Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq20113 140 3e-28
seq8335 134 1e-26
seq1514 113 4e-20
seq37228 98.7 9e-16
seq31830 98.7 9e-16
seq35245 96.9 3e-15
seq2224 91.5 1e-13
>seq20113
Length=64481
Score = 140 bits (154), Expect = 3e-28
Identities = 149/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || ||||||||||| ||| || ||| || |||||| ||||| ||||||
Sbjct 11152 GTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCCTCAAGCTGCTTTCCA 11093
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
|| ||||||| ||||| || |||||||| || ||||||||||| ||| || ||
Sbjct 11092 GCAAAGATGAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTTG 11033
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | |||| |||||| | ||| ||||||| || | || ||||||||||||||
Sbjct 11032 ACGTTGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTGCCGGTCAGAGTC 10973
Query 118722 TTTACAAAAATCTGCAT 118738
|| ||||| ||||||||
Sbjct 10972 TTGACAAAGATCTGCAT 10956
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
||||| || | || ||||| || || |||||||| || || ||||| |||||||
Sbjct 11392 ACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCCTCG 11333
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || |||||| | || || ||||| || |||||||| || ||||||||||||
Sbjct 11332 AGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCTTGG 11273
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || | |||| ||||| | || | ||||| || | || | || ||
Sbjct 11272 ATCTTGGACTTGACGTTGTCGATCGTGTCGGATGAT-TCGACTTCCAATGTGATAGTCTT 11214
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| || || || || || || |||||
Sbjct 11213 ACCGGTGAGTGTCTTGACGAAGATTTGCAT 11184
>seq8335
Length=118861
Score = 134 bits (148), Expect = 1e-26
Identities = 148/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || ||||||||||| ||| || ||| || |||||| ||||| ||||||
Sbjct 14703 GTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGACCATCCTCAAGCTGCTTTCCA 14644
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| ||||||||||||| || |||||||| || ||||||||||| ||| || ||
Sbjct 14643 GCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTG 14584
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | || | |||||| | ||| ||||| | || | || ||||||||||| ||
Sbjct 14583 ACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGAGTGATGGTCTTGCCGGTCAGCGTC 14524
Query 118722 TTTACAAAAATCTGCAT 118738
|| ||||| ||||||||
Sbjct 14523 TTGACAAAGATCTGCAT 14507
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
||||| || | || ||||| || || |||||||| || || ||||| |||||
Sbjct 14943 ACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCA 14884
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || |||||| | || || ||||| ||||||||||| |||||||||||||||
Sbjct 14883 AGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGATCGGGAGGAATGCCCTCCTTGTCTTGG 14824
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || | |||| ||||| | || | ||||| || | || | || ||
Sbjct 14823 ATCTTGGACTTCACATTGTCGATCGTGTCGGATGAT-TCGACTTCCAATGTGATAGTCTT 14765
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| || || || || || || |||||
Sbjct 14764 ACCGGTGAGCGTCTTGACGAAGATTTGCAT 14735
>seq1514
Length=10590
Score = 113 bits (124), Expect = 4e-20
Identities = 127/170 (75%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 118545 GACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCG 118604
||||| || || |||||||| ||| || ||||| |||||| ||||| || || |||
Sbjct 5777 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCG 5718
Query 118605 TAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACC 118664
|||| || ||||| || |||||||| |||||||||||||| || || |||||
Sbjct 5717 AAGATCAGGCGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTAACG 5658
Query 118665 TGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714
| |||| |||||||| | ||||||||| | ||| | || ||||||||
Sbjct 5657 TTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 5608
>seq37228
Length=14314
Score = 98.7 bits (108), Expect = 9e-16
Identities = 132/184 (72%), Gaps = 0/184 (0%)
Strand=Plus/Minus
Query 133222 GGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACG 133281
||||||| || || |||||||||||||| || || | | || | || |||||| | |
Sbjct 14298 GGTTGACGACCTGGAACTCGCCGGCGAGCACACGACGCTGGTAGATGTTGGACGTGTAAG 14239
Query 133282 GTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCA 133341
| ||||| | ||||||||||| || ||||||| || | |||||||||||| |||||
Sbjct 14238 GCTCGAAGCACTCGTTGTTGCCAAGGATCTGCGAGGTACTGGCCGTGGGCATGGGCGCCA 14179
Query 133342 CCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCCC 133401
| | | | ||| | ||||||| | || || | || || || ||| ||||||||
Sbjct 14178 CGAGAAGACTGTTACGGACGCCGTGTTGCTTGATCTGGCTCTTCAGGTCGGCCCAGTCCC 14119
Query 133402 ACAG 133405
| ||
Sbjct 14118 AAAG 14115
>seq31830
Length=311768
Score = 98.7 bits (108), Expect = 9e-16
Identities = 132/184 (72%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 133222 GGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACG 133281
||||||| || || |||||||||||||| || || | | || | || |||||| | |
Sbjct 110328 GGTTGACGACCTGGAACTCGCCGGCGAGCACACGACGCTGGTAGATGTTGGACGTGTAAG 110387
Query 133282 GTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCA 133341
| ||||| | ||||||||||| || ||||||| || | |||||||||||| |||||
Sbjct 110388 GCTCGAAGCACTCGTTGTTGCCAAGGATCTGCGAGGTACTGGCCGTGGGCATGGGCGCCA 110447
Query 133342 CCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCCC 133401
| | | | ||| | ||||||| | || || | || || || ||| ||||||||
Sbjct 110448 CGAGAAGACTGTTACGGACGCCGTGTTGCTTGATCTGGCTCTTCAGGTCGGCCCAGTCCC 110507
Query 133402 ACAG 133405
| ||
Sbjct 110508 AAAG 110511
>seq35245
Length=420
Score = 96.9 bits (106), Expect = 3e-15
Identities = 148/211 (70%), Gaps = 3/211 (1%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||| | ||| | || ||||| || || |||||||| ||| | |||||| ||||||
Sbjct 129 CACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTC 188
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| || ||||| || || ||||| || ||||| || ||||||||||||||
Sbjct 189 AAGCTGCTTGCCAGCN---ATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTG 245
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || | |||| |||||| | ||| ||||| | ||| | || ||
Sbjct 246 GATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTT 305
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
||| || || || || || || |||||||||
Sbjct 306 GCCCGTGAGGGTCTTGACGAAGATCTGCATG 336
>seq2224
Length=467227
Score = 91.5 bits (100), Expect = 1e-13
Identities = 122/170 (72%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
|| || |||||||| ||| || |||||| |||||||||||| || || ||| | ||
Sbjct 102758 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATC 102699
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
|| ||||| || ||||| || |||||||||||||| || || || || | ||
Sbjct 102698 AGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCA 102639
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720
| |||||| | | ||| ||||| | ||| | || ||||| ||||| ||
Sbjct 102638 ATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGT 102589
Score = 91.5 bits (100), Expect = 1e-13
Identities = 128/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
|| || |||||||| ||| || |||||| |||||| ||||| || || ||| | ||
Sbjct 112107 TTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATC 112048
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
|| ||||| || || || || |||||||||||||| || || || || | |||
Sbjct 112047 AGGCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 111988
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730
| |||||| | | ||| ||||| | ||| | || ||||| ||||| || || || |||
Sbjct 111987 ATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAA 111928
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433627462544344
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