Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq31830 141 1e-28
seq31807 141 1e-28
seq336 141 1e-28
seq37272 136 6e-27
seq4446 131 2e-25
seq669 96.9 5e-15
seq7069 93.3 6e-14
seq2280 93.3 6e-14
>seq31830
Length=311768
Score = 141 bits (156), Expect = 1e-28
Identities = 332/496 (67%), Gaps = 4/496 (1%)
Strand=Plus/Minus
Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923
|| |||||| ||||||||||| || || || |||||| | ||| ||||| | || ||
Sbjct 111396 CGCTACGTTGACCAGGGCGGCAACAAGCGTCCCGGCGCTTTTGCCATCTACCTTGAGCCA 111337
Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983
|||||||| || || || || || | || | ||||| ||| ||| || ||||
Sbjct 111336 TGGCACGCTGATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAGGTT 111277
Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043
|| || | || | || || | ||| | || ||| | ||||||||||| ||| |
Sbjct 111276 CGCGCTCGCGATCTCTTCCTGGCCTTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAG 111217
Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103
| ||| |||||| || ||||||||| || || || || || | || ||||
Sbjct 111216 AAGAACGGCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTAC 111157
Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCC-GATACGTGAGACG 97162
|| || |||||||||||| |||| | |||||| | | ||| | || ||||
Sbjct 111156 GGTGACGAGTTTGAGGCCTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCCGCAAGACC 111097
Query 97163 AGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTC 97221
| || | || | |||| || ||| | ||| || | ||||||| ||||| || | |
Sbjct 111096 A-TCAAGGCGC-AGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACC 111039
Query 97222 CGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCA 97281
| | ||| |||||||||||| | || ||||| |||||||| || | || ||||
Sbjct 111038 CCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGTACCA 110979
Query 97282 TCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAG 97341
| ||||||| |||||||| || ||||| |||||| | | || || ||| || |
Sbjct 110978 TTCGCAGCTCCAACCTGTGCACAGAGATTGTCGAGTACTCGGCACCCGATGAGGTTGCCG 110919
Query 97342 TTTGCGTTCTGGCATC 97357
| ||| ||||| ||
Sbjct 110918 TCTGCAACCTGGCCTC 110903
>seq31807
Length=5160
Score = 141 bits (156), Expect = 1e-28
Identities = 332/496 (67%), Gaps = 4/496 (1%)
Strand=Plus/Minus
Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923
|| |||||| ||||||||||| || || || |||||| | ||| ||||| | || ||
Sbjct 4989 CGCTACGTTGACCAGGGCGGCAACAAGCGTCCCGGCGCTTTTGCCATCTACCTTGAGCCA 4930
Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983
|||||||| || || || || || | || | ||||| ||| ||| || ||||
Sbjct 4929 TGGCACGCTGATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAGGTT 4870
Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043
|| || | || | || || | ||| | || ||| | ||||||||||| ||| |
Sbjct 4869 CGCGCTCGCGATCTCTTCCTGGCCTTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAG 4810
Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103
| ||| |||||| || ||||||||| || || || || || | || ||||
Sbjct 4809 AAGAACGGCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTAC 4750
Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCC-GATACGTGAGACG 97162
|| || |||||||||||| |||| | |||||| | | ||| | || ||||
Sbjct 4749 GGTGACGAGTTTGAGGCCTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCCGCAAGACC 4690
Query 97163 AGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTC 97221
| || | || | |||| || ||| | ||| || | ||||||| ||||| || | |
Sbjct 4689 A-TCAAGGCGC-AGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACC 4632
Query 97222 CGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCA 97281
| | ||| |||||||||||| | || ||||| |||||||| || | || ||||
Sbjct 4631 CCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGTACCA 4572
Query 97282 TCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAG 97341
| ||||||| |||||||| || ||||| |||||| | | || || ||| || |
Sbjct 4571 TTCGCAGCTCCAACCTGTGCACAGAGATTGTCGAGTACTCGGCACCCGATGAGGTTGCCG 4512
Query 97342 TTTGCGTTCTGGCATC 97357
| ||| ||||| ||
Sbjct 4511 TCTGCAACCTGGCCTC 4496
>seq336
Length=177044
Score = 141 bits (156), Expect = 1e-28
Identities = 332/496 (67%), Gaps = 4/496 (1%)
Strand=Plus/Plus
Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923
|| |||||| ||||||||||| || || || |||||| | ||| ||||| | || ||
Sbjct 110614 CGCTACGTTGACCAGGGCGGCAACAAGCGTCCCGGCGCTTTTGCCATCTACCTTGAGCCA 110673
Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983
|||||||| || || || || || | || | ||||| ||| ||| || ||||
Sbjct 110674 TGGCACGCTGATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAGGTT 110733
Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043
|| || | || | || || | ||| | || ||| | ||||||||||| ||| |
Sbjct 110734 CGCGCTCGCGATCTCTTCCTGGCCTTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAG 110793
Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103
| ||| |||||| || ||||||||| || || || || || | || ||||
Sbjct 110794 AAGAACGGCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTAC 110853
Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCC-GATACGTGAGACG 97162
|| || |||||||||||| |||| | |||||| | | ||| | || ||||
Sbjct 110854 GGTGACGAGTTTGAGGCCTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCCGCAAGACC 110913
Query 97163 AGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTC 97221
| || | || | |||| || ||| | ||| || | ||||||| ||||| || | |
Sbjct 110914 A-TCAAGGCGC-AGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACC 110971
Query 97222 CGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCA 97281
| | ||| |||||||||||| | || ||||| |||||||| || | || ||||
Sbjct 110972 CCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGTACCA 111031
Query 97282 TCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAG 97341
| ||||||| |||||||| || ||||| |||||| | | || || ||| || |
Sbjct 111032 TTCGCAGCTCCAACCTGTGCACAGAGATTGTCGAGTACTCGGCACCCGATGAGGTTGCCG 111091
Query 97342 TTTGCGTTCTGGCATC 97357
| ||| ||||| ||
Sbjct 111092 TCTGCAACCTGGCCTC 111107
>seq37272
Length=476240
Score = 136 bits (150), Expect = 6e-27
Identities = 209/291 (72%), Gaps = 8/291 (3%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|||||| |||||||||| ||||| | || || || ||||| | ||||||| | ||||||
Sbjct 445995 ATTTGGCAAATGTACAAGAAGGCAGAAGCTTCTTTCTGGACCGCCGAAGAGATTGATCTG 445936
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
|||||||| || |||| ||| | | | | ||| ||| | || || ||
Sbjct 445935 TCCAAGGATCTCCACGACTGGAACAACAAGATCAATGACGATGAAAAGTACTTCATCTCA 445876
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197
||||| | ||||||||||||| || ||||| ||||||||||| || || ||||| ||
Sbjct 445875 CACATCCTTGCCTTCTTTGCCGCTTCAGATGGCATCGTCAACGAGAACCTCGTTGA-GCG 445817
Query 125198 ATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCAT 125254
||| | ||| | ||| |||| |||| ||| ||||| ||||| ||||| |||||
Sbjct 445816 CTTCAGTGCCGAG--GTCCAGGTTCCCGAGG-CTCGATGCTTCTACGGCTTCCAGATCAT 445760
Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305
||| |||||| | ||||| || | ||||| || ||||||| |||||
Sbjct 445759 GATGGAGAACATCCACTCTGAGACTTACTCGCTGCTCATTGACACCTACAT 445709
>seq4446
Length=444291
Score = 131 bits (144), Expect = 2e-25
Identities = 208/291 (71%), Gaps = 8/291 (3%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|||||| |||||||||| ||||| |||| ||||| ||||| | ||||||| | |||||
Sbjct 123814 ATTTGGCAAATGTACAAGAAGGCAGAGGCTTCCTTCTGGACCGCCGAAGAGATTGATCTA 123755
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
|| ||||| || |||| ||| | | | | ||| ||| | || || ||
Sbjct 123754 TCTAAGGATCTCCACGACTGGAACAACAAGATCAATGATGATGAAAAGTACTTCATCTCA 123695
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197
||||| | ||||||||||||| || ||||| ||||||||||| || || ||||| ||
Sbjct 123694 CACATCCTTGCCTTCTTTGCCGCTTCAGATGGCATCGTCAACGAGAACCTCGTTGA-GCG 123636
Query 125198 ATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCAT 125254
||| | ||| | ||| |||| |||| ||| ||||| ||||| ||||| || ||
Sbjct 123635 CTTCAGTGCCGAG--GTCCAGGTTCCTGAGG-CTCGATGCTTCTACGGCTTCCAGATTAT 123579
Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305
||| |||||| | ||||| || | ||||| || ||||||| |||||
Sbjct 123578 GATGGAGAACATCCACTCCGAGACTTACTCGCTGCTCATTGACACCTACAT 123528
>seq669
Length=171934
Score = 96.9 bits (106), Expect = 5e-15
Identities = 161/225 (72%), Gaps = 6/225 (3%)
Strand=Plus/Minus
Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126
||||| || || || || ||||| ||||| ||| |||||| || || |||| || ||
Sbjct 135639 GGCGACCTCGGTCCCGTCTACGGCTTCCAATGGCGGCACTTCGGTGCCGAGTACGTTGA- 135581
Query 70127 TGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATTG-CAGACAATCATTGACACTC 70184
||||| ||| ||||| ||||||| ||||| || || || |||| | | | ||| |
Sbjct 135580 TGCGAAGACGGACTACACGGGTCAAGGTGTCGACCAGCTGGCAGAGATTG-TCCACAAGC 135522
Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244
||||||||||||| ||| || | ||| | | || ||||||| || || | ||
Sbjct 135521 TCAAGACCAATCCGTACGATCGGCGCATCATCCTCAGCGCATGGAACCCGGCGCACCTGA 135462
Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC 70288
| | ||||| || || || || ||| |||||| |||||||||||
Sbjct 135461 AGAAGATGGCGCTGCCGCCCTGCCACATGTTTG-CTCAGTTTTAC 135418
>seq7069
Length=10009
Score = 93.3 bits (102), Expect = 6e-14
Identities = 128/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 125406 AAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465
|||||| | | ||| | | || || || ||||| | ||| ||||| ||||||||
Sbjct 59 AAGTCTACCTTTGCCACCCGCCTCGTTGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAGT 118
Query 125466 GGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCAC 125525
||| || || | ||||| |||||||||||||| || |||||||| || ||||| |
Sbjct 119 GGTGCCTTCGCCTCAATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTTC 178
Query 125526 AGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT 125584
|||||| | || ||||| |||||||| || ||| ||| || || ||| |||||
Sbjct 179 TCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACTGATTTCGCTTGTCTGCTGTT 237
>seq2280
Length=241
Score = 93.3 bits (102), Expect = 6e-14
Identities = 133/180 (74%), Gaps = 8/180 (4%)
Strand=Plus/Minus
Query 125130 TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT- 125188
|| || || ||||| | ||||||||||||| || ||||| ||||||||||| || ||
Sbjct 229 TTCATCTCACACATCCTTGCCTTCTTTGCCGCTTCAGATGGCATCGTCAACGAGAACCTC 170
Query 125189 GTTGACACGATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCG-TGCTTTTACGGATT 125245
||||| || ||| | ||| | ||| |||| |||| ||| ||||| ||||| ||
Sbjct 169 GTTGA-GCGCTTCAGTGCCGAG--GTCCAGGTTCCCGAGG-CTCGATGCTTCTACGGCTT 114
Query 125246 CCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305
||| |||||||| |||||| | ||||| || | ||||| || ||||||| |||||
Sbjct 113 CCAGATCATGATGGAGAACATCCACTCTGAGACTTACTCGCTGCTCATTGACACCTACAT 54
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740703658322320
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