Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq336 116 5e-21
seq31830 111 2e-19
seq7069 84.2 3e-11
>seq336
Length=177044
Score = 116 bits (128), Expect = 5e-21
Identities = 450/702 (64%), Gaps = 20/702 (3%)
Strand=Plus/Minus
Query 66012 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 66071
||||| || || | || ||||| | | ||| || |||| | || || || |||||
Sbjct 110837 CCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATG 110778
Query 66072 AAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCT 66131
|||||||| || ||||| | || | || | ||| | | | | ||||| || ||
Sbjct 110777 AAGAGATCGGGGATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCCTTGCCG 110718
Query 66132 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATG 66191
||||| || || |||||| | | | |||| ||||| || || | ||| |||
Sbjct 110717 TGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATG 110658
Query 66192 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 66251
|| | | | || || || ||||| || ||||| || | ||| | || ||||| || |
Sbjct 110657 GCAAAAGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAG 110598
Query 66252 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 66311
|| | | ||| || | || || || || || || ||||| |||| || || |||
Sbjct 110597 ACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCA 110538
Query 66312 CTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 66371
| ||||| || | | ||||| || || || ||||| || ||||| | ||
Sbjct 110537 GTGGCACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCA 110478
Query 66372 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 66431
|| || | || || ||||| || || || ||||||||| |||||| | || ||
Sbjct 110477 CAGGTCTTGAGGGTGTCGTAGATACCTTCAATGCTATCATCCTTCATGTCGACCAGGAAG 110418
Query 66432 CAGCTAGACATTTGGTGACGACTAG----TTCCCGCATTAAATAAGGTAGGAGAAGCGTG 66487
||| |||| | ||| | || | | || || || || | ||||||||| |||||
Sbjct 110417 CAGGACGACA---GCTGA-GCCTGGGGCGTGCCAGCGTTGAAGAGGGTAGGAGAGGCGTG 110362
Query 66488 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT----AGCTGA--GTCTATATC 66541
|| || |||| | || | || |||||||||||||| ||| | || | | ||
Sbjct 110361 TGTGAAGAATTTGTTGGACATGAGGTTGTACGTCTCAATGACACGCTCAACGT-TGTCTC 110303
Query 66542 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTT 66601
|| || || || | |||||||| | ||||||||| || | || |||||||
Sbjct 110302 CC-----CAGATACCAACGGACACACGCATAATCATGTGCTGCGGGCGCTCGGCGATCTT 110248
Query 66602 GTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 66661
| || | || | | || || |||| ||| || || ||||| || | |||
Sbjct 110247 GCCGTCAAGCTTGAGGAGATAAGAGCGCTCCAGAGTCTTGAAGCCAAAGTATTGGTAGTT 110188
Query 66662 AAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 66703
||||| || ||||| | ||| | |||| ||| | |||||
Sbjct 110187 GAAGTCACGATCGTAGACAATGGCAGAGTCGAGCTCCTCCTT 110146
>seq31830
Length=311768
Score = 111 bits (122), Expect = 2e-19
Identities = 445/698 (64%), Gaps = 12/698 (2%)
Strand=Plus/Plus
Query 66012 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 66071
||||| || || | || ||||| | | ||| || |||| | || || || |||||
Sbjct 111173 CCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATG 111232
Query 66072 AAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCT 66131
|||||||| || ||||| | || | || | ||| | | | | ||||| || ||
Sbjct 111233 AAGAGATCGGGGATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCCTTGCCG 111292
Query 66132 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATG 66191
||||| || || |||||| | | | |||| ||||| || || | ||| |||
Sbjct 111293 TGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATG 111352
Query 66192 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 66251
|| | | | || || || ||||| || ||||| || | ||| | || ||||| || |
Sbjct 111353 GCAAAAGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAG 111412
Query 66252 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 66311
|| | | ||| || | || || || || || || ||||| |||| || || |||
Sbjct 111413 ACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCA 111472
Query 66312 CTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 66371
| ||||| || | | ||||| || || || ||||| || ||||| | ||
Sbjct 111473 GTGGCACGGATGCGATGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCA 111532
Query 66372 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 66431
|| || | || || ||||| || || || || |||||| |||||| || || ||
Sbjct 111533 CAGGTCTTGAGGGTGTCGTAGATACCTTCAATGCTGTCATCCTTCATGTCAACCAGGAAG 111592
Query 66432 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 66491
||| |||| || || || || || || || | ||||||||| ||||| ||
Sbjct 111593 CAGGACGACAGCTGAGCCTGAGGCGTGCCAGCGTTGAAGAGGGTAGGAGATGCGTGTGTG 111652
Query 66492 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT----AGCTGA--GTCTATATCCCAT 66545
|| |||| || | || |||||||||||||| ||| | || | | ||||
Sbjct 111653 AAGAATTTGCTGGACATGAGGTTGTACGTCTCAATGACACGCTCAACGT-TGTCTCCC-- 111709
Query 66546 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 66605
|| || || | |||||||| | ||||||||| || | || | |||||| |
Sbjct 111710 ---CAGATACCGACGGAAACACGCATAATCATGTGCTGCGGGCGCTCGGCAATCTTGCCG 111766
Query 66606 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 66665
| | || | | ||||| |||| || || || ||||| || | ||| |||
Sbjct 111767 TCAAGCTTGAGGAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGAAG 111826
Query 66666 TCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 66703
|| || ||||| | ||| |||||| || | |||||
Sbjct 111827 TCACGGTCGTAGACAATGGCCGAGTCAAGCTCCTCCTT 111864
>seq7069
Length=10009
Score = 84.2 bits (92), Expect = 3e-11
Identities = 111/154 (72%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 36149 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 36208
|||| || ||| |||||||| ||| ||||||||||| | | || | ||||||||
Sbjct 237 AACAGCAGACAAGCGAAATCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAG 178
Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 36268
|| || || || ||||| ||||| ||||| || ||||| || || || || || | |||
Sbjct 177 AAAGTCAGGCCAGGCATGAGGCCTCGCTTCTTGAGCCAGAAGATTGAGGCGAAGGCACCA 118
Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAA 36302
||||| || || || || |||| || ||||
Sbjct 117 CTGAAGAAGATACCCTCAACGACCGCGAAAGCAA 84
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657857025144880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |