Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq31830 123 3e-23
seq336 123 3e-23
seq37272 87.8 2e-12
>seq31830
Length=311768
Score = 123 bits (136), Expect = 3e-23
Identities = 340/519 (66%), Gaps = 8/519 (2%)
Strand=Plus/Plus
Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033
||||| || || || || ||||| | | ||| || || | | | || || |||||
Sbjct 111173 CCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATG 111232
Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093
|||||||| || ||||| | || | || ||||| | | | | |||||| || ||
Sbjct 111233 AAGAGATCGGGGATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCCTTGCCG 111292
Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153
||||| || || |||||| | | | ||||| ||||| || || | ||| |||
Sbjct 111293 TGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATG 111352
Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213
|| | | | || || || ||||| || ||||| || | ||| | || ||||| || |
Sbjct 111353 GCAAAAGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAG 111412
Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273
|| | | ||| || | || || || || | || ||||| |||| || || |||
Sbjct 111413 ACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCA 111472
Query 72274 CTGGCACGAATATTGCTAATTGAT----AGACCTATTCCCCCTGCCATTTTAGAGATTAA 72329
||||||| || || | | || ||||| || || || ||||| || ||||| |
Sbjct 111473 GTGGCACGGAT---GCGA-TGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCAT 111528
Query 72330 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 72389
|| || || | || || ||||| || || || || |||||| |||||| || ||
Sbjct 111529 GGCACAGGTCTTGAGGGTGTCGTAGATACCTTCAATGCTGTCATCCTTCATGTCAACCAG 111588
Query 72390 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 72449
|| ||| |||| || || || || || || || | ||||||||| |||||
Sbjct 111589 GAAGCAGGACGACAGCTGAGCCTGAGGCGTGCCAGCGTTGAAGAGGGTAGGAGATGCGTG 111648
Query 72450 CGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAAT 72488
|| || |||| |||| || ||||||||||||||
Sbjct 111649 TGTGAAGAATTTGCTGGACATGAGGTTGTACGTCTCAAT 111687
>seq336
Length=177044
Score = 123 bits (136), Expect = 3e-23
Identities = 344/523 (66%), Gaps = 16/523 (3%)
Strand=Plus/Minus
Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033
||||| || || || || ||||| | | ||| || || | | | || || |||||
Sbjct 110837 CCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATG 110778
Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093
|||||||| || ||||| | || | || ||||| | | | | |||||| || ||
Sbjct 110777 AAGAGATCGGGGATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCCTTGCCG 110718
Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153
||||| || || |||||| | | | ||||| ||||| || || | ||| |||
Sbjct 110717 TGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATG 110658
Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213
|| | | | || || || ||||| || ||||| || | ||| | || ||||| || |
Sbjct 110657 GCAAAAGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAG 110598
Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273
|| | | ||| || | || || || || | || ||||| |||| || || |||
Sbjct 110597 ACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCA 110538
Query 72274 CTGGCACGAATATTGCTAATTGAT----AGACCTATTCCCCCTGCCATTTTAGAGATTAA 72329
||||||| || || | | || ||||| || || || ||||| || ||||| |
Sbjct 110537 GTGGCACGGAT---GCGA-TGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCAT 110482
Query 72330 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 72389
|| || || | || || ||||| || || || ||||||||| |||||| | ||
Sbjct 110481 GGCACAGGTCTTGAGGGTGTCGTAGATACCTTCAATGCTATCATCCTTCATGTCGACCAG 110422
Query 72390 AAAACAGCTAGACATTTGGTGACGACTAG----TTCCCGCATTAAATAAGGTAGGAGAAG 72445
|| ||| |||| | ||| | || | | || || || || | ||||||||| |
Sbjct 110421 GAAGCAGGACGACA---GCTGA-GCCTGGGGCGTGCCAGCGTTGAAGAGGGTAGGAGAGG 110366
Query 72446 CGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAAT 72488
|||| || || |||| | |||| || ||||||||||||||
Sbjct 110365 CGTGTGTGAAGAATTTGTTGGACATGAGGTTGTACGTCTCAAT 110323
>seq37272
Length=476240
Score = 87.8 bits (96), Expect = 2e-12
Identities = 175/257 (68%), Gaps = 3/257 (1%)
Strand=Plus/Plus
Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421
|| || || ||||| || || ||||| || |||||||| |||| ||||||| ||||
Sbjct 445739 TCAGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGAACC 445798
Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481
|| || || | || || || ||| | | || ||||| || || || || || |||
Sbjct 445799 TGGACCTCGGCACTGAAGCGCTCAACGAGGTTCTCGTTGACGATGCCATCTGAAGCGGCA 445858
Query 42482 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--CGGTGTTAAT-TTATTCCAA 42538
|| || || | | ||| || || || ||||| || | || | | || |||||
Sbjct 445859 AAGAAGGCAAGGATGTGTGAGATGAAGTACTTTTCATCGTCATTGATCTTGTTGTTCCAG 445918
Query 42539 TCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTT 42598
|| | || ||| || || | ||| | ||||| | ||||| || || |||||||||||
Sbjct 445919 TCGTGGAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAAGAAGCTTCTGCCTTC 445978
Query 42599 TTATACATATTCCAGAT 42615
|| ||||| | ||| ||
Sbjct 445979 TTGTACATTTGCCAAAT 445995
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670817204190320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |