Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq31830 141 1e-28 seq31807 141 1e-28 seq336 141 1e-28 seq37272 136 6e-27 seq4446 131 2e-25 seq669 96.9 5e-15 seq7069 93.3 6e-14 seq2280 93.3 6e-14 >seq31830 Length=311768 Score = 141 bits (156), Expect = 1e-28 Identities = 332/496 (67%), Gaps = 4/496 (1%) Strand=Plus/Minus Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923 || |||||| ||||||||||| || || || |||||| | ||| ||||| | || || Sbjct 111396 CGCTACGTTGACCAGGGCGGCAACAAGCGTCCCGGCGCTTTTGCCATCTACCTTGAGCCA 111337 Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983 |||||||| || || || || || | || | ||||| ||| ||| || |||| Sbjct 111336 TGGCACGCTGATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAGGTT 111277 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043 || || | || | || || | ||| | || ||| | ||||||||||| ||| | Sbjct 111276 CGCGCTCGCGATCTCTTCCTGGCCTTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAG 111217 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 | ||| |||||| || ||||||||| || || || || || | || |||| Sbjct 111216 AAGAACGGCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTAC 111157 Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCC-GATACGTGAGACG 97162 || || |||||||||||| |||| | |||||| | | ||| | || |||| Sbjct 111156 GGTGACGAGTTTGAGGCCTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCCGCAAGACC 111097 Query 97163 AGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTC 97221 | || | || | |||| || ||| | ||| || | ||||||| ||||| || | | Sbjct 111096 A-TCAAGGCGC-AGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACC 111039 Query 97222 CGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCA 97281 | | ||| |||||||||||| | || ||||| |||||||| || | || |||| Sbjct 111038 CCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGTACCA 110979 Query 97282 TCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAG 97341 | ||||||| |||||||| || ||||| |||||| | | || || ||| || | Sbjct 110978 TTCGCAGCTCCAACCTGTGCACAGAGATTGTCGAGTACTCGGCACCCGATGAGGTTGCCG 110919 Query 97342 TTTGCGTTCTGGCATC 97357 | ||| ||||| || Sbjct 110918 TCTGCAACCTGGCCTC 110903 >seq31807 Length=5160 Score = 141 bits (156), Expect = 1e-28 Identities = 332/496 (67%), Gaps = 4/496 (1%) Strand=Plus/Minus Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923 || |||||| ||||||||||| || || || |||||| | ||| ||||| | || || Sbjct 4989 CGCTACGTTGACCAGGGCGGCAACAAGCGTCCCGGCGCTTTTGCCATCTACCTTGAGCCA 4930 Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983 |||||||| || || || || || | || | ||||| ||| ||| || |||| Sbjct 4929 TGGCACGCTGATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAGGTT 4870 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043 || || | || | || || | ||| | || ||| | ||||||||||| ||| | Sbjct 4869 CGCGCTCGCGATCTCTTCCTGGCCTTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAG 4810 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 | ||| |||||| || ||||||||| || || || || || | || |||| Sbjct 4809 AAGAACGGCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTAC 4750 Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCC-GATACGTGAGACG 97162 || || |||||||||||| |||| | |||||| | | ||| | || |||| Sbjct 4749 GGTGACGAGTTTGAGGCCTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCCGCAAGACC 4690 Query 97163 AGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTC 97221 | || | || | |||| || ||| | ||| || | ||||||| ||||| || | | Sbjct 4689 A-TCAAGGCGC-AGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACC 4632 Query 97222 CGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCA 97281 | | ||| |||||||||||| | || ||||| |||||||| || | || |||| Sbjct 4631 CCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGTACCA 4572 Query 97282 TCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAG 97341 | ||||||| |||||||| || ||||| |||||| | | || || ||| || | Sbjct 4571 TTCGCAGCTCCAACCTGTGCACAGAGATTGTCGAGTACTCGGCACCCGATGAGGTTGCCG 4512 Query 97342 TTTGCGTTCTGGCATC 97357 | ||| ||||| || Sbjct 4511 TCTGCAACCTGGCCTC 4496 >seq336 Length=177044 Score = 141 bits (156), Expect = 1e-28 Identities = 332/496 (67%), Gaps = 4/496 (1%) Strand=Plus/Plus Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923 || |||||| ||||||||||| || || || |||||| | ||| ||||| | || || Sbjct 110614 CGCTACGTTGACCAGGGCGGCAACAAGCGTCCCGGCGCTTTTGCCATCTACCTTGAGCCA 110673 Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983 |||||||| || || || || || | || | ||||| ||| ||| || |||| Sbjct 110674 TGGCACGCTGATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAGGAGGTT 110733 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043 || || | || | || || | ||| | || ||| | ||||||||||| ||| | Sbjct 110734 CGCGCTCGCGATCTCTTCCTGGCCTTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAG 110793 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 | ||| |||||| || ||||||||| || || || || || | || |||| Sbjct 110794 AAGAACGGCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTGCTAC 110853 Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCC-GATACGTGAGACG 97162 || || |||||||||||| |||| | |||||| | | ||| | || |||| Sbjct 110854 GGTGACGAGTTTGAGGCCTTGTACGAGAAGTACGAGAAGGCTGGCAAGGGCCGCAAGACC 110913 Query 97163 AGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTC 97221 | || | || | |||| || ||| | ||| || | ||||||| ||||| || | | Sbjct 110914 A-TCAAGGCGC-AGAAGCTTTGGTACGCCGTCCTCGAGGCTCAGACCGAGACCGGCAACC 110971 Query 97222 CGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCA 97281 | | ||| |||||||||||| | || ||||| |||||||| || | || |||| Sbjct 110972 CCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGTACCA 111031 Query 97282 TCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAG 97341 | ||||||| |||||||| || ||||| |||||| | | || || ||| || | Sbjct 111032 TTCGCAGCTCCAACCTGTGCACAGAGATTGTCGAGTACTCGGCACCCGATGAGGTTGCCG 111091 Query 97342 TTTGCGTTCTGGCATC 97357 | ||| ||||| || Sbjct 111092 TCTGCAACCTGGCCTC 111107 >seq37272 Length=476240 Score = 136 bits (150), Expect = 6e-27 Identities = 209/291 (72%), Gaps = 8/291 (3%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| |||||||||| ||||| | || || || ||||| | ||||||| | |||||| Sbjct 445995 ATTTGGCAAATGTACAAGAAGGCAGAAGCTTCTTTCTGGACCGCCGAAGAGATTGATCTG 445936 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||| || |||| ||| | | | | ||| ||| | || || || Sbjct 445935 TCCAAGGATCTCCACGACTGGAACAACAAGATCAATGACGATGAAAAGTACTTCATCTCA 445876 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||||| | ||||||||||||| || ||||| ||||||||||| || || ||||| || Sbjct 445875 CACATCCTTGCCTTCTTTGCCGCTTCAGATGGCATCGTCAACGAGAACCTCGTTGA-GCG 445817 Query 125198 ATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCAT 125254 ||| | ||| | ||| |||| |||| ||| ||||| ||||| ||||| ||||| Sbjct 445816 CTTCAGTGCCGAG--GTCCAGGTTCCCGAGG-CTCGATGCTTCTACGGCTTCCAGATCAT 445760 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 ||| |||||| | ||||| || | ||||| || ||||||| ||||| Sbjct 445759 GATGGAGAACATCCACTCTGAGACTTACTCGCTGCTCATTGACACCTACAT 445709 >seq4446 Length=444291 Score = 131 bits (144), Expect = 2e-25 Identities = 208/291 (71%), Gaps = 8/291 (3%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| |||||||||| ||||| |||| ||||| ||||| | ||||||| | ||||| Sbjct 123814 ATTTGGCAAATGTACAAGAAGGCAGAGGCTTCCTTCTGGACCGCCGAAGAGATTGATCTA 123755 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || ||||| || |||| ||| | | | | ||| ||| | || || || Sbjct 123754 TCTAAGGATCTCCACGACTGGAACAACAAGATCAATGATGATGAAAAGTACTTCATCTCA 123695 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||||| | ||||||||||||| || ||||| ||||||||||| || || ||||| || Sbjct 123694 CACATCCTTGCCTTCTTTGCCGCTTCAGATGGCATCGTCAACGAGAACCTCGTTGA-GCG 123636 Query 125198 ATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCAT 125254 ||| | ||| | ||| |||| |||| ||| ||||| ||||| ||||| || || Sbjct 123635 CTTCAGTGCCGAG--GTCCAGGTTCCTGAGG-CTCGATGCTTCTACGGCTTCCAGATTAT 123579 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 ||| |||||| | ||||| || | ||||| || ||||||| ||||| Sbjct 123578 GATGGAGAACATCCACTCCGAGACTTACTCGCTGCTCATTGACACCTACAT 123528 >seq669 Length=171934 Score = 96.9 bits (106), Expect = 5e-15 Identities = 161/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 ||||| || || || || ||||| ||||| ||| |||||| || || |||| || || Sbjct 135639 GGCGACCTCGGTCCCGTCTACGGCTTCCAATGGCGGCACTTCGGTGCCGAGTACGTTGA- 135581 Query 70127 TGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATTG-CAGACAATCATTGACACTC 70184 ||||| ||| ||||| ||||||| ||||| || || || |||| | | | ||| | Sbjct 135580 TGCGAAGACGGACTACACGGGTCAAGGTGTCGACCAGCTGGCAGAGATTG-TCCACAAGC 135522 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 ||||||||||||| ||| || | ||| | | || ||||||| || || | || Sbjct 135521 TCAAGACCAATCCGTACGATCGGCGCATCATCCTCAGCGCATGGAACCCGGCGCACCTGA 135462 Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC 70288 | | ||||| || || || || ||| |||||| ||||||||||| Sbjct 135461 AGAAGATGGCGCTGCCGCCCTGCCACATGTTTG-CTCAGTTTTAC 135418 >seq7069 Length=10009 Score = 93.3 bits (102), Expect = 6e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 125406 AAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465 |||||| | | ||| | | || || || ||||| | ||| ||||| |||||||| Sbjct 59 AAGTCTACCTTTGCCACCCGCCTCGTTGCTTTCGCGGTCGTTGAGGGTATCTTCTTCAGT 118 Query 125466 GGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCAC 125525 ||| || || | ||||| |||||||||||||| || |||||||| || ||||| | Sbjct 119 GGTGCCTTCGCCTCAATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGCCTGACTTTC 178 Query 125526 AGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT 125584 |||||| | || ||||| |||||||| || ||| ||| || || ||| ||||| Sbjct 179 TCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACTGATTTCGCTTGTCTGCTGTT 237 >seq2280 Length=241 Score = 93.3 bits (102), Expect = 6e-14 Identities = 133/180 (74%), Gaps = 8/180 (4%) Strand=Plus/Minus Query 125130 TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT- 125188 || || || ||||| | ||||||||||||| || ||||| ||||||||||| || || Sbjct 229 TTCATCTCACACATCCTTGCCTTCTTTGCCGCTTCAGATGGCATCGTCAACGAGAACCTC 170 Query 125189 GTTGACACGATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCG-TGCTTTTACGGATT 125245 ||||| || ||| | ||| | ||| |||| |||| ||| ||||| ||||| || Sbjct 169 GTTGA-GCGCTTCAGTGCCGAG--GTCCAGGTTCCCGAGG-CTCGATGCTTCTACGGCTT 114 Query 125246 CCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 ||| |||||||| |||||| | ||||| || | ||||| || ||||||| ||||| Sbjct 113 CCAGATCATGATGGAGAACATCCACTCTGAGACTTACTCGCTGCTCATTGACACCTACAT 54 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740703658322320