Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq35052 98.7 2e-15 seq4447 95.1 3e-14 >seq35052 Length=15850 Score = 98.7 bits (108), Expect = 2e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 254017 TCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAACCCTGT 254076 || |||| || ||||| || ||||||||||| || |||||||||||||| || | | | Sbjct 2381 TCTACGGCCCCCCCGGCACGGGCAAGACGTCGACGATCCTGGCGCTGGCACGGCGCATCT 2322 Query 254077 TGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGT 254136 ||| | |||| || | || ||||| ||||| ||||| || ||||| ||||| Sbjct 2321 ACGGCCCCGAGAACGTGCGGCAGATGGTGCTGGAGCTCAACGCATCCGACGACCGCGGCA 2262 Query 254137 TGGACGTCGTCCGCGACAAGATCAAGACTTTC 254168 | ||||| || ||||| |||||||||| ||| Sbjct 2261 TCGACGTGGTGCGCGAGCAGATCAAGACGTTC 2230 >seq4447 Length=142791 Score = 95.1 bits (104), Expect = 3e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 254017 TCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAACCCTGT 254076 || |||| || ||||| || ||||||||||| || |||||||||||||| || | | | Sbjct 49619 TCTACGGCCCCCCCGGCACGGGCAAGACGTCGACGATCCTGGCGCTGGCGCGGCGCATCT 49678 Query 254077 TGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGT 254136 ||| | |||| || | || ||||| || || ||||| || ||||| ||||| Sbjct 49679 ACGGCCCCGAGAACGTGCGGCAGATGGTGCTGGAACTCAACGCGTCCGACGACCGCGGCA 49738 Query 254137 TGGACGTCGTCCGCGACAAGATCAAGACTTTC 254168 | ||||| || ||||| |||||||||| ||| Sbjct 49739 TCGACGTGGTGCGCGAGCAGATCAAGACATTC 49770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073238354568576