Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq31830 140 4e-28
seq336 136 5e-27
seq4446 86.0 8e-12
>seq31830
Length=311768
Score = 140 bits (154), Expect = 4e-28
Identities = 450/696 (65%), Gaps = 12/696 (2%)
Strand=Plus/Plus
Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280
||| || || | || ||||| | | ||| || |||| | || || || ||||| ||
Sbjct 111175 AGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAA 111234
Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340
|||||| || ||||| | || | || ||||| | | | | ||||| || ||
Sbjct 111235 GAGATCGGGGATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCCTTGCCGTG 111294
Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400
||||| || || |||||| | | | ||||| ||||| || || | ||| |||||
Sbjct 111295 GTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGC 111354
Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460
| | | || || || ||||| || ||||| || | ||| | || ||||| || | ||
Sbjct 111355 AAAAGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAGAC 111414
Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520
| | ||| || | || |||||||| | || ||||| |||| || || ||| |
Sbjct 111415 GCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCAGT 111474
Query 63521 GGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63580
|||||| || | | ||||| || || || ||||| || ||||| | || ||
Sbjct 111475 GGCACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCACA 111534
Query 63581 TCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACA 63640
|| | ||||| ||||| ||||| ||||| ||||| |||||| || || || ||
Sbjct 111535 GGTCTTGAGGGTGTCGTAGATACCTTCAATGCTGTCATCCTTCATGTCAACCAGGAAGCA 111594
Query 63641 GCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63700
| |||| || ||| || || || || || | ||||||||| ||||| || ||
Sbjct 111595 GGACGACAGCTGAGCCTGAGGCGTGCCAGCGTTGAAGAGGGTAGGAGATGCGTGTGTGAA 111654
Query 63701 CCATTTTTCAGAAAGTAGATTGTACGTCTCAAT----AGCTGA--GTCTATATCCCATTG 63754
|||| || | || |||||||||||||| ||| | || | | ||||
Sbjct 111655 GAATTTGCTGGACATGAGGTTGTACGTCTCAATGACACGCTCAACGT-TGTCTCCC---- 111709
Query 63755 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTT 63814
|| || || | |||||||| | ||||||||| || | || |||| ||| ||
Sbjct 111710 -CAGATACCGACGGAAACACGCATAATCATGTGCTGCGGGCGCTCGGCAATCTTGCCGTC 111768
Query 63815 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63874
| || | | ||||| |||| || || || ||||| || | ||| |||||
Sbjct 111769 AAGCTTGAGGAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTC 111828
Query 63875 TCGTTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910
|| ||||| | ||| |||| | |||| |||||
Sbjct 111829 ACGGTCGTAGACAATGGCCGAGTCAAGCTCCTCCTT 111864
>seq336
Length=177044
Score = 136 bits (150), Expect = 5e-27
Identities = 338/513 (66%), Gaps = 0/513 (0%)
Strand=Plus/Minus
Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280
||| || || | || ||||| | | ||| || |||| | || || || ||||| ||
Sbjct 110835 AGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAA 110776
Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340
|||||| || ||||| | || | || ||||| | | | | ||||| || ||
Sbjct 110775 GAGATCGGGGATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCCTTGCCGTG 110716
Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400
||||| || || |||||| | | | ||||| ||||| || || | ||| |||||
Sbjct 110715 GTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGC 110656
Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460
| | | || || || ||||| || ||||| || | ||| | || ||||| || | ||
Sbjct 110655 AAAAGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAGAC 110596
Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520
| | ||| || | || |||||||| | || ||||| |||| || || ||| |
Sbjct 110595 GCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCAGT 110536
Query 63521 GGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63580
|||||| || | | ||||| || || || ||||| || ||||| | || ||
Sbjct 110535 GGCACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCACA 110476
Query 63581 TCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACA 63640
|| | ||||| ||||| ||||| ||||||||||| |||||| | || || ||
Sbjct 110475 GGTCTTGAGGGTGTCGTAGATACCTTCAATGCTATCATCCTTCATGTCGACCAGGAAGCA 110416
Query 63641 GCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63700
| |||| || | | || || || || || | ||||||||| ||||| || ||
Sbjct 110415 GGACGACAGCTGAGCCTGGGGCGTGCCAGCGTTGAAGAGGGTAGGAGAGGCGTGTGTGAA 110356
Query 63701 CCATTTTTCAGAAAGTAGATTGTACGTCTCAAT 63733
|||| | || | || ||||||||||||||
Sbjct 110355 GAATTTGTTGGACATGAGGTTGTACGTCTCAAT 110323
>seq4446
Length=444291
Score = 86.0 bits (94), Expect = 8e-12
Identities = 175/259 (68%), Gaps = 7/259 (3%)
Strand=Plus/Plus
Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938
|| || || ||||| || || ||||| || |||||||| |||| |||||| | || |
Sbjct 123558 TCGGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAGCATCGAGCCTCAGGAACC 123617
Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998
|| || || | || || || || | | || || || || || ||||| || |||
Sbjct 123618 TGGACCTCGGCACTGAAGCGCTCAACGAGGTTCTCGTTGACGATGCCATCTGAAGCGGCA 123677
Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-----TGGTGTTAGTTTATTCC 34053
|| || || | | ||| || || || ||||| || || | || || ||||
Sbjct 123678 AAGAAGGCAAGGATGTGTGAGATGAAGTACTTTTCATCATCATTGATCTTG--TTGTTCC 123735
Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113
| || | || ||| ||||||| ||| | ||||| | ||||| || || ||||||||||
Sbjct 123736 AGTCGTGGAGATCCTTAGATAGATCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCTGCCT 123795
Query 34114 TTTTATACATATTCCAGAT 34132
| || ||||| | ||| ||
Sbjct 123796 TCTTGTACATTTGCCAAAT 123814
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629515429260960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |