Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq20113 140 3e-28 seq8335 134 1e-26 seq1514 113 4e-20 seq37228 98.7 9e-16 seq31830 98.7 9e-16 seq35245 96.9 3e-15 seq2224 91.5 1e-13 >seq20113 Length=64481 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || ||||||||||| ||| || ||| || |||||| ||||| |||||| Sbjct 11152 GTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCCTCAAGCTGCTTTCCA 11093 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || ||||||| ||||| || |||||||| || ||||||||||| ||| || || Sbjct 11092 GCAAAGATGAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTTG 11033 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||| | ||| ||||||| || | || |||||||||||||| Sbjct 11032 ACGTTGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTGCCGGTCAGAGTC 10973 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 10972 TTGACAAAGATCTGCAT 10956 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || ||||| || || |||||||| || || ||||| ||||||| Sbjct 11392 ACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCCTCG 11333 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| | || || ||||| || |||||||| || |||||||||||| Sbjct 11332 AGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCTTGG 11273 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| ||||| | || | ||||| || | || | || || Sbjct 11272 ATCTTGGACTTGACGTTGTCGATCGTGTCGGATGAT-TCGACTTCCAATGTGATAGTCTT 11214 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || || || ||||| Sbjct 11213 ACCGGTGAGTGTCTTGACGAAGATTTGCAT 11184 >seq8335 Length=118861 Score = 134 bits (148), Expect = 1e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || ||||||||||| ||| || ||| || |||||| ||||| |||||| Sbjct 14703 GTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGACCATCCTCAAGCTGCTTTCCA 14644 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| ||||||||||||| || |||||||| || ||||||||||| ||| || || Sbjct 14643 GCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTG 14584 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| | ||| ||||| | || | || ||||||||||| || Sbjct 14583 ACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGAGTGATGGTCTTGCCGGTCAGCGTC 14524 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 14523 TTGACAAAGATCTGCAT 14507 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || ||||| || || |||||||| || || ||||| ||||| Sbjct 14943 ACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCA 14884 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| | || || ||||| ||||||||||| ||||||||||||||| Sbjct 14883 AGCTGCTTGCCAGCGAAAATCAGGCGCTGTTGATCGGGAGGAATGCCCTCCTTGTCTTGG 14824 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| ||||| | || | ||||| || | || | || || Sbjct 14823 ATCTTGGACTTCACATTGTCGATCGTGTCGGATGAT-TCGACTTCCAATGTGATAGTCTT 14765 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || || || ||||| Sbjct 14764 ACCGGTGAGCGTCTTGACGAAGATTTGCAT 14735 >seq1514 Length=10590 Score = 113 bits (124), Expect = 4e-20 Identities = 127/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 118545 GACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCG 118604 ||||| || || |||||||| ||| || ||||| |||||| ||||| || || ||| Sbjct 5777 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCG 5718 Query 118605 TAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACC 118664 |||| || ||||| || |||||||| |||||||||||||| || || ||||| Sbjct 5717 AAGATCAGGCGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCGACTTAACG 5658 Query 118665 TGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 | |||| |||||||| | ||||||||| | ||| | || |||||||| Sbjct 5657 TTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 5608 >seq37228 Length=14314 Score = 98.7 bits (108), Expect = 9e-16 Identities = 132/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 133222 GGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACG 133281 ||||||| || || |||||||||||||| || || | | || | || |||||| | | Sbjct 14298 GGTTGACGACCTGGAACTCGCCGGCGAGCACACGACGCTGGTAGATGTTGGACGTGTAAG 14239 Query 133282 GTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCA 133341 | ||||| | ||||||||||| || ||||||| || | |||||||||||| ||||| Sbjct 14238 GCTCGAAGCACTCGTTGTTGCCAAGGATCTGCGAGGTACTGGCCGTGGGCATGGGCGCCA 14179 Query 133342 CCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCCC 133401 | | | | ||| | ||||||| | || || | || || || ||| |||||||| Sbjct 14178 CGAGAAGACTGTTACGGACGCCGTGTTGCTTGATCTGGCTCTTCAGGTCGGCCCAGTCCC 14119 Query 133402 ACAG 133405 | || Sbjct 14118 AAAG 14115 >seq31830 Length=311768 Score = 98.7 bits (108), Expect = 9e-16 Identities = 132/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 133222 GGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACG 133281 ||||||| || || |||||||||||||| || || | | || | || |||||| | | Sbjct 110328 GGTTGACGACCTGGAACTCGCCGGCGAGCACACGACGCTGGTAGATGTTGGACGTGTAAG 110387 Query 133282 GTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCA 133341 | ||||| | ||||||||||| || ||||||| || | |||||||||||| ||||| Sbjct 110388 GCTCGAAGCACTCGTTGTTGCCAAGGATCTGCGAGGTACTGGCCGTGGGCATGGGCGCCA 110447 Query 133342 CCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCCC 133401 | | | | ||| | ||||||| | || || | || || || ||| |||||||| Sbjct 110448 CGAGAAGACTGTTACGGACGCCGTGTTGCTTGATCTGGCTCTTCAGGTCGGCCCAGTCCC 110507 Query 133402 ACAG 133405 | || Sbjct 110508 AAAG 110511 >seq35245 Length=420 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||| | || ||||| || || |||||||| ||| | |||||| |||||| Sbjct 129 CACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTC 188 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || ||||| || || ||||| || ||||| || |||||||||||||| Sbjct 189 AAGCTGCTTGCCAGCN---ATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTG 245 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| |||||| | ||| ||||| | ||| | || || Sbjct 246 GATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTT 305 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| || || || || || || ||||||||| Sbjct 306 GCCCGTGAGGGTCTTGACGAAGATCTGCATG 336 >seq2224 Length=467227 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| || |||||| |||||||||||| || || ||| | || Sbjct 102758 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATC 102699 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || ||||| || ||||| || |||||||||||||| || || || || | || Sbjct 102698 AGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCA 102639 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 | |||||| | | ||| ||||| | ||| | || ||||| ||||| || Sbjct 102638 ATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGT 102589 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| || |||||| |||||| ||||| || || ||| | || Sbjct 112107 TTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATC 112048 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || ||||| || || || || |||||||||||||| || || || || | ||| Sbjct 112047 AGGCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 111988 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | |||||| | | ||| ||||| | ||| | || ||||| ||||| || || || ||| Sbjct 111987 ATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAA 111928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433627462544344