Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq31830 123 3e-23 seq336 123 3e-23 seq37272 87.8 2e-12 >seq31830 Length=311768 Score = 123 bits (136), Expect = 3e-23 Identities = 340/519 (66%), Gaps = 8/519 (2%) Strand=Plus/Plus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 ||||| || || || || ||||| | | ||| || || | | | || || ||||| Sbjct 111173 CCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATG 111232 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 |||||||| || ||||| | || | || ||||| | | | | |||||| || || Sbjct 111233 AAGAGATCGGGGATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCCTTGCCG 111292 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 ||||| || || |||||| | | | ||||| ||||| || || | ||| ||| Sbjct 111293 TGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATG 111352 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | | || || || ||||| || ||||| || | ||| | || ||||| || | Sbjct 111353 GCAAAAGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAG 111412 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 || | | ||| || | || || || || | || ||||| |||| || || ||| Sbjct 111413 ACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCA 111472 Query 72274 CTGGCACGAATATTGCTAATTGAT----AGACCTATTCCCCCTGCCATTTTAGAGATTAA 72329 ||||||| || || | | || ||||| || || || ||||| || ||||| | Sbjct 111473 GTGGCACGGAT---GCGA-TGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCAT 111528 Query 72330 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 72389 || || || | || || ||||| || || || || |||||| |||||| || || Sbjct 111529 GGCACAGGTCTTGAGGGTGTCGTAGATACCTTCAATGCTGTCATCCTTCATGTCAACCAG 111588 Query 72390 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 72449 || ||| |||| || || || || || || || | ||||||||| ||||| Sbjct 111589 GAAGCAGGACGACAGCTGAGCCTGAGGCGTGCCAGCGTTGAAGAGGGTAGGAGATGCGTG 111648 Query 72450 CGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAAT 72488 || || |||| |||| || |||||||||||||| Sbjct 111649 TGTGAAGAATTTGCTGGACATGAGGTTGTACGTCTCAAT 111687 >seq336 Length=177044 Score = 123 bits (136), Expect = 3e-23 Identities = 344/523 (66%), Gaps = 16/523 (3%) Strand=Plus/Minus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 ||||| || || || || ||||| | | ||| || || | | | || || ||||| Sbjct 110837 CCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATG 110778 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 |||||||| || ||||| | || | || ||||| | | | | |||||| || || Sbjct 110777 AAGAGATCGGGGATCCACAAGGCCAGGAAGAGATCGCGAGCGCGAACCTCCTCCTTGCCG 110718 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 ||||| || || |||||| | | | ||||| ||||| || || | ||| ||| Sbjct 110717 TGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATG 110658 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | | || || || ||||| || ||||| || | ||| | || ||||| || | Sbjct 110657 GCAAAAGCGCCGGGACGCTTGTTGCCGCCCTGGTCAACGTAGCGCGCCGTGTTGTTGAAG 110598 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 || | | ||| || | || || || || | || ||||| |||| || || ||| Sbjct 110597 ACGCGAAGCATGGGCGTGATGCCGTTTGAAGTGCCGTTGGTGCCGGCAATGTAAGAGCCA 110538 Query 72274 CTGGCACGAATATTGCTAATTGAT----AGACCTATTCCCCCTGCCATTTTAGAGATTAA 72329 ||||||| || || | | || ||||| || || || ||||| || ||||| | Sbjct 110537 GTGGCACGGAT---GCGA-TGGACGTTCAGACCAATACCACCAGCCATCTTGGAGATCAT 110482 Query 72330 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 72389 || || || | || || ||||| || || || ||||||||| |||||| | || Sbjct 110481 GGCACAGGTCTTGAGGGTGTCGTAGATACCTTCAATGCTATCATCCTTCATGTCGACCAG 110422 Query 72390 AAAACAGCTAGACATTTGGTGACGACTAG----TTCCCGCATTAAATAAGGTAGGAGAAG 72445 || ||| |||| | ||| | || | | || || || || | ||||||||| | Sbjct 110421 GAAGCAGGACGACA---GCTGA-GCCTGGGGCGTGCCAGCGTTGAAGAGGGTAGGAGAGG 110366 Query 72446 CGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAAT 72488 |||| || || |||| | |||| || |||||||||||||| Sbjct 110365 CGTGTGTGAAGAATTTGTTGGACATGAGGTTGTACGTCTCAAT 110323 >seq37272 Length=476240 Score = 87.8 bits (96), Expect = 2e-12 Identities = 175/257 (68%), Gaps = 3/257 (1%) Strand=Plus/Plus Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421 || || || ||||| || || ||||| || |||||||| |||| ||||||| |||| Sbjct 445739 TCAGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGAACC 445798 Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481 || || || | || || || ||| | | || ||||| || || || || || ||| Sbjct 445799 TGGACCTCGGCACTGAAGCGCTCAACGAGGTTCTCGTTGACGATGCCATCTGAAGCGGCA 445858 Query 42482 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--CGGTGTTAAT-TTATTCCAA 42538 || || || | | ||| || || || ||||| || | || | | || ||||| Sbjct 445859 AAGAAGGCAAGGATGTGTGAGATGAAGTACTTTTCATCGTCATTGATCTTGTTGTTCCAG 445918 Query 42539 TCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTT 42598 || | || ||| || || | ||| | ||||| | ||||| || || ||||||||||| Sbjct 445919 TCGTGGAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAAGAAGCTTCTGCCTTC 445978 Query 42599 TTATACATATTCCAGAT 42615 || ||||| | ||| || Sbjct 445979 TTGTACATTTGCCAAAT 445995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670817204190320