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| | || || || || |||||| | | Sbjct 111929 TTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTGGAGTCCTCCGACACCATC 111988 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||||||| | ||||| || || || Sbjct 111989 GACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAACAGCGCCTG 112048 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 || | ||| ||||| ||||| || || | ||||| | ||||||||||||||||||| Sbjct 112049 ATTTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACTTTGTCCGACTACAACATCCAGAAG 112108 Query 40879 G 40879 | Sbjct 112109 G 112109 Score = 107 bits (118), Expect = 2e-18 Identities = 127/172 (74%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 40708 ACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTC 40767 || || |||||||| ||||||||| | || || || || |||||| | | | | || Sbjct 102589 ACCCTGACGGGCAAGACCATCACCCTTGAGGTGGAGTCCTCCGACACCATTGACAATGTC 102648 Query 40768 AAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCG 40827 ||| || || | ||||| |||||||||||| | ||||| || || || || | ||| Sbjct 102649 AAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAACAGCGCCTGATTTTCGCC 102708 Query 40828 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 ||||| ||||| || || | ||||| || |||||||||||||||||||| Sbjct 102709 GGCAAGCAGCTCGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGG 102760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514972010708320