Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq31830 140 4e-28 seq336 136 5e-27 seq4446 86.0 8e-12 >seq31830 Length=311768 Score = 140 bits (154), Expect = 4e-28 Identities = 450/696 (65%), Gaps = 12/696 (2%) Strand=Plus/Plus Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280 ||| || || | || ||||| | | ||| || |||| | || || || ||||| || Sbjct 111175 AGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAA 111234 Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 |||||| || ||||| | || | || ||||| | | | | ||||| || || Sbjct 111235 GAGATCGGGGATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCCTTGCCGTG 111294 Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 ||||| || || |||||| | | | ||||| ||||| || || | ||| ||||| Sbjct 111295 GTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGC 111354 Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460 | | | || || || ||||| || ||||| || | ||| | || ||||| || | || Sbjct 111355 AAAAGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAGAC 111414 Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520 | | ||| || | || |||||||| | || ||||| |||| || || ||| | Sbjct 111415 GCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCAGT 111474 Query 63521 GGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63580 |||||| || | | ||||| || || || ||||| || ||||| | || || Sbjct 111475 GGCACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCACA 111534 Query 63581 TCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACA 63640 || | ||||| ||||| ||||| ||||| ||||| |||||| || || || || Sbjct 111535 GGTCTTGAGGGTGTCGTAGATACCTTCAATGCTGTCATCCTTCATGTCAACCAGGAAGCA 111594 Query 63641 GCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63700 | |||| || ||| || || || || || | ||||||||| ||||| || || Sbjct 111595 GGACGACAGCTGAGCCTGAGGCGTGCCAGCGTTGAAGAGGGTAGGAGATGCGTGTGTGAA 111654 Query 63701 CCATTTTTCAGAAAGTAGATTGTACGTCTCAAT----AGCTGA--GTCTATATCCCATTG 63754 |||| || | || |||||||||||||| ||| | || | | |||| Sbjct 111655 GAATTTGCTGGACATGAGGTTGTACGTCTCAATGACACGCTCAACGT-TGTCTCCC---- 111709 Query 63755 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTT 63814 || || || | |||||||| | ||||||||| || | || |||| ||| || Sbjct 111710 -CAGATACCGACGGAAACACGCATAATCATGTGCTGCGGGCGCTCGGCAATCTTGCCGTC 111768 Query 63815 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63874 | || | | ||||| |||| || || || ||||| || | ||| ||||| Sbjct 111769 AAGCTTGAGGAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTC 111828 Query 63875 TCGTTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910 || ||||| | ||| |||| | |||| ||||| Sbjct 111829 ACGGTCGTAGACAATGGCCGAGTCAAGCTCCTCCTT 111864 >seq336 Length=177044 Score = 136 bits (150), Expect = 5e-27 Identities = 338/513 (66%), Gaps = 0/513 (0%) Strand=Plus/Minus Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280 ||| || || | || ||||| | | ||| || |||| | || || || ||||| || Sbjct 110835 AGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAA 110776 Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 |||||| || ||||| | || | || ||||| | | | | ||||| || || Sbjct 110775 GAGATCGGGGATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCCTTGCCGTG 110716 Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 ||||| || || |||||| | | | ||||| ||||| || || | ||| ||||| Sbjct 110715 GTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGC 110656 Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460 | | | || || || ||||| || ||||| || | ||| | || ||||| || | || Sbjct 110655 AAAAGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAGAC 110596 Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520 | | ||| || | || |||||||| | || ||||| |||| || || ||| | Sbjct 110595 GCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCAGT 110536 Query 63521 GGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63580 |||||| || | | ||||| || || || ||||| || ||||| | || || Sbjct 110535 GGCACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCACA 110476 Query 63581 TCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACA 63640 || | ||||| ||||| ||||| ||||||||||| |||||| | || || || Sbjct 110475 GGTCTTGAGGGTGTCGTAGATACCTTCAATGCTATCATCCTTCATGTCGACCAGGAAGCA 110416 Query 63641 GCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63700 | |||| || | | || || || || || | ||||||||| ||||| || || Sbjct 110415 GGACGACAGCTGAGCCTGGGGCGTGCCAGCGTTGAAGAGGGTAGGAGAGGCGTGTGTGAA 110356 Query 63701 CCATTTTTCAGAAAGTAGATTGTACGTCTCAAT 63733 |||| | || | || |||||||||||||| Sbjct 110355 GAATTTGTTGGACATGAGGTTGTACGTCTCAAT 110323 >seq4446 Length=444291 Score = 86.0 bits (94), Expect = 8e-12 Identities = 175/259 (68%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 || || || ||||| || || ||||| || |||||||| |||| |||||| | || | Sbjct 123558 TCGGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAGCATCGAGCCTCAGGAACC 123617 Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998 || || || | || || || || | | || || || || || ||||| || ||| Sbjct 123618 TGGACCTCGGCACTGAAGCGCTCAACGAGGTTCTCGTTGACGATGCCATCTGAAGCGGCA 123677 Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-----TGGTGTTAGTTTATTCC 34053 || || || | | ||| || || || ||||| || || | || || |||| Sbjct 123678 AAGAAGGCAAGGATGTGTGAGATGAAGTACTTTTCATCATCATTGATCTTG--TTGTTCC 123735 Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | || | || ||| ||||||| ||| | ||||| | ||||| || || |||||||||| Sbjct 123736 AGTCGTGGAGATCCTTAGATAGATCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCTGCCT 123795 Query 34114 TTTTATACATATTCCAGAT 34132 | || ||||| | ||| || Sbjct 123796 TCTTGTACATTTGCCAAAT 123814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629515429260960